1
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Jian X, Guo X, Cai Z, Wei L, Wang L, Xing XH, Zhang C. Single-cell microliter-droplet screening system (MISS Cell): An integrated platform for automated high-throughput microbial monoclonal cultivation and picking. Biotechnol Bioeng 2023; 120:778-792. [PMID: 36477904 DOI: 10.1002/bit.28300] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 11/18/2022] [Accepted: 12/04/2022] [Indexed: 12/12/2022]
Abstract
Solid plates have been used for microbial monoclonal isolation, cultivation, and colony picking since 1881. However, the process is labor- and resource-intensive for high-throughput requirements. Currently, several instruments have been integrated for automated and high-throughput picking, but complicated and expensive. To address these issues, we report a novel integrated platform, the single-cell microliter-droplet screening system (MISS Cell), for automated, high-throughput microbial monoclonal colony cultivation and picking. We verified the monoclonality of droplet cultures in the MISS Cell and characterized culture performance. Compared with solid plates, the MISS Cell generated a larger number of monoclonal colonies with higher initial growth rates using fewer resources. Finally, we established a workflow for automated high-throughput screening of Corynebacterium glutamicum using the MISS Cell and identified high glutamate-producing strains. The MISS Cell can serve as a universal platform to efficiently produce monoclonal colonies in high-throughput applications, overcoming the limitations of solid plates to promote rapid development in biotechnology.
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Affiliation(s)
- Xingjin Jian
- Department of Chemical Engineering, Institute of Biochemical Engineering, Tsinghua University, Beijing, China.,Key Laboratory of Industrial Biocatalysis, Ministry of Education, Tsinghua University, Beijing, China
| | - Xiaojie Guo
- Department of Chemical Engineering, Institute of Biochemical Engineering, Tsinghua University, Beijing, China.,Key Laboratory of Industrial Biocatalysis, Ministry of Education, Tsinghua University, Beijing, China
| | - Zhengshuo Cai
- Department of Chemical Engineering, Institute of Biochemical Engineering, Tsinghua University, Beijing, China.,Key Laboratory of Industrial Biocatalysis, Ministry of Education, Tsinghua University, Beijing, China
| | - Longfeng Wei
- College of Life Sciences/Institute of Agro-bioengineering, Guizhou University, Guiyang, China
| | - Liyan Wang
- Luoyang TMAXTREE Biotechnology Co., Ltd., Luoyang, China
| | - Xin-Hui Xing
- Department of Chemical Engineering, Institute of Biochemical Engineering, Tsinghua University, Beijing, China.,Key Laboratory of Industrial Biocatalysis, Ministry of Education, Tsinghua University, Beijing, China.,Center for Synthetic & Systems Biology, Tsinghua University, Beijing, China
| | - Chong Zhang
- Department of Chemical Engineering, Institute of Biochemical Engineering, Tsinghua University, Beijing, China.,Key Laboratory of Industrial Biocatalysis, Ministry of Education, Tsinghua University, Beijing, China.,Center for Synthetic & Systems Biology, Tsinghua University, Beijing, China
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2
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Microbial micro-tube culture system: A miniature bioreactor for controllable bubble-free oxygen supply based on high gas-permeability Teflon tube. Biochem Eng J 2023. [DOI: 10.1016/j.bej.2022.108789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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3
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Duan X, Yin J, Huang M, Wang P, Zhang J. Hydrogenation kinetics of halogenated nitroaromatics over Pt/C in a continuous Micro-packed bed reactor. Chem Eng Sci 2022. [DOI: 10.1016/j.ces.2022.117483] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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4
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5
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Enhancement of gas-liquid mass transfer in curved membrane contactors with the generation of dean vortices. J Memb Sci 2021. [DOI: 10.1016/j.memsci.2021.119592] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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6
