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Fansher D, Besna JN, Fendri A, Pelletier JN. Choose Your Own Adventure: A Comprehensive Database of Reactions Catalyzed by Cytochrome P450 BM3 Variants. ACS Catal 2024; 14:5560-5592. [PMID: 38660610 PMCID: PMC11036407 DOI: 10.1021/acscatal.4c00086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Revised: 03/11/2024] [Accepted: 03/12/2024] [Indexed: 04/26/2024]
Abstract
Cytochrome P450 BM3 monooxygenase is the topic of extensive research as many researchers have evolved this enzyme to generate a variety of products. However, the abundance of information on increasingly diversified variants of P450 BM3 that catalyze a broad array of chemistry is not in a format that enables easy extraction and interpretation. We present a database that categorizes variants by their catalyzed reactions and includes details about substrates to provide reaction context. This database of >1500 P450 BM3 variants is downloadable and machine-readable and includes instructions to maximize ease of gathering information. The database allows rapid identification of commonly reported substitutions, aiding researchers who are unfamiliar with the enzyme in identifying starting points for enzyme engineering. For those actively engaged in engineering P450 BM3, the database, along with this review, provides a powerful and user-friendly platform to understand, predict, and identify the attributes of P450 BM3 variants, encouraging the further engineering of this enzyme.
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Affiliation(s)
- Douglas
J. Fansher
- Chemistry
Department, Université de Montréal, Montreal, QC, Canada H2V 0B3
- PROTEO,
The Québec Network for Research on Protein Function, Engineering,
and Applications, 201
Av. du Président-Kennedy, Montréal, QC, Canada H2X 3Y7
- CGCC,
Center in Green Chemistry and Catalysis, Montreal, QC, Canada H2V 0B3
| | - Jonathan N. Besna
- PROTEO,
The Québec Network for Research on Protein Function, Engineering,
and Applications, 201
Av. du Président-Kennedy, Montréal, QC, Canada H2X 3Y7
- CGCC,
Center in Green Chemistry and Catalysis, Montreal, QC, Canada H2V 0B3
- Department
of Biochemistry and Molecular Medicine, Université de Montréal, Montreal, QC, Canada H3T 1J4
| | - Ali Fendri
- Chemistry
Department, Université de Montréal, Montreal, QC, Canada H2V 0B3
- PROTEO,
The Québec Network for Research on Protein Function, Engineering,
and Applications, 201
Av. du Président-Kennedy, Montréal, QC, Canada H2X 3Y7
- CGCC,
Center in Green Chemistry and Catalysis, Montreal, QC, Canada H2V 0B3
| | - Joelle N. Pelletier
- Chemistry
Department, Université de Montréal, Montreal, QC, Canada H2V 0B3
- PROTEO,
The Québec Network for Research on Protein Function, Engineering,
and Applications, 201
Av. du Président-Kennedy, Montréal, QC, Canada H2X 3Y7
- CGCC,
Center in Green Chemistry and Catalysis, Montreal, QC, Canada H2V 0B3
- Department
of Biochemistry and Molecular Medicine, Université de Montréal, Montreal, QC, Canada H3T 1J4
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RASOULI H, ILIUTA I, BOUGIE F, GARNIER A, ILIUTA MC. Hybrid enzymatic CO2 capture process in intensified flat sheet membrane contactors with immobilized carbonic anhydrase. Sep Purif Technol 2022. [DOI: 10.1016/j.seppur.2022.120505] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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3
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Iliuta I, Iliuta MC. Intensified phenol and p-cresol biodegradation for wastewater treatment in countercurrent packed-bed column bioreactors. CHEMOSPHERE 2022; 286:131716. [PMID: 34343917 DOI: 10.1016/j.chemosphere.2021.131716] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2021] [Revised: 06/30/2021] [Accepted: 07/27/2021] [Indexed: 06/13/2023]
Abstract
An intensified biodegradation process in packed-bed column bioreactors (PBCB) with microbial cells attached to packing/micro-particles surface was proposed and simulated via a dynamic 3D model with continuity, momentum, and species (comprising biomicro-particles) balance equations in liquid/gas, accumulation of biomicro-particles in packed-bed, diffusion and enzymatic reaction within biofilm and liquid film. Phenol and phenol/p-cresol biological removal by Pseudomonas putida was chosen to discuss the enhanced biodegradation efficiency. The biodegradation in single/dual-substrate systems is significantly upgraded as biomass loading on micro-particles surface increases. Microbial cells addition to the surface of micro-particles is more efficient when the foremost extent of biomass is attached to packing via large biofilms with increased resistance to mass transfer, at low phenol concentrations and liquid velocities. These intensified biodegradation systems aim at maximizing the mass transfer in PBCB for treatment of wastewater having high phenols concentration, without reducing the residence time of liquid or diluting the effluent.
