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Osadchuk I, Luts HE, Zahharova A, Tamm T, Borovkov V. Controlling Chirogenic Effects in Porphyrin Based Supramolecular Systems: Theoretical Analysis Versus Experimental Observations. Chemphyschem 2024; 25:e202400104. [PMID: 38693766 DOI: 10.1002/cphc.202400104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 03/18/2024] [Indexed: 05/03/2024]
Abstract
Electronic circular dichroism (ECD) spectroscopy is a widely employed method for studying chiral analysis, requiring the presence of a chromophore close to a chiral centre. Porphyrinoids are found to be one of the best chromophoric systems serving for this purpose and enabling the application of ECD spectroscopy for chirality determination across diverse classes of organic compounds. Consequently, it is crucial to understand the induction mechanisms of ECD in the porphyrin-based complexes. The present study explores systematically the influence of secondary chromophores, bonded to an achiral zinc porphyrin or to chiral guest molecules, on the B-region of ECD spectra using the time-dependent density functional theory (TD-DFT) calculations. The study analyses the impact of change in both the conformation of achiral porphyrin (host) and change in position and conformation of chiral organic molecule (guest) on the B-band of ECD spectra (energy, intensity, sign of Cotton effect). Finally, conclusions made on model complexes are applied to published experimental data, contributing to a deeper understanding of various factors influencing ECD spectra in chiral systems. In addition, a computer program aimed to help rationalise ECD spectra by visualizing corresponding orbital energies, rotatory strengths, electric and magnetic transition moments, and angles between them, is presented.
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Affiliation(s)
- Irina Osadchuk
- Department of Chemistry and Biotechnology, Tallinn University of Technology, Akadeemia tee 15, 12618, Tallinn, Estonia
| | - Hanna-Eliisa Luts
- Department of Chemistry and Biotechnology, Tallinn University of Technology, Akadeemia tee 15, 12618, Tallinn, Estonia
| | - Aleksandra Zahharova
- Department of Chemistry and Biotechnology, Tallinn University of Technology, Akadeemia tee 15, 12618, Tallinn, Estonia
| | - Toomas Tamm
- Department of Chemistry and Biotechnology, Tallinn University of Technology, Akadeemia tee 15, 12618, Tallinn, Estonia
| | - Victor Borovkov
- Department of Chemistry and Biotechnology, Tallinn University of Technology, Akadeemia tee 15, 12618, Tallinn, Estonia
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Thuita DW, Brückner C. Metal Complexes of Porphyrinoids Containing Nonpyrrolic Heterocycles. Chem Rev 2022; 122:7990-8052. [PMID: 35302354 DOI: 10.1021/acs.chemrev.1c00694] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
The replacement of one or more pyrrolic building block(s) of a porphyrin by a nonpyrrolic heterocycle leads to the formation of so-called pyrrole-modified porphyrins (PMPs), porphyrinoids of broad structural variability. The wide range of coordination environments (type, number, charge, and architecture of the donor atoms) that the pyrrole-modified frameworks provide to the central metal ions, the frequent presence of donor atoms at their periphery, and their often observed nonplanarity or conformational flexibility distinguish the complexes of the PMPs clearly from those of the traditional square-planar, dianionic, N4-coordinating (hydro)porphyrins. Their different coordination properties suggest their utilization in areas beyond which regular metalloporphyrins are suitable. Following a general introduction to the synthetic methodologies available to generate pyrrole-modified porphyrins, their general structure, history, coordination chemistry, and optical properties, this Review highlights the chemical, electronic (optical), and structural differences of specific classes of metalloporphyrinoids containing nonpyrrolic heterocycles. The focus is on macrocycles with similar "tetrapyrrolic" architectures as porphyrins, thusly excluding the majority of expanded porphyrins. We highlight the relevance and application of these metal complexes in biological and technical fields as chemosensors, catalysts, photochemotherapeutics, or imaging agents. This Review provides an introduction to the field of metallo-PMPs as well as a comprehensive snapshot of the current state of the art of their synthesis, structures, and properties. It also aims to provide encouragement for the further study of these intriguing and structurally versatile metalloporphyrinoids.