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Cao L, Russo D, Lapkin AA. Automated robotic platforms in design and development of formulations. AIChE J 2021. [DOI: 10.1002/aic.17248] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Liwei Cao
- Department of Chemical Engineering and Biotechnology University of Cambridge Cambridge UK
- Cambridge Centre for Advanced Research and Education in Singapore, CARES Ltd. Singapore
| | - Danilo Russo
- Department of Chemical Engineering and Biotechnology University of Cambridge Cambridge UK
| | - Alexei A. Lapkin
- Department of Chemical Engineering and Biotechnology University of Cambridge Cambridge UK
- Cambridge Centre for Advanced Research and Education in Singapore, CARES Ltd. Singapore
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7
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Yin Y, Zhang X, Zhu C, Fu T, Ma Y. Hydrodynamics and gas-liquid mass transfer in a cross-flow T-junction microchannel: Comparison of two operation modes. Sep Purif Technol 2021. [DOI: 10.1016/j.seppur.2020.117697] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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8
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Han S, Kashfipour MA, Ramezani M, Abolhasani M. Accelerating gas-liquid chemical reactions in flow. Chem Commun (Camb) 2020; 56:10593-10606. [PMID: 32785297 DOI: 10.1039/d0cc03511d] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Over the past decade, continuous flow reactors have emerged as a powerful tool for accelerated fundamental and applied studies of gas-liquid reactions, offering facile gas delivery and process intensification. In particular, unique features of highly gas-permeable tubular membranes in flow reactors (i.e., tube-in-tube flow reactor configuration) have been exploited as (i) an efficient analytic tool for gas-liquid solubility and diffusivity measurements and (ii) reliable gas delivery/generation strategy, providing versatile adaptability for a wide range of gas-liquid processes. The tube-in-tube flow reactors have been successfully adopted for rapid exploration of a wide range of gas-liquid reactions (e.g., amination, carboxylation, carbonylation, hydrogenation, ethylenation, oxygenation) using gaseous species both as the reactant and the product, safely handling toxic and flammable gases or unstable intermediate compounds. In this highlight, we present an overview of recent developments in the utilization of such intensified flow reactors within modular flow chemistry platforms for different gas-liquid processes involving carbon dioxide, oxygen, and other gases. We provide a detailed step-by-step guideline for robust assembly and safe operation of tube-in-tube flow reactors. We also discuss the current challenges and potential future directions for further development and utilization of tubular membrane-based flow reactors for gas-liquid processes.
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Affiliation(s)
- Suyong Han
- Department of Chemical and Biomolecular Engineering, North Carolina State University, 911 Partners Way, Raleigh, NC 27695, USA.
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9
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Zhou C, Xie B, Li S, Zhang J. Rapid measurement of gas diffusivity in liquids using a tube‐in‐tube reactor with an unsteady‐state strategy. AIChE J 2020. [DOI: 10.1002/aic.17015] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Caijin Zhou
- The State Key Lab of Chemical Engineering, Department of Chemical Engineering Tsinghua University Beijing China
| | - Bingqi Xie
- The State Key Lab of Chemical Engineering, Department of Chemical Engineering Tsinghua University Beijing China
| | - Shaowei Li
- The Institute of Nuclear and New Energy Technology, Tsinghua University Beijing China
| | - Jisong Zhang
- The State Key Lab of Chemical Engineering, Department of Chemical Engineering Tsinghua University Beijing China
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10
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Feng Y, Mu H, Liu X, Huang Z, Zhang H, Wang J, Yang Y. Leveraging 3D Printing for the Design of High-Performance Venturi Microbubble Generators. Ind Eng Chem Res 2020. [DOI: 10.1021/acs.iecr.0c01509] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Yirong Feng
- State Key Laboratory of Chemical Engineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, PR China
| | - Hongfeng Mu
