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Marin E, Bristol DR, Rondinella A, Lanzutti A, Riello P. Statistical approaches to Raman imaging: principal component score mapping. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2024; 16:2707-2720. [PMID: 38629136 DOI: 10.1039/d4ay00171k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2024]
Abstract
In this research, Raman imaging was employed to map various samples, and the resulting data were analyzed using a suite of automated tools to extract critical information, including intensity and signal-to-noise ratio. The acquired spectra were further processed to identify similarities and investigate patterns using principal component analysis. The objective of this study was to establish guidelines for investigating Raman imaging results, particularly when dealing with large datasets comprising thousands of relatively low-intensity spectra. The overall quality of the results was assessed, and representative locations were determined based on the main Raman bands. While automated software solutions are insufficient for removing baselines and fitting the data, statistical analysis proved to be a powerful tool for extracting valuable information directly from the raw spectral data. This approach enables the extraction of as much information as possible from large arrays of spectral data, even in complex cases where automated software may fall short. The findings of this study contribute to enhancing the analysis and interpretation of Raman imaging results, providing researchers with a robust methodology for extracting meaningful insights from complex datasets, reducing the amount of effort required during data interpretation and analysis.
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Affiliation(s)
- Elia Marin
- Ceramic Physics Laboratory, Kyoto Institute of Technology, Sakyo-ku, Matsugasaki, 606-8585 Kyoto, Japan.
- Department of Dental Medicine, Graduate School of Medical Science, Kyoto Prefectural University of Medicine, Kamigyo-ku, Kyoto 602-8566, Japan
- Department Polytechnic of Engineering and Architecture, University of Udine, 33100, Udine, Italy
- Biomedical Research Center, Kyoto Institute of Technology, Sakyo-ku, Matsugasaki, Kyoto 606-8585, Japan
| | - Davide Redolfi Bristol
- Ceramic Physics Laboratory, Kyoto Institute of Technology, Sakyo-ku, Matsugasaki, 606-8585 Kyoto, Japan.
- Department of Immunology, Graduate School of Medical Science, Kyoto Prefectural University of Medicine, Kamigyo-ku, Kyoto 602-8566, Japan
- Department of Molecular Science and Nanosystems, Ca' Foscari University of Venice, Via Torino 155, 30172 Venice, Italy
| | - Alfredo Rondinella
- Department Polytechnic of Engineering and Architecture, University of Udine, 33100, Udine, Italy
| | - Alex Lanzutti
- Department Polytechnic of Engineering and Architecture, University of Udine, 33100, Udine, Italy
| | - Pietro Riello
- Department of Molecular Science and Nanosystems, Ca' Foscari University of Venice, Via Torino 155, 30172 Venice, Italy
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2
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Gao Z, Zhao C, Dong D, Liu S, Wen X, Gu Y, Jiao L. Visualizing changes of metabolites during iron deficiency chlorosis in field-grown pear leaves using micro-Raman spectral imaging. FRONTIERS IN PLANT SCIENCE 2023; 13:1079660. [PMID: 36714713 PMCID: PMC9878449 DOI: 10.3389/fpls.2022.1079660] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Accepted: 12/23/2022] [Indexed: 06/18/2023]
Abstract
Owing to iron chlorosis, pear trees are some of the most severely impacted by iron deficiency, and they suffer significant losses every year. While it is possible to determine the iron content of leaves using laboratory-standard analytical techniques, the sampling and analysis process is time-consuming and labor-intensive, and it does not quickly and accurately identify the physiological state of iron-deficient leaves. Therefore, it is crucial to find a precise and quick visualization approach for metabolites linked to leaf iron to comprehend the mechanism of iron deficiency and create management strategies for pear-tree planting. In this paper, we propose a micro-Raman spectral imaging method for non-destructive, rapid, and precise visual characterization of iron-deficiency-related metabolites in pear leaves. According to our findings, iron deficiency significantly decreased the Raman peak intensities of chlorophylls and lipids in leaves. The spatial distributions of chlorophylls and lipids in the leaves changed significantly as the symptoms of iron insufficiency worsened. The technique offers a new, prospective tool for rapid recognition of iron deficiency in pear trees because it is capable of visual detection of plant physiological metabolites induced by iron deficiency.