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Affiliation(s)
- Ion Iliuta
- Department of Chemical Engineering, Laval University, Québec, G1V 0A6, Canada
| | - Maria C Iliuta
- Department of Chemical Engineering, Laval University, Québec, G1V 0A6, Canada.
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4
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Valikhani D, Bolivar JM, Pelletier JN. An Overview of Cytochrome P450 Immobilization Strategies for Drug Metabolism Studies, Biosensing, and Biocatalytic Applications: Challenges and Opportunities. ACS Catal 2021. [DOI: 10.1021/acscatal.1c02017] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Donya Valikhani
- Department of Chemistry, Université de Montréal and Center for Green Chemistry and Catalysis (CGCC), 1375 Thérèse-Lavoie-Roux Ave., Montréal, Quebec H2 V 0B3, Canada
- PROTEO, The Québec Network for Research on Protein Function, Engineering and Applications, Québec City Quebec G1 V 0A6, Canada
| | - Juan M. Bolivar
- Chemical and Materials Engineering Department, Faculty of Chemical Sciences, Complutense University of Madrid, Complutense Ave., 28040 Madrid, Spain
| | - Joelle N. Pelletier
- Department of Chemistry, Université de Montréal and Center for Green Chemistry and Catalysis (CGCC), 1375 Thérèse-Lavoie-Roux Ave., Montréal, Quebec H2 V 0B3, Canada
- PROTEO, The Québec Network for Research on Protein Function, Engineering and Applications, Québec City Quebec G1 V 0A6, Canada
- Department of Biochemistry, Université de Montréal, 2900 Édouard-Montpetit ave, Montréal, Quebec H3T 1J4, Canada
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5
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Akhlaghi N, Najafpour-Darzi G. Multifunctional metal-chelated phosphonate/Fe3O4 magnetic nanocomposite particles for defeating antibiotic-resistant bacteria. POWDER TECHNOL 2021. [DOI: 10.1016/j.powtec.2021.01.078] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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6
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Awad G, Garnier A. Maximization of saturated fatty acids through the production of P450BM3 monooxygenase in the engineered Escherichia coli. FOOD AND BIOPRODUCTS PROCESSING 2021. [DOI: 10.1016/j.fbp.2021.01.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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7
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Iliuta I, Iliuta MC. Enhanced enzyme-based CO2 capture in countercurrent packed-bed column reactors. Sep Purif Technol 2020. [DOI: 10.1016/j.seppur.2020.116908] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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8
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Shen H, Song J, Zhou Z, Li M, Zhang R, Su P, Yang Y. DNA-Directed Immobilized Enzymes on Recoverable Magnetic Nanoparticles Shielded in Nucleotide Coordinated Polymers. Ind Eng Chem Res 2019. [DOI: 10.1021/acs.iecr.9b01341] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Hao Shen
- Beijing Key Laboratory of Environmentally Harmful Chemical Analysis, College of Science, Beijing University of Chemical Technology, Beijing, 100029, P. R. China
| | - Jiayi Song
- Beijing Key Laboratory of Environmentally Harmful Chemical Analysis, College of Science, Beijing University of Chemical Technology, Beijing, 100029, P. R. China
| | - Zixin Zhou
- Beijing Key Laboratory of Environmentally Harmful Chemical Analysis, College of Science, Beijing University of Chemical Technology, Beijing, 100029, P. R. China
| | - Mengqi Li
- Beijing Key Laboratory of Environmentally Harmful Chemical Analysis, College of Science, Beijing University of Chemical Technology, Beijing, 100029, P. R. China
| | - Ruiqi Zhang
