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Carravilla P, Andronico L, Schlegel J, Urem YB, Sjule E, Ragaller F, Weber F, Gurdap CO, Ascioglu Y, Sych T, Lorent J, Sezgin E. Measuring plasma membrane fluidity using confocal microscopy. Nat Protoc 2025:10.1038/s41596-024-01122-8. [PMID: 39972239 DOI: 10.1038/s41596-024-01122-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Accepted: 11/29/2024] [Indexed: 02/21/2025]
Abstract
Membrane fluidity is a crucial parameter for cellular physiology. Recent evidence suggests that fluidity varies between cell types and states and in diseases. As membrane fluidity has gradually become an important consideration in cell biology and biomedicine, it is essential to have reliable and quantitative ways to measure it in cells. In the past decade, there has been substantial progress both in chemical probes and in imaging tools to make membrane fluidity measurements easier and more reliable. We have recently established a robust pipeline, using confocal imaging and new environment-sensitive probes, that has been successfully used for several studies. Here we present our detailed protocol for membrane fluidity measurement, from labeling to imaging and image analysis. The protocol takes ~4 h and requires basic expertise in cell culture, wet lab and microscopy.
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Affiliation(s)
- Pablo Carravilla
- Science for Life Laboratory, Department of Women's and Children's Health, Karolinska Institutet, Solna, Sweden
| | - Luca Andronico
- Science for Life Laboratory, Department of Women's and Children's Health, Karolinska Institutet, Solna, Sweden
| | - Jan Schlegel
- Science for Life Laboratory, Department of Women's and Children's Health, Karolinska Institutet, Solna, Sweden
| | - Yagmur B Urem
- Science for Life Laboratory, Department of Women's and Children's Health, Karolinska Institutet, Solna, Sweden
| | - Ellen Sjule
- Science for Life Laboratory, Department of Women's and Children's Health, Karolinska Institutet, Solna, Sweden
| | - Franziska Ragaller
- Science for Life Laboratory, Department of Women's and Children's Health, Karolinska Institutet, Solna, Sweden
| | - Florian Weber
- Science for Life Laboratory, Department of Women's and Children's Health, Karolinska Institutet, Solna, Sweden
- Upper Austria University of Applied Sciences, Department Medical Engineering, Linz, Austria
| | - Cenk O Gurdap
- Science for Life Laboratory, Department of Women's and Children's Health, Karolinska Institutet, Solna, Sweden
| | - Yavuz Ascioglu
- Science for Life Laboratory, Department of Women's and Children's Health, Karolinska Institutet, Solna, Sweden
| | - Taras Sych
- Science for Life Laboratory, Department of Women's and Children's Health, Karolinska Institutet, Solna, Sweden
| | - Joseph Lorent
- Membrane Biochemistry and Biophysics, Bijvoet Center for Biomolecular Research, Department of Chemistry, Utrecht University, Utrecht, the Netherlands
- Cellular and Molecular Pharmacology, Translational Research from Experimental and Clinical Pharmacology to Treatment Optimization, Louvain Drug Research Institute, UCLouvain, Brussels, Belgium
| | - Erdinc Sezgin
- Science for Life Laboratory, Department of Women's and Children's Health, Karolinska Institutet, Solna, Sweden.
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2
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Pivovarenko VG, Klymchenko AS. Fluorescent Probes Based on Charge and Proton Transfer for Probing Biomolecular Environment. CHEM REC 2024; 24:e202300321. [PMID: 38158338 DOI: 10.1002/tcr.202300321] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2023] [Revised: 12/11/2023] [Indexed: 01/03/2024]
Abstract
Fluorescent probes for sensing fundamental properties of biomolecular environment, such as polarity and hydration, help to study assembly of lipids into biomembranes, sensing interactions of biomolecules and imaging physiological state of the cells. Here, we summarize major efforts in the development of probes based on two photophysical mechanisms: (i) an excited-state intramolecular charge transfer (ICT), which is represented by fluorescent solvatochromic dyes that shift their emission band maximum as a function of environment polarity and hydration; (ii) excited-state intramolecular proton transfer (ESIPT), with particular focus on 5-membered cyclic systems, represented by 3-hydroxyflavones, because they exhibit dual emission sensitive to the environment. For both ICT and ESIPT dyes, the design of the probes and their biological applications are summarized. Thus, dyes bearing amphiphilic anchors target lipid membranes and report their lipid organization, while targeting ligands direct them to specific organelles for sensing their local environment. The labels, amino acid and nucleic acid analogues inserted into biomolecules enable monitoring their interactions with membranes, proteins and nucleic acids. While ICT probes are relatively simple and robust environment-sensitive probes, ESIPT probes feature high information content due their dual emission. They constitute a powerful toolbox for addressing multitude of biological questions.
