1
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Wu S, Li AY. Theoretical investigations into the bonding and separation properties of non-rigid, partially rigid, and rigid ligands derived from Et-Tol-PTA with trivalent lanthanides and actinides. Phys Chem Chem Phys 2024; 26:2205-2217. [PMID: 38164958 DOI: 10.1039/d3cp04717b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2024]
Abstract
The separation of trivalent actinide elements from lanthanide elements represents one of the most formidable challenges within the context of nuclear waste partitioning and transmutation (P&T) processes. Consequently, we embarked on a systematic investigation aimed at elucidating the bonding properties and thermodynamic behavior of a N-ethyl-N-tolyl-2-amide-1,10-phenanthroline (Et-Tol-PTA) ligand in conjunction with trivalent actinide and lanthanide elements. This investigation involved the utilization of various density functional theory (DFT) methods and a comparative analysis between small-core pseudopotential basis sets and all-electron basis sets. It was found that well-performing results were achieved using the PBE0 functional in both bond length and thermodynamic energy calculations, with minimal impact being exerted by the basis set on the results. Furthermore, an exploration was carried out into the bonding and thermodynamic properties of trivalent actinides and lanthanides with ligands derived from Et-Tol-PTA, encompassing non-rigid (La), partially rigid (Lb, Lc), and rigid (Ld) ligands. Thermodynamically, advantages in the separation of Am(III)/Eu(III) were exhibited by Lb and Lc ligands, while excellent performance in the separation of Am(III)/Cm(III) was demonstrated by the La ligand. Analyses conducted using quantum theory of atoms in molecules (QTAIM), reduced density gradient (RDG), and natural bond orbital (NBO) methodologies revealed the presence of partial covalent character in the bonds between oxygen (O) and metal (M), as well as between nitrogen (N) and metal (M), with a higher degree of covalent character being observed in O-Am and N-Am bonds compared to O-Cm/Eu and N-Cm/Eu interactions.
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Affiliation(s)
- Shouqiang Wu
- School of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, P. R. China.
| | - An Yong Li
- School of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, P. R. China.
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2
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Sachin AR, Gopakumar G, Brahmananda Rao CVS. Accurate Evaluation of Dispersion Energies at Coupled Cluster Level to Understand the Substituent Effects in Am(III) and Eu(III) Complexes. J Phys Chem A 2023; 127:6722-6731. [PMID: 37540583 DOI: 10.1021/acs.jpca.3c03027] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/06/2023]
Abstract
The effect of cyclic and aromatic substituents on the complexation behavior of phosphine oxide ligands with Am(III) and Eu(III) was investigated at density functional theory (DFT) and domain-based local pair natural orbital coupled-cluster (DLPNO-CC) levels. Combining DFT with accurate coupled cluster methods, we have evaluated the dispersion energy contributions to the complexation energies for trivalent Am and Eu complexes for the first time. Irrespective of the nature of substituents on the P atom, the electronic structure of the P═O group remains identical in all of the ligands. The study reveals the importance of dispersion interactions during complexation and is estimated to be more significant for Am(III) than for Eu(III) complexes.
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Affiliation(s)
- Aditya Ramesh Sachin
- Indira Gandhi Centre for Atomic Research, Kalpakkam 603102, Tamil Nadu India
- Homi Bhabha National Institute, Training School Complex, Anushakthinagar, Mumbai 400094, India
| | - Gopinadhanpillai Gopakumar
- Indira Gandhi Centre for Atomic Research, Kalpakkam 603102, Tamil Nadu India
- Homi Bhabha National Institute, Training School Complex, Anushakthinagar, Mumbai 400094, India
| | - Cherukuri Venkata Siva Brahmananda Rao
- Indira Gandhi Centre for Atomic Research, Kalpakkam 603102, Tamil Nadu India
- Homi Bhabha National Institute, Training School Complex, Anushakthinagar, Mumbai 400094, India
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3
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McElhany SJ, Summers TJ, Shiery RC, Cantu DC. Analysis of the First Ion Coordination Sphere: A Toolkit to Analyze the Coordination Sphere of Ions. J Chem Inf Model 2023; 63:2699-2706. [PMID: 37083437 DOI: 10.1021/acs.jcim.3c00294] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/22/2023]
Abstract
Rapid and accurate approaches to characterizing the coordination structure of an ion are important for designing ligands and quantifying structure-property trends. Here, we introduce AFICS (Analysis of the First Ion Coordination Sphere), a tool written in Python 3 for analyzing the structural and geometric features of the first coordination sphere of an ion over the course of molecular dynamics simulations. The principal feature of AFICS is its ability to quantify the distortion a coordination geometry undergoes compared to uniform polyhedra. This work applies the toolkit to analyze molecular dynamics simulations of the well-defined coordination structure of aqueous Cr3+ along with the more ambiguous structure of aqueous Eu3+ chelated to ethylenediaminetetraacetic acid. The tool is targeted for analyzing ions with fluxional or irregular coordination structures (e.g., solution structures of f-block elements) but is generalized such that it may be applied to other systems.
