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Summers TJ, Sobrinho JA, de Bettencourt-Dias A, Kelly SD, Fulton JL, Cantu DC. Solution Structures of Europium Terpyridyl Complexes with Nitrate and Triflate Counterions in Acetonitrile. Inorg Chem 2023; 62:5207-5218. [PMID: 36940386 DOI: 10.1021/acs.inorgchem.3c00199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/22/2023]
Abstract
Lanthanide-ligand complexes are key components of technological applications, and their properties depend on their structures in the solution phase, which are challenging to resolve experimentally or computationally. The coordination structure of the Eu3+ ion in different coordination environments in acetonitrile is examined using ab initio molecular dynamics (AIMD) simulations and extended X-ray absorption fine structure (EXAFS) spectroscopy. AIMD simulations are conducted for the solvated Eu3+ ion in acetonitrile, both with or without a terpyridyl ligand, and in the presence of either triflate or nitrate counterions. EXAFS spectra are calculated directly from AIMD simulations and then compared to experimentally measured EXAFS spectra. In acetonitrile solution, both nitrate and triflate anions are shown to coordinate directly to the Eu3+ ion forming either ten- or eight-coordinate solvent complexes where the counterions are binding as bidentate or monodentate structures, respectively. Coordination of a terpyridyl ligand to the Eu3+ ion limits the available binding sites for the solvent and anions. In certain cases, the terpyridyl ligand excludes any solvent binding and limits the number of coordinated anions. The solution structure of the Eu-terpyridyl complex with nitrate counterions is shown to have a similar arrangement of Eu3+ coordinating molecules as the crystal structure. This study illustrates how a combination of AIMD and EXAFS can be used to determine how ligands, solvent, and counterions coordinate with the lanthanide ions in solution.
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Affiliation(s)
- Thomas J Summers
- Department of Chemical and Materials Engineering, University of Nevada, Reno, Reno, Nevada 89557-0388, United States
| | - Josiane A Sobrinho
- Department of Chemistry, University of Nevada, Reno, Reno, Nevada 89557-0705, United States
| | | | - Shelly D Kelly
- X-ray Science Division, Argonne National Laboratory, Argonne, Illinois 60439-4801, United States
| | - John L Fulton
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - David C Cantu
- Department of Chemical and Materials Engineering, University of Nevada, Reno, Reno, Nevada 89557-0388, United States
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2
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Servis MJ, Martinez-Baez E, Clark AE. Hierarchical phenomena in multicomponent liquids: simulation methods, analysis, chemistry. Phys Chem Chem Phys 2020; 22:9850-9874. [PMID: 32154813 DOI: 10.1039/d0cp00164c] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Complex, multicomponent, solutions have often been studied solely through the lens of specific applications of interest. Yet advances to both simulation methodologies (enhanced sampling, etc.) and analysis techniques (network analysis algorithms and others), are creating a trove of data that reveal transcending characteristics across vast compositional phase space. This perspective discusses technical considerations of the reliable and accurate simulations of complex solutions, followed by the advances to analysis algorithms that elucidate coupling of different length and timescale behavior (hierarchical phenomena). The different manifestations of hierarchical phenomena are presented across an array of solution environments, emphasizing fundamental and ongoing science questions. With a more advanced molecular understanding in hand, a quintessential application (solvent extraction) is discussed, where significant opportunities exist to re-imagine the technical scope of an established technology.
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Affiliation(s)
- Michael J Servis
- Department of Chemistry, Washington State University, Pullman, WA 99164, USA.
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3
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Zhou T, Martinez-Baez E, Schenter G, Clark AE. PageRank as a collective variable to study complex chemical transformations and their energy landscapes. J Chem Phys 2019; 150:134102. [PMID: 30954058 DOI: 10.1063/1.5082648] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A reduced set of reaction coordinates is often employed in chemistry to describe the collective change between reactants and products within the context of rare event theories and the exploration of energy landscapes. Yet selecting the proper collective variable becomes increasingly challenging as the systems under study become more complex. Recent advancement of new descriptions of collective molecular coordinates has included graph-theoretical metrics, including social permutation invariant and PageRank (PR) coordinates, based upon the network of interactions about molecules and atoms within a system. Herein we continue the development of PR by (1) presenting a new formulation that is continuous along a reaction path, (2) illustrating that the fluctuations in PR are demonstrative of the fundamental motions of the atoms/molecules, and (3) providing the analytical derivatives with respect to atomic coordinates. The latter is subsequently combined with a harmonic bias to create the potential of mean force (PMF). As an example, we first consider the transformation of tetrahedral [Al(OH)4](aq) - to octahedral [Al(OH)4(H2O)2](aq) - using the PR PMF. Second, we explore the interchange of contact ion pair and solvent separated ion pairs of aqueous Na⋯OH, where the distance-biased PMF is projected onto PR space. In turn, this reveals where solvent rearrangement has the most impact upon the reaction pathway.