- State Key Laboratory of Chemical Engineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, PR China
| | - Xi Liu
- State Key Laboratory of Chemical Engineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, PR China
| | - Zhengliang Huang
- State Key Laboratory of Chemical Engineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, PR China
| | - Haomiao Zhang
- State Key Laboratory of Chemical Engineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, PR China
| | - Jingdai Wang
- State Key Laboratory of Chemical Engineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, PR China
| | - Yongrong Yang
- State Key Laboratory of Chemical Engineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, PR China
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11
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Jian X, Guo X, Wang J, Tan ZL, Xing X, Wang L, Zhang C. Microbial microdroplet culture system (MMC): An integrated platform for automated, high‐throughput microbial cultivation and adaptive evolution. Biotechnol Bioeng 2020; 117:1724-1737. [DOI: 10.1002/bit.27327] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2019] [Revised: 02/14/2020] [Accepted: 03/08/2020] [Indexed: 12/20/2022]
Affiliation(s)
- Xingjin Jian
- Department of Chemical Engineering, Institute of Biochemical EngineeringTsinghua University Beijing China
- Key Laboratory of Industrial Biocatalysis, Ministry of EducationTsinghua University Beijing China
| | - Xiaojie Guo
- Luoyang TMAXTREE Biotechnology Co., Ltd. Luoyang China
| | - Jia Wang
- Biochemical Engineering Research Group, School of Chemical Engineering and TechnologyXi'an Jiaotong University Xi'an China
| | - Zheng Lin Tan
- Department of Chemical Engineering, Institute of Biochemical EngineeringTsinghua University Beijing China
- Key Laboratory of Industrial Biocatalysis, Ministry of EducationTsinghua University Beijing China
- School of Life Science and TechnologyTokyo Institute of Technology, Midori‐ku Yokohama Kanagawa Prefecture Japan
| | - Xin‐hui Xing
- Department of Chemical Engineering, Institute of Biochemical EngineeringTsinghua University Beijing China
- Key Laboratory of Industrial Biocatalysis, Ministry of EducationTsinghua University Beijing China
- Center for Synthetic & Systems BiologyTsinghua University Beijing China
| | - Liyan Wang
- Luoyang TMAXTREE Biotechnology Co., Ltd. Luoyang China
| | - Chong Zhang
- Department of Chemical Engineering, Institute of Biochemical EngineeringTsinghua University Beijing China
- Key Laboratory of Industrial Biocatalysis, Ministry of EducationTsinghua University Beijing China
- Center for Synthetic & Systems BiologyTsinghua University Beijing China
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12
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Lin X, Zhou C, Zhu S, Deng H, Zhang J, Lu Y. O 2-Tuned Protein Synthesis Machinery in Escherichia coli-Based Cell-Free System. Front Bioeng Biotechnol 2020; 8:312. [PMID: 32328487 PMCID: PMC7160232 DOI: 10.3389/fbioe.2020.00312] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2020] [Accepted: 03/23/2020] [Indexed: 12/18/2022] Open
Abstract
Involved in most aerobic biochemical processes, oxygen affects cellular functions, and organism behaviors. Protein synthesis, as the underlying biological process, is unavoidably affected by the regulation of oxygen delivery and utilization. Bypassing the cell wall, cell-free protein synthesis (CFPS) systems are well adopted for the precise oxygen regulation analysis of bioprocesses. Here a reliable flow platform was developed for measuring and analyzing the oxygen regulation on the protein synthesis processes by combining Escherichia coli-based CFPS systems and a tube-in-tube reactor. This platform allows protein synthesis reactions conducted in precisely controlled oxygen concentrations. For analysis of the intrinsic role of oxygen in protein synthesis, O2-tuned CFPS systems were explored with transcription-translation related parameters (transcripts, energy, reactive oxygen species, and proteomic pathway analysis). It was found that 2% of oxygen was the minimum requirement for protein synthesis. There was translation-related protein degradation in the high oxygen condition leading to a reduction. By combining the precise gas level controlling and open biosystems, this platform is also potential for fundamental understanding and clinical applications by diverse gas regulation in biological processes.