- Beijing Key Laboratory of Environmentally Harmful Chemical Analysis, College of Science, Beijing University of Chemical Technology, Beijing, 100029, P. R. China
| | - Ping Su
- Beijing Key Laboratory of Environmentally Harmful Chemical Analysis, College of Science, Beijing University of Chemical Technology, Beijing, 100029, P. R. China
| | - Yi Yang
- Beijing Key Laboratory of Environmentally Harmful Chemical Analysis, College of Science, Beijing University of Chemical Technology, Beijing, 100029, P. R. China
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Bahrami A, Iliuta I, Garnier A, Larachi F, Vincent T, Iliuta MC. Kinetics of Enzymatic Hydroxylation by Free and MNPs-Immobilized NADH-Dependent Cytochrome P450 BM3 from Bacillus megaterium. Ind Eng Chem Res 2018. [DOI: 10.1021/acs.iecr.8b04513] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Atieh Bahrami
- Department of Chemical Engineering, Laval University, Québec, Canada G1V 0A6
| | - Ion Iliuta
- Department of Chemical Engineering, Laval University, Québec, Canada G1V 0A6
| | - Alain Garnier
- Department of Chemical Engineering, Laval University, Québec, Canada G1V 0A6
| | - Faïçal Larachi
- Department of Chemical Engineering, Laval University, Québec, Canada G1V 0A6
| | - Thierry Vincent
- Department of Chemical Engineering, Laval University, Québec, Canada G1V 0A6
| | - Maria C. Iliuta
- Department of Chemical Engineering, Laval University, Québec, Canada G1V 0A6
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KneŽević NŽ, Gadjanski I, Durand JO. Magnetic nanoarchitectures for cancer sensing, imaging and therapy. J Mater Chem B 2018; 7:9-23. [PMID: 32254946 DOI: 10.1039/c8tb02741b] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The use of magnetic nanoparticles for sensing and theranostics of cancer has grown substantially in the last decade. Since the pioneering studies, which reported magnetic nanoparticles for bio-applications more than fifteen years ago, nanomaterials have increased in complexity with different shapes (nanoflowers, nanospheres, nanocubes, nanostars etc.) and compositions (e.g. core-shell) of nanoparticles for an increase in the sensitivity (imaging or sensing) and efficiency through synergistic treatments such as hyperthermia and drug delivery. In this review, we describe recent examples concerning the use of magnetic nanoparticles for bio-applications, from the surface functionalization methods to the development of cancer sensors and nanosystems for magnetic resonance and other imaging methodologies. Multifunctional nanosystems (nanocomposites, core shell nanomaterials) for theranostic applications involving treatments such as hyperthermia, photodynamic therapy, targeted drug delivery, and gene silencing are also described. These nanomaterials could be the future of medicine, although their complexity raises concerns about their safety.
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Affiliation(s)
- Nikola Ž KneŽević
- BioSense Institute, University of Novi Sad, Dr Zorana Djindjica 1, Novi Sad 21000, Serbia
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Bahrami A, Garnier A, Larachi F, Iliuta MC. Covalent immobilization of cytochrome P450 BM3 (R966D/W1046S) on glutaraldehyde activated SPIONs. CAN J CHEM ENG 2018. [DOI: 10.1002/cjce.23208] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Atieh Bahrami
- Department of Chemical Engineering; Laval University; QC, G1V 0A6 Canada
| | - Alain Garnier
- Department of Chemical Engineering; Laval University; QC, G1V 0A6 Canada
| | - Faïçal Larachi
- Department of Chemical Engineering; Laval University; QC, G1V 0A6 Canada
| | - Maria C. Iliuta
- Department of Chemical Engineering; Laval University; QC, G1V 0A6 Canada
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