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Affiliation(s)
- Tiecheng Zhou
- Materials Science and Engineering Program, Washington State University, Pullman, Washington 99164, USA
| | - Ernesto Martinez-Baez
- Department of Chemistry, Washington State University, Pullman, Washington 99164, USA
| | - Gregory Schenter
- Department of Chemistry, Washington State University, Pullman, Washington 99164, USA
| | - Aurora E Clark
- Materials Science and Engineering Program, Washington State University, Pullman, Washington 99164, USA
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Yu J, Ma J, Yang C, Yu H. Binding affinity of pyridines with Am III/Cm III elucidated by density functional theory calculations. Dalton Trans 2019; 48:1613-1623. [PMID: 30629054 DOI: 10.1039/c8dt04669g] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
In recent decades, N-heterocyclic ligands have been extensively used in the separation of lanthanides/actinides, whereas the selective extraction of amercium or curium has been very challenging. Using density functional theory calculations, this study is devoted to the investigation of the binding affinity of a series of modelling pyridine ligands with AmIII and CmIII. The structure-property correlations between the amercium and curium systems and the binding affinity were obtained, and promising strategies for efficient separation of AmIII/CmIII were proposed.
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Affiliation(s)
- Jie Yu
- Department of Chemistry and Centre for Atomic Engineering of Advanced Materials, Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials, Anhui University, Hefei, Anhui 230601, PR China.
| | - Jun Ma
- Institute of Nuclear Physics and Chemistry, China Academy of Engineering Physics, Mianyang 621900, China.
| | - Chuting Yang
- Institute of Nuclear Physics and Chemistry, China Academy of Engineering Physics, Mianyang 621900, China.
| | - Haizhu Yu
- Department of Chemistry and Centre for Atomic Engineering of Advanced Materials, Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials, Anhui University, Hefei, Anhui 230601, PR China.
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Affiliation(s)
- Teresa L. Mako
- Department of Chemistry, University of Rhode Island, 140 Flagg Road, Kingston, Rhode Island 02881, United States
| | - Joan M. Racicot
- Department of Chemistry, University of Rhode Island, 140 Flagg Road, Kingston, Rhode Island 02881, United States
| | - Mindy Levine
- Department of Chemistry, University of Rhode Island, 140 Flagg Road, Kingston, Rhode Island 02881, United States
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Kelley MP, Yang P, Clark SB, Clark AE. Competitive Interactions Within Cm(III) Solvation in Binary Water/Methanol Solutions. Inorg Chem 2018; 57:10050-10058. [PMID: 30067015 DOI: 10.1021/acs.inorgchem.8b01214] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Competitive forces exist in multicomponent solutions, and within electrolytes they consist of both ion-solvent and solvent-solvent interactions. These can influence a myriad of processes, including ligand complexation. In the case of water/alcohol solutions, recent work revealed an interesting dilemma regarding the overall solution dynamics and organization as compared to solute-solvent interactions. This is particularly true for highly charged ions in solution, whose ion-solvent interactions were demonstrated to be highly sensitive to the composition of the immediate solvation environment. Faster solvent exchange should be observed about the ion, considering that second-order Møller-Plesset perturbation theory predicts an average decrease in ion-solvent dissociation energy when methanol enters the first solvation shell of Cm3+(aq). Yet the addition of methanol to water causes the dynamic features of the hydrogen-bond network of the entire solution to slow. The apparent competition between these contrary forces was examined using a combination of electronic structure calculations with both ab initio and classical molecular dynamics simulations, using binary water/methanol solutions and Cm3+ as a representative solute. This combination of theoretical methods predicts that, among the competitive effects of the solvent-solvent and ion-solvent interactions, the solution-phase dynamics imparted by the addition of methanol to water kinetically restricts the solvation exchange rates about Cm3+ in these binary solutions.