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Affiliation(s)
- Stuart J McElhany
- Department of Chemical and Materials Engineering, University of Nevada, Reno, Reno, Nevada 89557, United States
| | - Thomas J Summers
- Department of Chemical and Materials Engineering, University of Nevada, Reno, Reno, Nevada 89557, United States
| | - Richard C Shiery
- Department of Chemical and Materials Engineering, University of Nevada, Reno, Reno, Nevada 89557, United States
| | - David C Cantu
- Department of Chemical and Materials Engineering, University of Nevada, Reno, Reno, Nevada 89557, United States
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4
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Lu JB, Jiang XL, Hu HS, Li J. Norm-Conserving 4f-in-Core Pseudopotentials and Basis Sets Optimized for Trivalent Lanthanides (Ln = Ce-Lu). J Chem Theory Comput 2023; 19:82-96. [PMID: 36512750 DOI: 10.1021/acs.jctc.2c00922] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
We present here a set of scalar-relativistic norm-conserving 4f-in-core pseudopotentials, together with complementary valence-shell Gaussian basis sets, for the lanthanide (Ln) series (Ce-Lu). The Goedecker, Teter, and Hutter (GTH) formalism is adopted with the generalized gradient approximation (GGA) for the exchange-correlation Perdew-Burke-Ernzerhof (PBE) functional. The 4f-in-core pseudopotentials are built through attributing 4f-subconfiguration 4fn (n = 1-14) for Ln (Ln = Ce-Lu) into the atomic core region, making it possible to circumvent the difficulty of the description of the open 4fn valence shell. A wide variety of computational benchmarks and tests have been carried out on lanthanide systems including Ln3+-containing molecular complexes, aqueous solutions, and bulk solids to validate the accuracy, reliability, and efficiency of the optimized 4f-in-core GTH pseudopotentials and basis sets. The 4f-in-core GTH pseudopotentials successfully replicate the main features of lanthanide structural chemistry and reaction energetics, particularly for nonredox reactions. The chemical bonding features and solvation shells, hydrolysis energetics, acidity constants, and solid-state properties of selected lanthanide systems are also discussed in detail by utilizing these new 4f-in-core GTH pseudopotentials. This work bridges the idea of keeping highly localized 4f electrons in the atomic core and efficient pseudopotential formalism of GTH, thus providing a highly efficient approach for studying lanthanide chemistry in multi-scale modeling of constituent-wise and structurally complicated systems, including electronic structures of the condensed phase and first-principles molecular dynamics simulations.