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Affiliation(s)
- Zhen Gao
- College of Information and Electrical Engineering, China Agricultural University, Beijing, China
- National Research Center of Intelligent Equipment for Agriculture, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China
| | - Chunjiang Zhao
- College of Information and Electrical Engineering, China Agricultural University, Beijing, China
- National Research Center of Intelligent Equipment for Agriculture, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China
| | - Daming Dong
- National Research Center of Intelligent Equipment for Agriculture, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China
| | - Songzhong Liu
- Institute of Forestry & Pomology, Beijing Academy of Agriculture & Forestry Sciences, Beijing, China
| | - Xuelin Wen
- National Research Center of Intelligent Equipment for Agriculture, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China
- Wuhan National Laboratory for Optoelectronics (WNLO), Huazhong University of Science and Technology, Wuhan, Hubei, China
| | - Yifan Gu
- National Research Center of Intelligent Equipment for Agriculture, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China
| | - Leizi Jiao
- National Research Center of Intelligent Equipment for Agriculture, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China
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Alali H, Ai Y, Pan YL, Videen G, Wang C. A Collection of Molecular Fingerprints of Single Aerosol Particles in Air for Potential Identification and Detection Using Optical Trapping-Raman Spectroscopy. Molecules 2022; 27:5966. [PMID: 36144702 PMCID: PMC9505655 DOI: 10.3390/molecules27185966] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Revised: 08/31/2022] [Accepted: 09/07/2022] [Indexed: 11/17/2022] Open
Abstract
Characterization, identification, and detection of aerosol particles in their native atmospheric states remain a challenge. Recently, optical trapping-Raman spectroscopy (OT-RS) has been developed and demonstrated for characterization of single, airborne particles. Such particles in different chemical groups have been characterized by OT-RS in recent years and many more are being studied. In this work, we collected single-particle Raman spectra measured using the OT-RS technique and began construction of a library of OT-RS fingerprints that may be used as a reference for potential detection and identification of aerosol particles in the atmosphere. We collected OT-RS fingerprints of aerosol particles from eight different categories including carbons, bioaerosols (pollens, fungi, vitamins, spores), dusts, biological warfare agent surrogates, etc. Among the eight categories, spectral fingerprints of six groups of aerosol particles have been published previously and two other groups are new. We also discussed challenges, limitations, and advantages of using single-particle optical trapping-Raman spectroscopy for aerosol-particle characterization, identification, and detection.
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Affiliation(s)
- Haifa Alali
- Department of Physics and Astronomy, Mississippi State University, Starkville, MS 39759, USA
| | - Yukai Ai
- Department of Physics and Astronomy, Mississippi State University, Starkville, MS 39759, USA
| | - Yong-Le Pan
- DEVCOM Army Research Laboratory, 2800 Powder Mill Road, Adelphi, MD 20783, USA
| | - Gorden Videen
- DEVCOM Army Research Laboratory, 2800 Powder Mill Road, Adelphi, MD 20783, USA
| | - Chuji Wang
- Department of Physics and Astronomy, Mississippi State University, Starkville, MS 39759, USA
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Sun N, Chang L, Lu Y, Wu W. Raman Mapping-Based Reverse Engineering Facilitates Development of Sustained-Release Nifedipine Tablet. Pharmaceutics 2022; 14:pharmaceutics14051052. [PMID: 35631638 PMCID: PMC9147140 DOI: 10.3390/pharmaceutics14051052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2022] [Revised: 05/05/2022] [Accepted: 05/11/2022] [Indexed: 12/01/2022] Open
Abstract
The development of generic preparations that are bioequivalent to a reference listed drug (RLD) is faced with challenges because some critical attributes of RLDs are commonly unknown to developers. In order to determine these attributes, Raman mapping-based reverse engineering in this study to analyze a model sustained-release tablet of nifedipine. The Raman mapping results indicate that the size and size distribution of nifedipine are critical to its release pattern and bioavailability. The tablets with a particle size of nifedipine comparable to that of a commercial product, Adalat®-L, showed similar in vitro release profiles to the RLD. Moreover, a pharmacokinetic study in human volunteers proved the bioequivalence of the two preparations. In conclusion, Raman mapping-based reverse engineering has the potential to facilitate the development of generic preparations.
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Affiliation(s)
- Ningyun Sun
- Key Laboratory of Smart Drug Delivery of MOE, School of Pharmacy, Fudan University, Shanghai 201203, China;
- SPH Sine Pharmaceutical Laboratories Co., Ltd., Shanghai 201206, China;
| | - Liang Chang
- SPH Sine Pharmaceutical Laboratories Co., Ltd., Shanghai 201206, China;
| | - Yi Lu
- Key Laboratory of Smart Drug Delivery of MOE, School of Pharmacy, Fudan University, Shanghai 201203, China;
- Fudan Zhangjiang Institute, Shanghai 201203, China
- Correspondence: (Y.L.); (W.W.)
| | - Wei Wu
- Key Laboratory of Smart Drug Delivery of MOE, School of Pharmacy, Fudan University, Shanghai 201203, China;
- Fudan Zhangjiang Institute, Shanghai 201203, China
- Correspondence: (Y.L.); (W.W.)