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Affiliation(s)
- Morgan P Kelley
- Theoretical Division , Los Alamos National Laboratory , Los Alamos , New Mexico , United States
| | - Ping Yang
- Theoretical Division , Los Alamos National Laboratory , Los Alamos , New Mexico , United States
| | - Sue B Clark
- Pacific Northwest National Laboratory , Richland , Washington , United States
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Deblonde GJ, Kelley MP, Su J, Batista ER, Yang P, Booth CH, Abergel RJ. Spectroscopic and Computational Characterization of Diethylenetriaminepentaacetic Acid/Transplutonium Chelates: Evidencing Heterogeneity in the Heavy Actinide(III) Series. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201709183] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
| | - Morgan P. Kelley
- Theoretical Division Los Alamos National Laboratory Los Alamos NM 87545 USA
| | - Jing Su
- Theoretical Division Los Alamos National Laboratory Los Alamos NM 87545 USA
| | - Enrique R. Batista
- Theoretical Division Los Alamos National Laboratory Los Alamos NM 87545 USA
| | - Ping Yang
- Theoretical Division Los Alamos National Laboratory Los Alamos NM 87545 USA
| | - Corwin H. Booth
- Chemical Sciences Division Lawrence Berkeley National Laboratory Berkeley CA 94720 USA
| | - Rebecca J. Abergel
- Chemical Sciences Division Lawrence Berkeley National Laboratory Berkeley CA 94720 USA
- Department of Nuclear Engineering University of California, Berkeley Berkeley CA 94720 USA
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Kelley MP, Deblonde GJP, Su J, Booth CH, Abergel RJ, Batista ER, Yang P. Bond Covalency and Oxidation State of Actinide Ions Complexed with Therapeutic Chelating Agent 3,4,3-LI(1,2-HOPO). Inorg Chem 2018; 57:5352-5363. [DOI: 10.1021/acs.inorgchem.8b00345] [Citation(s) in RCA: 66] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Morgan P. Kelley
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87544, United States
| | - Gauthier J.-P. Deblonde
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Jing Su
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87544, United States
| | - Corwin H. Booth
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Rebecca J. Abergel
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Enrique R. Batista
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87544, United States
| | - Ping Yang
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87544, United States
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Deblonde GJP, Kelley MP, Su J, Batista ER, Yang P, Booth CH, Abergel RJ. Spectroscopic and Computational Characterization of Diethylenetriaminepentaacetic Acid/Transplutonium Chelates: Evidencing Heterogeneity in the Heavy Actinide(III) Series. Angew Chem Int Ed Engl 2018; 57:4521-4526. [PMID: 29473263 DOI: 10.1002/anie.201709183] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2017] [Revised: 11/01/2017] [Indexed: 11/11/2022]
Abstract
The chemistry of trivalent transplutonium ions (Am3+ , Cm3+ , Bk3+ , Cf3+ , Es3+ …) is usually perceived as monotonic and paralleling that of the trivalent lanthanide series. Herein, we present the first extended X-ray absorption fine structure (EXAFS) study performed on a series of aqueous heavy actinide chelates, extending past Cm. The results obtained on diethylenetriaminepentaacetic acid (DTPA) complexes of trivalent Am, Cm, Bk, and Cf show a break to much shorter metal-oxygen nearest-neighbor bond lengths in the case of Cf3+ . Corroborating those results, density functional theory calculations, extended to Es3+ , suggest that the shorter Cf-O and Es-O bonds could arise from the departure of the coordinated water molecule and contraction of the ligand around the metal relative to the other [MIII DTPA(H2 O)]2- (M=Am, Cm, Bk) complexes. Taken together, these experimental and theoretical results demonstrate inhomogeneity within the trivalent transplutonium series that has been insinuated and debated in recent years, and that may also be leveraged for future nuclear waste reprocessing technologies.