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Affiliation(s)
- Xiaomei Lin
- Key Laboratory of Industrial Biocatalysis, Ministry of Education, Department of Chemical Engineering, Tsinghua University, Beijing, China
| | - Caijin Zhou
- The State Key Lab of Chemical Engineering, Department of Chemical Engineering, Tsinghua University, Beijing, China
| | - Songbiao Zhu
- Ministry of Education Key Laboratory of Bioinformatics, Center for Synthetic and Systematic Biology, School of Life Sciences, Tsinghua University, Beijing, China
| | - Haiteng Deng
- Ministry of Education Key Laboratory of Bioinformatics, Center for Synthetic and Systematic Biology, School of Life Sciences, Tsinghua University, Beijing, China
| | - Jisong Zhang
- The State Key Lab of Chemical Engineering, Department of Chemical Engineering, Tsinghua University, Beijing, China
| | - Yuan Lu
- Key Laboratory of Industrial Biocatalysis, Ministry of Education, Department of Chemical Engineering, Tsinghua University, Beijing, China
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13
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Zhou C, Lin X, Lu Y, Zhang J. Flexible on-demand cell-free protein synthesis platform based on a tube-in-tube reactor. REACT CHEM ENG 2020. [DOI: 10.1039/c9re00394k] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A flexible on-demand cell-free protein synthesis platform using a tube-in-tube reactor is established for continuous synthesis of different protein drugs.
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Affiliation(s)
- Caijin Zhou
- The State Key Lab of Chemical Engineering
- Department of Chemical Engineering
- Tsinghua University
- Beijing 100084
- China
| | - Xiaomei Lin
- Key Lab of Industrial Biocatalysis
- Ministry of Education
- Department of Chemical Engineering
- Tsinghua University
- Beijing 100084
| | - Yuan Lu
- Key Lab of Industrial Biocatalysis
- Ministry of Education
- Department of Chemical Engineering
- Tsinghua University
- Beijing 100084
| | - Jisong Zhang
- The State Key Lab of Chemical Engineering
- Department of Chemical Engineering
- Tsinghua University
- Beijing 100084
- China
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14
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Zhang J, Teixeira AR, Zhang H, Jensen KF. Determination of fast gas–liquid reaction kinetics in flow. REACT CHEM ENG 2020. [DOI: 10.1039/c9re00390h] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
A flow concept is developed to measure fast gas–liquid reaction kinetics based on a tube-in-tube reactor.
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Affiliation(s)
- Jisong Zhang
- The State Key Laboratory of Chemical Engineering
- Department of Chemical Engineering
- Tsinghua University
- Beijing 100084
- China
| | - Andrew R. Teixeira
- Department of Chemical Engineering
- Massachusetts Institute of Technology
- Cambridge
- USA
- Department of Chemical Engineering
| | - Haomiao Zhang
- Department of Chemical Engineering
- Massachusetts Institute of Technology
- Cambridge
- USA
| | - Klavs F. Jensen
- Department of Chemical Engineering
- Massachusetts Institute of Technology
- Cambridge
- USA
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15
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Duan X, Tu J, Teixeira AR, Sang L, Jensen KF, Zhang J. An automated flow platform for accurate determination of gas–liquid–solid reaction kinetics. REACT CHEM ENG 2020. [DOI: 10.1039/d0re00191k] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
An automated flow platform based on a tube-in-tube contactor and micro-packed bed reactor is developed to measure the kinetics of gas–liquid–solid hydrogenation reactions.
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Affiliation(s)
- Xiaonan Duan
- The State Key Laboratory of Chemical Engineering
- Department of Chemical Engineering
- Tsinghua University
- Beijing 100084
- China
| | - Jiacheng Tu
- The State Key Laboratory of Chemical Engineering
- Department of Chemical Engineering
- Tsinghua University
- Beijing 100084
- China
| | - Andrew R. Teixeira
- Department of Chemical Engineering
- Worcester Polytechnic Institute
- Worcester
- USA
| | - Le Sang
- The State Key Laboratory of Chemical Engineering
- Department of Chemical Engineering
- Tsinghua University
- Beijing 100084
- China
| | - Klavs F. Jensen
- Department of Chemical Engineering
- Massachusetts Institute of Technology
- Cambridge
- USA
| | - Jisong Zhang
- The State Key Laboratory of Chemical Engineering
- Department of Chemical Engineering
- Tsinghua University
- Beijing 100084
- China
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16