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Affiliation(s)
- Damaris Waiyigo Thuita
- Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, United States
| | - Christian Brückner
- Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, United States
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Chaudhri N, Brückner C, Zeller M. Crystal structure of cis-7,8-dihydroxy-5,10,15,20-tetraphenylchlorin and its zinc(II)–ethylenediamine complex. Acta Crystallogr E Crystallogr Commun 2022; 78:392-398. [PMID: 35492263 PMCID: PMC8983991 DOI: 10.1107/s2056989022002729] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 03/10/2022] [Indexed: 11/30/2022]
Abstract
Normal mode structural decomposition (NSD) shows the title chlorin compounds to have considerable saddling deformation from planarity. The title chlorin, 2PhH2, hydrogen-bonded to dimethylaminopyridine (DMAP), C44H32N4O2·C7H10N2, and its corresponding zinc(II) complex, 2PhZn, axially coordinated to ethylenediamine (EDA), [Zn(C44H30N4O2)]·C2H8N2, were isolated and crystallized by adventitious reduction of the corresponding osmate esters by DMAP and EDA, respectively. Known since 1996 and, inter alia, used for the preparation of a wide range of (planar and non-planar) chlorin analogues (so-called pyrrole-modified porphyrins), their conformational analyses in the solid state are important benchmarks. Both macrocycles are only modestly distorted from planarity and both are slightly more non-planar than the corresponding dimethoxy-derivative, but less planar than a free-base meso-pentafluorophenyl-based osmate ester. NSD analyses provide quantitative and qualitative analyses of the distortion modes. One origin of the non-planarity is presumably the avoidance of the eclipsed configuration of the two vic–cis diols on the pyrroline moiety; the resulting deformation of the pyrroline translates in some cases into the macrocycle. The structure of 2PhH2 features voids making up ca 26% of the unit-cell volume filled with highly disordered solvate molecules (chloroform and hexanes). 2PhZn crystallized with a 13.6 (4)% occupied solvate methanol molecule.
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Osadchuk I, Aav R, Borovkov V, Clot E. Chirogenesis in Zinc Porphyrins: Theoretical Evaluation of Electronic Transitions, Controlling Structural Factors and Axial Ligation. Chemphyschem 2021; 22:1817-1833. [PMID: 34213815 PMCID: PMC8457158 DOI: 10.1002/cphc.202100345] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Revised: 06/24/2021] [Indexed: 12/15/2022]
Abstract
In the present work, sixteen different zinc porphyrins (possessing different meso substituents) with and without a chiral guest were modelled using DFT and TD-DFT approaches in order to understand the influence of various controlling factors on electronic circular dichroism (ECD) spectra. Two major aspects are influenced by these factors: excitation energy of the electronic transitions and their intensity. In the case of excitation energy, the influence increases in the following order: orientation of the peripheral substituents
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Affiliation(s)
- Irina Osadchuk
- Department of Chemistry and BiotechnologySchool of ScienceTallinn University of Technology AddressAkadeemia tee 1512618TallinnEstonia
- ICGMUniv MontpellierCNRS, ENSCMMontpellierFrance
| | - Riina Aav
- Department of Chemistry and BiotechnologySchool of ScienceTallinn University of Technology AddressAkadeemia tee 1512618TallinnEstonia
| | - Victor Borovkov
- Department of Chemistry and BiotechnologySchool of ScienceTallinn University of Technology AddressAkadeemia tee 1512618TallinnEstonia
| | - Eric Clot
- ICGMUniv MontpellierCNRS, ENSCMMontpellierFrance