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Affiliation(s)
- Vasyl G Pivovarenko
- Department of Chemistry, Kyiv National Taras Shevchenko University, 01033, Kyiv, Ukraine
| | - Andrey S Klymchenko
- Laboratoire de Bioimagerie et Pathologies, UMR 7021 CNRS, ITI SysChem, Université de Strasbourg, 67401, Illkirch, France
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3
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Bernal-Escalante J, Molina-Villa T, López-Casillas F, Jiménez-Sánchez A. Mitochondria-Assisted Photooxidation to Track Singlet Oxygen at Homeostatic Membrane Microviscosity. ACS Sens 2022; 7:2303-2311. [PMID: 35913393 DOI: 10.1021/acssensors.2c00933] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Using intracellular-controlled photochemistry to track dynamic organelle processes is gaining attention due to its broad applications. However, most of the employed molecular probes usually require toxic photosensitizers and complex bioanalytical protocols. Here, the synthesis and performance of two new subcellular probes (MitoT1 and MitoT2) are described. The probes undergo photooxidation in the damaged tissue of zebrafish, a model system for tissue regeneration studies. Using high-resolution confocal microscopy and fluorescence spectroscopy, we combine the mentioned photoinduced interconversion at the homeostatic membrane viscosity to track singlet oxygen activity selectively. The continuous and real-time biosensing method reported here provides a new approach for simultaneously detecting endogenous singlet oxygen and viscosity status.
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Affiliation(s)
- Jasmine Bernal-Escalante
- Bioorganic Chemistry Laboratory (BioChela) at Instituto de Química, Universidad Nacional Autónoma de México (UNAM), Coyoacán, P.C. Ciudad Universitaria,, 04510 Ciudad de México, Circuito Exterior s/n, Mexico
| | - Tonatiuh Molina-Villa
- Laboratory of Developmental Biology at Instituto de Fisiología Celular, Universidad Nacional Autónoma de México (UNAM), Coyoacán, P.C., Ciudad Universitaria, 04510 Ciudad de México, Circuito Exterior s/n, Mexico
| | - Fernando López-Casillas
- Laboratory of Developmental Biology at Instituto de Fisiología Celular, Universidad Nacional Autónoma de México (UNAM), Coyoacán, P.C., Ciudad Universitaria, 04510 Ciudad de México, Circuito Exterior s/n, Mexico
| | - Arturo Jiménez-Sánchez
- Bioorganic Chemistry Laboratory (BioChela) at Instituto de Química, Universidad Nacional Autónoma de México (UNAM), Coyoacán, P.C. Ciudad Universitaria,, 04510 Ciudad de México, Circuito Exterior s/n, Mexico
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4
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Bu Y, Rong M, Wang J, Zhu X, Zhang J, Wang L, Yu Z, Tian Y, Zhou H, Xie Y. Cancer Cell Membrane Labeling Fluorescent Doppelganger Enables In Situ Photoactivated Membrane Dynamics Tracking via Two-Photon Fluorescence Imaging Microscopy. Anal Chem 2022; 94:8373-8381. [PMID: 35647787 DOI: 10.1021/acs.analchem.2c00874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Various suborganelles are delimited by lipid bilayers, in which high spatial and temporal morphological changes are essential to many physiological and pathological processes of cells. However, almost all the amphiphilic fluorescent molecules reported until now are not available for in situ precise tracking of membrane dynamics in cell apoptosis. Here, the MO (coumarin pyridine derivatives) was devised by engineering lipophilic coumarin and cationic pyridine salt, which not only lastingly anchored onto the plasma membrane in dark due to appropriate amphipathicity and electrostatic interactions but also in situ reflected the membrane damage and heterogeneity with secretion of extracellular vesicles (EVs) under reactive oxygen species regulation and was investigated by two-photon fluorescence lifetime imaging microscopy. This work opens up a new avenue for the development of plasma membrane staining and EV-based medicines for the early diagnosis and treatment of disease.