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Affiliation(s)
- Gauthier J-P Deblonde
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Morgan P Kelley
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA
| | - Jing Su
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA
| | - Enrique R Batista
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA
| | - Ping Yang
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA
| | - Corwin H Booth
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Rebecca J Abergel
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.,Department of Nuclear Engineering, University of California, Berkeley, Berkeley, CA, 94720, USA
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Kelley MP, Su J, Urban M, Luckey M, Batista ER, Yang P, Shafer JC. On the Origin of Covalent Bonding in Heavy Actinides. J Am Chem Soc 2017; 139:9901-9908. [PMID: 28657317 DOI: 10.1021/jacs.7b03251] [Citation(s) in RCA: 78] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
Recent reports have suggested the late actinides participate in more covalent interactions than the earlier actinides, yet the origin of this shift in chemistry is not understood. This report considers the chemistry of actinide dipicolinate complexes to identify why covalent interactions become more prominent for heavy actinides. A modest increase in measured actinide:dipicolinate stability constants is coincident with a significant increase in An 5f energy degeneracy with the dipicolinate molecular orbitals for Bk and Cf relative to Am and Cm. While the interactions in the actinide-dipicolinate complex are largely ionic, the decrease in 5f orbital energy across the series manifests in orbital-mixing and, hence, covalency driven by energy degeneracy. This observation suggests the origin of covalency in heavy actinide interactions stems from the degeneracy of 5f orbitals with ligand molecular orbitals rather than spatial orbital overlap. These findings suggest that the limiting radial extension of the 5f orbitals later in the actinide series could make the heavy actinides ideal elements to probe and tune effects of energy degeneracy driven covalency.
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Affiliation(s)
- Morgan P Kelley
- Theoretical Division, Los Alamos National Laboratory , Los Alamos, New Mexico 87545, United States
| | - Jing Su
- Theoretical Division, Los Alamos National Laboratory , Los Alamos, New Mexico 87545, United States
| | - Matthew Urban
- Department of Chemistry, Colorado School of Mines , Golden, Colorado 80401, United States
| | - Morgan Luckey
- Department of Chemistry, Colorado School of Mines , Golden, Colorado 80401, United States
| | - Enrique R Batista
- Theoretical Division, Los Alamos National Laboratory , Los Alamos, New Mexico 87545, United States
| | - Ping Yang
- Theoretical Division, Los Alamos National Laboratory , Los Alamos, New Mexico 87545, United States
| | - Jenifer C Shafer
- Department of Chemistry, Colorado School of Mines , Golden, Colorado 80401, United States
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Feng H, Gao W, Su L, Sun Z, Chen L. MD simulation study of the diffusion and local structure of n-alkanes in liquid and supercritical methanol at infinite dilution. J Mol Model 2017; 23:195. [PMID: 28560578 DOI: 10.1007/s00894-017-3366-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2016] [Accepted: 05/09/2017] [Indexed: 10/19/2022]
Abstract
The diffusion coefficients of 14 n-alkanes (ranging from methane to n-tetradecane) in liquid and supercritical methanol at infinite dilution (at a pressure of 10.5 MPa and at temperatures of 299 K and 515 K) were deduced via molecular dynamics simulations. Values for the radial distribution function, coordination number, and number of hydrogen bonds were then calculated to explore the local structure of each fluid. The flexibility of the n-alkane (as characterized by the computed dihedral distribution, end-to-end distance, and radius of gyration) was found to be a major influence and hydrogen bonding to be a minor influence on the local structure. Hydrogen bonding reduces the flexibility of the n-alkane, whereas increasing the temperature enhances its flexibility, with temperature having a greater effect than hydrogen bonding on flexibility. Graphical abstract The flexibility of the alkane is a major influence and the hydrogen bonding is a minor influence on the first solvation shell; the coordination numbers of long-chain n-alkanes in the first solvation shell are rather low.
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Affiliation(s)
- Huajie Feng
- School of Chemistry and Chemical Engineering, Hainan Normal University, Haikou, 571158, People's Republic of China
| | - Wei Gao
- School of Pharmacy, Guangdong Pharmaceutical University, Guangzhou, 510006, People's Republic of China
| | - Li Su
- Hainan Entry-Exit Inspection and Quarantine Technology Center, Haikou, 570311, People's Republic of China
| | - Zhenfan Sun
- School of Chemistry and Chemical Engineering, Hainan Normal University, Haikou, 571158, People's Republic of China.
| | - Liuping Chen
- KLGHEI of Environment and Energy Chemistry, School of Chemistry and Chemical Engineering, Sun Yat-sen University, Guangzhou, 510275, People's Republic of China.
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