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Affiliation(s)
- Jun-Bo Lu
- Department of Chemistry and Guangdong Provincial Key Laboratory of Catalytic Chemistry, Southern University of Science and Technology, Shenzhen 518055, China
| | - Xue-Lian Jiang
- Department of Chemistry and Guangdong Provincial Key Laboratory of Catalytic Chemistry, Southern University of Science and Technology, Shenzhen 518055, China
| | - Han-Shi Hu
- Department of Chemistry and Engineering Research Center of Advanced Rare-Earth Materials of Ministry of Education, Tsinghua University, Beijing 100084, China
| | - Jun Li
- Department of Chemistry and Guangdong Provincial Key Laboratory of Catalytic Chemistry, Southern University of Science and Technology, Shenzhen 518055, China.,Department of Chemistry and Engineering Research Center of Advanced Rare-Earth Materials of Ministry of Education, Tsinghua University, Beijing 100084, China
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5
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Gutorova SV, Matveev PI, Lemport PS, Novichkov DA, Gloriozov IP, Avagyan NA, Gudovannyy AO, Nelyubina YV, Roznyatovsky VA, Petrov VG, Lyssenko KA, Ustynyuk YA, Kalmykov SN, Nenajdenko VG. Solvation-Anionic Exchange Mechanism of Solvent Extraction: Enhanced U(VI) Uptake by Tetradentate Phenanthroline Ligands. Inorg Chem 2023; 62:487-496. [PMID: 36542782 DOI: 10.1021/acs.inorgchem.2c03571] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Phenanthroline diamides (L) demonstrated a unique ability to extract uranium from nitric acid solutions into a polar organic solvent forming complexes of 1:2 stoichiometry as tight ion pairs {[UO2LNO3]+[UO2(NO3)3]-} by a novel extraction mechanism, which is a combination of two already well-known mechanisms: solvation and ion-pair anion exchange. A UV-vis study was used to confirm the formation of such complexes directly in the organic phase. Moreover, chemical synthesis and single crystal growth were performed to confirm unambiguously the structure of the complexes in the solid state.
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Affiliation(s)
- Svetlana V Gutorova
- Department of Chemistry, Lomonosov Moscow State University, Leninskie gory 1 Bld. 3, Moscow 119991, Russia
| | - Petr I Matveev
- Department of Chemistry, Lomonosov Moscow State University, Leninskie gory 1 Bld. 3, Moscow 119991, Russia
| | - Pavel S Lemport
- Department of Chemistry, Lomonosov Moscow State University, Leninskie gory 1 Bld. 3, Moscow 119991, Russia
| | - Daniil A Novichkov
- Department of Chemistry, Lomonosov Moscow State University, Leninskie gory 1 Bld. 3, Moscow 119991, Russia
| | - Igor P Gloriozov
- Department of Chemistry, Lomonosov Moscow State University, Leninskie gory 1 Bld. 3, Moscow 119991, Russia
| | - Nane A Avagyan
- Department of Chemistry, Lomonosov Moscow State University, Leninskie gory 1 Bld. 3, Moscow 119991, Russia
| | - Alexey O Gudovannyy
- Department of Chemistry, Lomonosov Moscow State University, Leninskie gory 1 Bld. 3, Moscow 119991, Russia
| | - Yulia V Nelyubina
- A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Vavilova Street, 28, Moscow 119991, Russia
| | - Vitaly A Roznyatovsky
- Department of Chemistry, Lomonosov Moscow State University, Leninskie gory 1 Bld. 3, Moscow 119991, Russia
| | - Vladimir G Petrov
- Department of Chemistry, Lomonosov Moscow State University, Leninskie gory 1 Bld. 3, Moscow 119991, Russia
| | - Konstantin A Lyssenko
- Department of Chemistry, Lomonosov Moscow State University, Leninskie gory 1 Bld. 3, Moscow 119991, Russia.,National Research University Higher School of Economics, Myasnitskaya Street, 20, Moscow 101000, Russia
| | - Yuri A Ustynyuk
- Department of Chemistry, Lomonosov Moscow State University, Leninskie gory 1 Bld. 3, Moscow 119991, Russia
| | - Stepan N Kalmykov
- Department of Chemistry, Lomonosov Moscow State University, Leninskie gory 1 Bld. 3, Moscow 119991, Russia
| | - Valentine G Nenajdenko
- Department of Chemistry, Lomonosov Moscow State University, Leninskie gory 1 Bld. 3, Moscow 119991, Russia
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Ebenezer C, Solomon RV. Complexation of N‐Heterocyclic Substituted 1,10‐Phenanthroline‐2,9‐diamide with Am
3+
/Eu
3+
Ions for Nuclear Waste Water Treatment. ChemistrySelect 2022. [DOI: 10.1002/slct.202203535] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Cheriyan Ebenezer
- Department of Chemistry Madras Christian College (Autonomous) [Affiliated to the University of Madras Chennai 600 059 Tamil Nadu India
| | - Rajadurai Vijay Solomon
- Department of Chemistry Madras Christian College (Autonomous) [Affiliated to the University of Madras Chennai 600 059 Tamil Nadu India