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Sang L, Tu J, Cheng H, Luo G, Zhang J. Hydrodynamics and mass transfer of gas–liquid flow in micropacked bed reactors with metal foam packing. AIChE J 2019. [DOI: 10.1002/aic.16803] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Le Sang
- The State Key Lab of Chemical Engineering, Department of Chemical Engineering Tsinghua University Beijing China
| | - Jiacheng Tu
- The State Key Lab of Chemical Engineering, Department of Chemical Engineering Tsinghua University Beijing China
| | - Han Cheng
- The State Key Lab of Chemical Engineering, Department of Chemical Engineering Tsinghua University Beijing China
| | - Guangsheng Luo
- The State Key Lab of Chemical Engineering, Department of Chemical Engineering Tsinghua University Beijing China
| | - Jisong Zhang
- The State Key Lab of Chemical Engineering, Department of Chemical Engineering Tsinghua University Beijing China
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17
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Lan M, Zhao Z, Zeng Q, Zhou C, Zhang J. Rapid Measurement of Gas Solubility in Ionic Liquids with a Simple Tube-in-Tube Reactor. Ind Eng Chem Res 2019. [DOI: 10.1021/acs.iecr.9b00478] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Minle Lan
- The State Key Laboratory of Chemical Engineering, Department of Chemical Engineering, Tsinghua University, Beijing, 100084, China
| | - Zhijun Zhao
- College of Chemical Engineering, Beijing Institute of Petrochemical Technology, Beijing, 102617, China
| | - Qingqiulin Zeng
- The State Key Laboratory of Chemical Engineering, Department of Chemical Engineering, Tsinghua University, Beijing, 100084, China
| | - Caijin Zhou
- The State Key Laboratory of Chemical Engineering, Department of Chemical Engineering, Tsinghua University, Beijing, 100084, China
| | - Jisong Zhang
- The State Key Laboratory of Chemical Engineering, Department of Chemical Engineering, Tsinghua University, Beijing, 100084, China
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18
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Zhang J, Teixeira AR, Zhang H, Jensen KF. Flow Toolkit for Measuring Gas Diffusivity in Liquids. Anal Chem 2019; 91:4004-4009. [PMID: 30781945 DOI: 10.1021/acs.analchem.8b05396] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Precise knowledge of gas diffusivity in liquids is critical for describing complex multiphase reaction systems. Here we present a high-throughput flow concept to measure gas diffusivity in liquids. This strategy takes advantage of the tube-in-tube reactor design whereby semipermeable Teflon AF-2400 tubes facilitate fast mass transfer between gas and liquid without directly contacting the two fluids. Coupled pseudosteady-state flux balances over the gas and liquid describe the gas dissolution rate and corresponding diffusivity with the aid of a single gas flow meter and a continuously ramped liquid flow rate. This in situ method demonstrates excellent accuracy in diffusion coefficient measurements, with less than 5% deviation from established techniques.
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Affiliation(s)
- Jisong Zhang
- The State Key Laboratory of Chemical Engineering, Department of Chemical Engineering , Tsinghua University , Beijing 100084 , China.,Department of Chemical Engineering , Massachusetts Institute of Technology , Cambridge , Massachusetts 02139 , United States
| | - Andrew R Teixeira
- Department of Chemical Engineering , Massachusetts Institute of Technology , Cambridge , Massachusetts 02139 , United States.,Department of Chemical Engineering , Worcester Polytechnic Institute , 100 Institute Road , Worcester , Massachusetts 01609 , United States
| | - Haomiao Zhang
- Department of Chemical Engineering , Massachusetts Institute of Technology , Cambridge , Massachusetts 02139 , United States
| | - Klavs F Jensen
- Department of Chemical Engineering , Massachusetts Institute of Technology , Cambridge , Massachusetts 02139 , United States
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19
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Dimitriou E, Jones RH, Pritchard RG, Miller GJ, O'Brien M. Gas-liquid flow hydrogenation of nitroarenes: Efficient access to a pharmaceutically relevant pyrrolobenzo[1,4]diazepine scaffold. Tetrahedron 2018. [DOI: 10.1016/j.tet.2018.09.025] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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20
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O’Brien M. An automated colorimetric inline titration of CO2 concentrations in solvent flow streams using a Teflon AF-2400 tube-in-tube device. J CO2 UTIL 2017. [DOI: 10.1016/j.jcou.2017.08.020] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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