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Affiliation(s)
- Yingcui Bu
- Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials, Key Laboratory of Structure and Functional Regulation of Hybrid Materials (Anhui University) Ministry of Education, College of Chemistry and Chemical Engineering, Institute of Physical Science and Information Technology, Anhui University and Key Laboratory of Functional Inorganic Materials Chemistry of Anhui University, Hefei230601,P. R. China
| | - Mengtao Rong
- Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials, Key Laboratory of Structure and Functional Regulation of Hybrid Materials (Anhui University) Ministry of Education, College of Chemistry and Chemical Engineering, Institute of Physical Science and Information Technology, Anhui University and Key Laboratory of Functional Inorganic Materials Chemistry of Anhui University, Hefei230601,P. R. China
| | - Junjun Wang
- Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials, Key Laboratory of Structure and Functional Regulation of Hybrid Materials (Anhui University) Ministry of Education, College of Chemistry and Chemical Engineering, Institute of Physical Science and Information Technology, Anhui University and Key Laboratory of Functional Inorganic Materials Chemistry of Anhui University, Hefei230601,P. R. China
| | - Xiaojiao Zhu
- Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials, Key Laboratory of Structure and Functional Regulation of Hybrid Materials (Anhui University) Ministry of Education, College of Chemistry and Chemical Engineering, Institute of Physical Science and Information Technology, Anhui University and Key Laboratory of Functional Inorganic Materials Chemistry of Anhui University, Hefei230601,P. R. China
| | - Jie Zhang
- Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials, Key Laboratory of Structure and Functional Regulation of Hybrid Materials (Anhui University) Ministry of Education, College of Chemistry and Chemical Engineering, Institute of Physical Science and Information Technology, Anhui University and Key Laboratory of Functional Inorganic Materials Chemistry of Anhui University, Hefei230601,P. R. China
| | - Lianke Wang
- Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials, Key Laboratory of Structure and Functional Regulation of Hybrid Materials (Anhui University) Ministry of Education, College of Chemistry and Chemical Engineering, Institute of Physical Science and Information Technology, Anhui University and Key Laboratory of Functional Inorganic Materials Chemistry of Anhui University, Hefei230601,P. R. China
| | - Zhipeng Yu
- Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials, Key Laboratory of Structure and Functional Regulation of Hybrid Materials (Anhui University) Ministry of Education, College of Chemistry and Chemical Engineering, Institute of Physical Science and Information Technology, Anhui University and Key Laboratory of Functional Inorganic Materials Chemistry of Anhui University, Hefei230601,P. R. China
| | - Yupeng Tian
- Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials, Key Laboratory of Structure and Functional Regulation of Hybrid Materials (Anhui University) Ministry of Education, College of Chemistry and Chemical Engineering, Institute of Physical Science and Information Technology, Anhui University and Key Laboratory of Functional Inorganic Materials Chemistry of Anhui University, Hefei230601,P. R. China
| | - Hongping Zhou
- Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials, Key Laboratory of Structure and Functional Regulation of Hybrid Materials (Anhui University) Ministry of Education, College of Chemistry and Chemical Engineering, Institute of Physical Science and Information Technology, Anhui University and Key Laboratory of Functional Inorganic Materials Chemistry of Anhui University, Hefei230601,P. R. China
| | - Yi Xie
- Hefei National Laboratory for Physical Science at Microscale, iChem, University of Science and Technology of China, Hefei230051, P. R. China
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Yu H, Guo Y, Zhu W, Havener K, Zheng X. Recent advances in 1,8-naphthalimide-based small-molecule fluorescent probes for organelles imaging and tracking in living cells. Coord Chem Rev 2021. [DOI: 10.1016/j.ccr.2021.214019] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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6
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Danylchuk DI, Jouard PH, Klymchenko AS. Targeted Solvatochromic Fluorescent Probes for Imaging Lipid Order in Organelles under Oxidative and Mechanical Stress. J Am Chem Soc 2021; 143:912-924. [DOI: 10.1021/jacs.0c10972] [Citation(s) in RCA: 77] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Dmytro I. Danylchuk
- Laboratoire de Bioimagerie et Pathologies, UMR 7021 CNRS, Université de Strasbourg, 74 Route du Rhin, 67401 Illkirch, France
| | - Pierre-Henri Jouard
- Laboratoire de Bioimagerie et Pathologies, UMR 7021 CNRS, Université de Strasbourg, 74 Route du Rhin, 67401 Illkirch, France
| | - Andrey S. Klymchenko
- Laboratoire de Bioimagerie et Pathologies, UMR 7021 CNRS, Université de Strasbourg, 74 Route du Rhin, 67401 Illkirch, France
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7
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Li M, Fang W, Wang B, Du Y, Hou Y, Chen L, Cui S, Li Y, Yan X. A novel dual-site ICT/AIE fluorescent probe for detecting hypochlorite and polarity in living cells. NEW J CHEM 2021. [DOI: 10.1039/d1nj03558d] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A novel dual-site fluorescent probe (CTPA) was rationally designed and synthesized for the detection of hypochlorite (ClO−) and polarity.