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Gutorova SV, Matveev PI, Trigub AL, Lemport PS, Kalmykov SN. Evidence for the Perchlorate Anion Coordination in the Structure of Uranyl Cation Complex with N,O-Donor Ligands in a Solution: RMC-EXAFS Study. CRYSTALLOGR REP+ 2022. [DOI: 10.1134/s1063774522070203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
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8
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O'Brien RD, Summers TJ, Kaliakin DS, Cantu DC. The solution structures and relative stability constants of lanthanide-EDTA complexes predicted from computation. Phys Chem Chem Phys 2022; 24:10263-10271. [PMID: 35437564 DOI: 10.1039/d2cp01081j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Ligand selectivity to specific lanthanide (Ln) ions is key to the separation of rare earth elements from each other. Ligand selectivity can be quantified with relative stability constants (measured experimentally) or relative binding energies (calculated computationally). The relative stability constants of EDTA (ethylenediaminetetraacetic acid) with La3+, Eu3+, Gd3+, and Lu3+ were predicted from relative binding energies, which were quantified using electronic structure calculations with relativistic effects and based on the molecular structures of Ln-EDTA complexes in solution from density functional theory molecular dynamics simulations. The protonation state of an EDTA amine group was varied to study pH ∼7 and ∼11 conditions. Further, simulations at 25 °C and 90 °C were performed to elucidate how structures of Ln-EDTA complexes varying with temperature are related to complex stabilities at different pH conditions. Relative stability trends are predicted from computation for varying Ln3+ ions (La, Eu, Gd, Lu) with a single ligand (EDTA at pH ∼11), as well as for a single Ln3+ ion (La) with varying ligands (EDTA at pH ∼7 and ∼11). Changing the protonation state of an EDTA amine site significantly changes the solution structure of the Ln-EDTA complex resulting in a reduction of the complex stability. Increased Ln-ligand complex stability is correlated to reduced structural variations in solution upon an increase in temperature.
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Affiliation(s)
- Ravi D O'Brien
- Department of Chemical and Materials Engineering, University of Nevada, Reno, Reno, NV 89557, USA.
| | - Thomas J Summers
- Department of Chemical and Materials Engineering, University of Nevada, Reno, Reno, NV 89557, USA.
| | - Danil S Kaliakin
- Department of Chemical and Materials Engineering, University of Nevada, Reno, Reno, NV 89557, USA.
| | - David C Cantu
- Department of Chemical and Materials Engineering, University of Nevada, Reno, Reno, NV 89557, USA.
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9
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Yu X, Sergentu DC, Feng R, Autschbach J. Covalency of Trivalent Actinide Ions with Different Donor Ligands: Do Density Functional and Multiconfigurational Wavefunction Calculations Corroborate the Observed "Breaks"? Inorg Chem 2021; 60:17744-17757. [PMID: 34747167 DOI: 10.1021/acs.inorgchem.1c02374] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
A comprehensive ab initio study of periodic actinide-ligand bonding trends for trivalent actinides is performed. Relativistic density functional theory (DFT) and complete active-space (CAS) self-consistent field wavefunction calculations are used to dissect the chemical bonding in the [AnCl6]3-, [An(CN)6]3-, [An(NCS)6]3-, [An(S2PMe2)3], [An(DPA)3]3-, and [An(HOPO)]- series of actinide (An = U-Es) complexes. Except for some differences for the early actinide complexes with DPA, bond orders and excess 5f-shell populations from donation bonding show qualitatively similar trends in 5f n active-space CAS vs DFT calculations. The influence of spin-orbit coupling on donation bonding is small for the tested systems. Along the actinide series, chemically soft vs chemically harder ligands exhibit clear differences in bonding trends. There are pronounced changes in the 5f populations when moving from Pu to Am or Cm, which correlate with previously noted "breaks" in chemical trends. Bonding involving 5f becomes very weak beyond Cm/Bk. We propose that Cm(III) is a borderline case among the trivalent actinides that can be meaningfully considered to be involved in ground-state 5f covalent bonding.
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Affiliation(s)
- Xiaojuan Yu
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, New York 14260-3000, United States
| | - Dumitru-Claudiu Sergentu
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, New York 14260-3000, United States
| | - Rulin Feng
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, New York 14260-3000, United States
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, New York 14260-3000, United States
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