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Chang YP, Devi Y, Chen CH. Micro-droplet Trapping and Manipulation: Understanding Aerosol Better for a Healthier Environment. Chem Asian J 2021; 16:1644-1660. [PMID: 33999498 DOI: 10.1002/asia.202100516] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2021] [Indexed: 11/09/2022]
Abstract
Understanding the physicochemical properties and heterogeneous processes of aerosols is key not only to elucidate the impacts of aerosols on the atmosphere and humans but also to exploit their further applications, especially for a healthier environment. Experiments that allow for spatially control of single aerosol particles and investigations on the fundamental properties and heterogeneous chemistry at the single-particle level have flourished during the last few decades, and significant breakthroughs in recent years promise better control and novel applications aimed at resolving key issues in aerosol science. Here we propose graphene oxide (GO) aerosols as prototype aerosols containing polycyclic aromatic hydrocarbons, and GO can behave as two-dimensional surfactants which could modify the interfacial properties of aerosols. We describe the techniques of trapping single particles and furthermore the current status of the optical spectroscopy and chemistry of GO. The current applications of these single-particle trapping techniques are summarized and interesting future applications of GO aerosols are discussed.
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Affiliation(s)
- Yuan-Pin Chang
- Department of Chemistry, National Sun Yat-sen University, No. 70 Lien-hai Rd., Kaohsiung, 80424, Taiwan.,Aerosol Science Research Center, National Sun Yat-sen University, No. 70 Lien-hai Rd., Kaohsiung, 80424, Taiwan
| | - Yanita Devi
- Department of Chemistry, National Sun Yat-sen University, No. 70 Lien-hai Rd., Kaohsiung, 80424, Taiwan
| | - Chun-Hu Chen
- Department of Chemistry, National Sun Yat-sen University, No. 70 Lien-hai Rd., Kaohsiung, 80424, Taiwan
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Nakajima R, Miura A, Abe S, Kitamura N. Optical Trapping-Polarized Raman Microspectroscopy of Single Ethanol Aerosol Microdroplets: Droplet Size Effects on Rotational Relaxation Time and Viscosity. Anal Chem 2021; 93:5218-5224. [PMID: 33724784 DOI: 10.1021/acs.analchem.0c05406] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Optical trapping-polarized Raman microspectroscopy of single ethanol (EtOH) microdroplets with a diameter (d) of 6.1-16.5 μm levitated in an EtOH vapor-saturated air/N2 gas atmosphere has been explored to elucidate the vibrational and rotational motions of EtOH in the droplets at 22.0 °C. The Raman spectral bandwidth of the C-C stretching vibrational mode observed for an aerosol EtOH microdroplet was narrower than that of bulk EtOH, suggesting that the vibrational/rotational motions of EtOH in the aerosol system were restricted compared to those in the bulk system. In practice, polarized Raman microspectroscopy demonstrated that the rotational relaxation time (τrot) of EtOH in an aerosol microdroplet with d = 16. 5 μm was slower (2.33 ps) than that in a bulk EtOH (1.65 ps), while the vibrational relaxation times (τvib) in the aerosol and bulk EtOH systems were almost comparable with one another: 0.86-0.98 ps. Furthermore, although the τvib value of an aerosol EtOH microdroplet was almost unchanged irrespective of d as described above, the τrot value increased from 2.33 to 3.57 ps with a decrease in d from 16.5 to 6.1 μm, which corresponded to the increase in EtOH viscosity (η) from 1.33 to 2.04 cP with the decrease in d. The droplet size dependences of τrot and η in an aerosol EtOH microdroplet were discussed in terms of the gas/droplet interfacial molecular arrangements of EtOH and Laplace pressure experienced by a spherical EtOH microdroplet in the gas phase.