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Affiliation(s)
- Mingrui Li
- School of Chemical Engineering and Technology, Tianjin University, Tianjin 300350, P. R. China
| | - Wangwang Fang
- Shaoxing Xingxin New Material Co., Ltd, Zhejiang 312369, P. R. China
| | - Bowei Wang
- School of Chemical Engineering and Technology, Tianjin University, Tianjin 300350, P. R. China
- Tianjin Engineering Research Center of Functional Fine Chemicals, Tianjin, P. R. China
- Zhejiang Shaoxing Institute of Tianjin University, Shaoxing, Zhejiang, China
| | - Yuchao Du
- School of Chemical Engineering and Technology, Tianjin University, Tianjin 300350, P. R. China
| | - Yuqing Hou
- Zhejiang Lonsen Group Co., Ltd, Zhejiang 312300, P. R. China
| | - Ligong Chen
- School of Chemical Engineering and Technology, Tianjin University, Tianjin 300350, P. R. China
- Tianjin Engineering Research Center of Functional Fine Chemicals, Tianjin, P. R. China
- Zhejiang Shaoxing Institute of Tianjin University, Shaoxing, Zhejiang, China
| | - Siqian Cui
- School of Chemical Engineering and Technology, Tianjin University, Tianjin 300350, P. R. China
| | - Yang Li
- School of Chemical Engineering and Technology, Tianjin University, Tianjin 300350, P. R. China
- Tianjin Engineering Research Center of Functional Fine Chemicals, Tianjin, P. R. China
| | - Xilong Yan
- School of Chemical Engineering and Technology, Tianjin University, Tianjin 300350, P. R. China
- Tianjin Engineering Research Center of Functional Fine Chemicals, Tianjin, P. R. China
- Zhejiang Shaoxing Institute of Tianjin University, Shaoxing, Zhejiang, China
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8
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Labra‐Vázquez P, Flores‐Cruz R, Galindo‐Hernández A, Cabrera‐González J, Guzmán‐Cedillo C, Jiménez‐Sánchez A, Lacroix PG, Santillan R, Farfán N, Núñez R. Tuning the Cell Uptake and Subcellular Distribution in BODIPY–Carboranyl Dyads: An Experimental and Theoretical Study. Chemistry 2020; 26:16530-16540. [PMID: 32608048 DOI: 10.1002/chem.202002600] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2020] [Indexed: 11/10/2022]
Affiliation(s)
- Pablo Labra‐Vázquez
- Facultad de Química Departamento de Química Orgánica Universidad Nacional Autónoma de México 04510 Ciudad de México México
- Laboratoire de Chimie de Coordination du CNRS 205 route de Narbonne 31077 Toulouse France
| | - Ricardo Flores‐Cruz
- Instituto de Química Universidad Nacional Autónoma de México 04510 Ciudad de México México
| | - Aylin Galindo‐Hernández
- Facultad de Química Departamento de Química Orgánica Universidad Nacional Autónoma de México 04510 Ciudad de México México
| | - Justo Cabrera‐González
- Institut de Ciència de Materials de Barcelona (ICMAB-CSIC) Campus de la UAB 08193 Bellaterra, Barcelona Spain
| | - Cristian Guzmán‐Cedillo
- Facultad de Química Departamento de Química Orgánica Universidad Nacional Autónoma de México 04510 Ciudad de México México
| | - Arturo Jiménez‐Sánchez
- Instituto de Química Universidad Nacional Autónoma de México 04510 Ciudad de México México
| | - Pascal G. Lacroix
- Laboratoire de Chimie de Coordination du CNRS 205 route de Narbonne 31077 Toulouse France
| | - Rosa Santillan
- Departamento de Química Centro de Investigación y de Estudios Avanzados del IPN Apdo. Postal 14-740 07000 Ciudad de México México
| | - Norberto Farfán
- Facultad de Química Departamento de Química Orgánica Universidad Nacional Autónoma de México 04510 Ciudad de México México
| | - Rosario Núñez
- Institut de Ciència de Materials de Barcelona (ICMAB-CSIC) Campus de la UAB 08193 Bellaterra, Barcelona Spain
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