Quantum Mechanics/Molecular Mechanics Study of the Sialyltransferase Reaction Mechanism

An α2,3-Sialyltransferase from Photobacterium phosphoreum with Broad Substrate Scope: Controlling Hydrolytic Activity by Directed Evolution

Defined sialoglycoconjugates are important molecular probes for studying the role of sialylated glycans in biological systems. We show that the α2,3-sialyltransferase from Photobacterium phosphoreum JT-ISH-467 (2,3SiaTpph ) tolerates a very broad substrate scope for modifications in the sialic acid part, including bulky amide variation, C5/C9 substitution, and C5 stereoinversion. To reduce the enzyme's hydrolytic activity, which erodes the product yield, an extensive structure-guided mutagenesis study identified three variants that show up to five times higher catalytic efficiency for sialyltransfer, up to ten times lower efficiency for substrate hydrolysis, and drastically reduced product hydrolysis. Variant 2,3SiaTpph (A151D) displayed the best performance overall in the synthesis of the GM3 trisaccharide (α2,3-Neu5Ac-Lac) from lactose in a one-pot, two-enzyme cascade. Our study demonstrates that several complementary solutions can be found to suppress the common problem of undesired hydrolysis activity of microbial GT80 sialyltransferases. The new enzymes are powerful catalysts for the synthesis of a wide variety of complex natural and new-to-nature sialoconjugates for biological studies.

An enzyme-like imprinted-polymer reactor with segregated quantum confinements for a tandem catalyst

This study was aimed at addressing the present challenge in tandem catalysts, as to how to furnish catalysts with tandem catalytic-ability without involving the precise control and man-made isolation of different types of catalytic sites. This objective was realized by constructing an enzyme-like imprinted-polymer reactor made of a unique polymer composite inspired from the compartmentalization of cells, a composite of a reactive imprinted polymer (containing acidic catalytic sites), and encapsulated metal nanoparticles (acting as catalytic reduction sites). The compilation of two types of catalytic sites with admissible access allowed this reactor to behave like compartments of cells for enzymatic reactions and hence catalytically constituted two quantum interaction-segregated domains, which led to the occurrence of catalytic tandem processes. Unlike the reported functional reactors that run tandem catalysis by largely depending on the precise control and man-made isolation of different types of catalytic sites, tandem catalysis in this reactor run naturally with segregated quantum confinements, which does not involve the precise control and isolation of different types of catalytic sites. This protocol presents new opportunities for the development of functional catalysts for complicated chemical processes.

This study was aimed at addressing the present challenge in tandem catalysts: how to furnish catalysts with tandem catalytic-ability without involving the precise control and man-made isolation of different types of catalytic sites.

Transition State-Based Sialyltransferase Inhibitors: Mimicking Oxocarbenium Ion by Simple Amide

In the new transition-state based sialyltransferase inhibitors, an amide group was placed at the corresponding C-2 position of CMP-sialic acid to mimic the geometry and charge distribution in the transition state, and simple aromatic or aliphatic rings were used instead of the sialic acid moiety. All synthetic compounds exhibited excellent α(2-6)-sialyltransferase inhibition, resulting in up to a 2600-fold higher affinity for the enzyme than CMP-Neu5Ac, suggesting that amide is a key element for simulating transition-state features.