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Affiliation(s)
- Ryosuke Nakajima
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Atsushi Miura
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan.,Department of Chemical Sciences and Engineering, Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-0810, Japan
| | - Sayaka Abe
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Noboru Kitamura
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan.,Toyota Physical and Chemical Research Institute, Nagakute, Aichi 480-1192, Japan
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Erasmus SW, van Hasselt L, Ebbinge LM, van Ruth SM. Real or fake yellow in the vibrant colour craze: Rapid detection of lead chromate in turmeric. Food Control 2021. [DOI: 10.1016/j.foodcont.2020.107714] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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Karlsson JKG, Atahan A, Harriman A, Tkachenko NV, Ward AD, Schaberle FA, Serpa C, Arnaut LG. Singlet Exciton Fission and Associated Enthalpy Changes with a Covalently Linked Bichromophore Comprising TIPS-Pentacenes Held in an Open Conformation. J Phys Chem A 2021; 125:1184-1197. [DOI: 10.1021/acs.jpca.0c09961] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Joshua K. G. Karlsson
- Molecular Photonics Laboratory, School of Natural and Environmental Sciences, Newcastle University, Bedson Building, Newcastle upon Tyne NE1 7RU, U.K
| | - Alparslan Atahan
- Molecular Photonics Laboratory, School of Natural and Environmental Sciences, Newcastle University, Bedson Building, Newcastle upon Tyne NE1 7RU, U.K
| | - Anthony Harriman
- Molecular Photonics Laboratory, School of Natural and Environmental Sciences, Newcastle University, Bedson Building, Newcastle upon Tyne NE1 7RU, U.K
| | - Nikolai V. Tkachenko
- Faculty of Engineering and Natural Sciences, Tampere University, Koereakoulunkatu 7, FIN-33720 Tampere, Finland
| | - Andrew D. Ward
- Central Laser Facility, Research Complex at Harwell, STFC Rutherford Appleton Laboratory, Didcot OX11 0FA, U.K
| | - Fabio A. Schaberle
- CQC, Department of Chemistry, University of Coimbra, 3004-535 Coimbra, Portugal
| | - Carlos Serpa
- CQC, Department of Chemistry, University of Coimbra, 3004-535 Coimbra, Portugal
| | - Luis G. Arnaut
- CQC, Department of Chemistry, University of Coimbra, 3004-535 Coimbra, Portugal
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Martin-Fernandez ML. A brief history of the octopus imaging facility to celebrate its 10th anniversary. J Microsc 2020; 281:3-15. [PMID: 33111321 DOI: 10.1111/jmi.12974] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Revised: 10/19/2020] [Accepted: 10/23/2020] [Indexed: 11/27/2022]
Abstract
Octopus (Optics Clustered to OutPut Unique Solutions) celebrated in June 2020 its 10th birthday. Based at Harwell, near Oxford, Octopus is an open access, peer reviewed, national imaging facility that offers successful U.K. applicants supported access to single molecule imaging, confocal microscopy, several flavours of superresolution imaging, light sheet microscopy, optical trapping and cryoscanning electron microscopy. Managed by a multidisciplinary team, Octopus has so far assisted >100 groups of U.K. and international researchers. Cross-fertilisation across fields proved to be a strong propeller of success underpinned by combining access to top-end instrumentation with a strong programme of imaging hardware and software developments. How Octopus was born, and highlights of the multidisciplinary output produced during its 10-year journey are reviewed below, with the aim of celebrating a myriad of collaborations with the U.K. scientific community, and reflecting on their scientific and societal impact.
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Affiliation(s)
- M L Martin-Fernandez
- Central Laser Facility, Research Complex at Harwell, Rutherford Appleton Laboratory, Harwell, Didcot, Oxford, U.K
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10
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The Photophysical Properties of Triisopropylsilyl-ethynylpentacene—A Molecule with an Unusually Large Singlet-Triplet Energy Gap—In Solution and Solid Phases. CHEMISTRY-SWITZERLAND 2020. [DOI: 10.3390/chemistry2020033] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The process of singlet-exciton fission (SEF) has attracted much attention of late. One of the most popular SEF compounds is TIPS-pentacene (TIPS-P, where TIPS = triisopropylsilylethynyl) but, despite its extensive use as both a reference and building block, its photophysical properties are not so well established. In particular, the triplet state excitation energy remains uncertain. Here, we report quantitative data and spectral characterization for excited-singlet and -triplet states in dilute solution. The triplet energy is determined to be 7940 ± 1200 cm−1 on the basis of sensitization studies using time-resolved photoacoustic calorimetry. The triplet quantum yield at the limit of low concentration and low laser intensity is only ca. 1%. Self-quenching occurs at high solute concentration where the fluorescence yield and lifetime decrease markedly relative to dilute solution but we were unable to detect excimer emission by steady-state spectroscopy. Short-lived fluorescence, free from excimer emission or phosphorescence, occurs for crystals of TIPS-P, most likely from amorphous domains.
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Rodriguez-Saona L, Aykas DP, Borba KR, Urtubia A. Miniaturization of optical sensors and their potential for high-throughput screening of foods. Curr Opin Food Sci 2020. [DOI: 10.1016/j.cofs.2020.04.008] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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