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Churchill SBS, Sharma M, Brückner C, Zeller M. Crystal structure of 2,3-dimeth-oxy- meso-tetra-kis(penta-fluoro-phen-yl)morpholino-chlorin methyl-ene chloride 0.44-solvate. Acta Crystallogr E Crystallogr Commun 2020; 76:1222-1228. [PMID: 32844003 PMCID: PMC7405590 DOI: 10.1107/s2056989020009093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Accepted: 07/02/2020] [Indexed: 03/30/2024]
Abstract
The title morpholino-chlorin, C46H16F20N4O3, was crystallized from hexa-ne/methyl-ene chloride as its 0.44 methyl-ene chloride solvate, C46H16F20N4O3·0.44CH2Cl2. The morpholino-chlorin was synthesized by stepwise oxygen insertion into a porphyrin using a 'breaking and mending strategy': NaIO4-induced diol cleavage of the corresponding 2,3-di-hydroxy-chlorin with in situ methanol-induced, acid-catalyzed intra-molecular ring closure of the inter-mediate secochlorins bis-aldehyde. Formally, one of the pyrrolic building blocks was thus replaced by a 2,3-di-meth-oxy-morpholine moiety. Like other morpholino-chlorins, the macrocycle of the title compound adopts a ruffled conformation, and the modulation of the porphyrinic π-system chromophore induces a red-shift of its optical spectrum compared to its corresponding chlorin analog. Packing in the crystal is governed by inter-actions involving the fluorine atoms of the penta-fluoro-phenyl substituents, dominated by C-H⋯F inter-actions, and augmented by short fluorine⋯fluorine contacts, C-F⋯π inter-actions, and one severely slipped π-stacking inter-action between two penta-fluoro-phenyl rings. The solvate methyl-ene chloride mol-ecule is disordered over two independent positions around an inversion center with occupancies of two × 0.241 (5) and two × 0.199 (4), for a total site occupancy of 88%.
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Affiliation(s)
| | - Meenakshi Sharma
- Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, USA
| | - Christian Brückner
- Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, USA
| | - Matthias Zeller
- Department of Chemistry, Purdue University, 560 Oval Dr., W. Lafayette, IN 47907-2084, USA
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Hohlfeld BF, Flanagan KJ, Kulak N, Senge MO, Christmann M, Wiehe A. Synthesis of Porphyrinoids, BODIPYs, and (Dipyrrinato)ruthenium(II) Complexes from Prefunctionalized Dipyrromethanes. European J Org Chem 2019. [DOI: 10.1002/ejoc.201900530] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Benjamin F. Hohlfeld
- Institut für Chemie und Biochemie; Freie Universität Berlin; Takustr. 3 14195 Berlin Germany
- Institut für Chemie und Biochemie; Freie Universität Berlin; Fabeckstr. 34/36 14195 Berlin Germany
- biolitec research GmbH; Otto-Schott-Str. 15 07745 Jena Germany
| | - Keith J. Flanagan
- Medicinal Chemistry, Trinity Translational Medicine Institute; Trinity Centre for Health Sciences, Trinity College Dublin; The University of Dublin, St James's Hospital; 8 Dublin Ireland
| | - Nora Kulak
- Institut für Chemie und Biochemie; Freie Universität Berlin; Fabeckstr. 34/36 14195 Berlin Germany
| | - Mathias O. Senge
- Medicinal Chemistry, Trinity Translational Medicine Institute; Trinity Centre for Health Sciences, Trinity College Dublin; The University of Dublin, St James's Hospital; 8 Dublin Ireland
| | - Mathias Christmann
- Institut für Chemie und Biochemie; Freie Universität Berlin; Takustr. 3 14195 Berlin Germany
| | - Arno Wiehe
- Institut für Chemie und Biochemie; Freie Universität Berlin; Takustr. 3 14195 Berlin Germany
- biolitec research GmbH; Otto-Schott-Str. 15 07745 Jena Germany
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Hashimoto K, Koide T, Okawara T, Shimakoshi H, Hori Y, Shiota Y, Yoshizawa K, Hisaeda Y. Redox behaviour of the β-dihydroporphycene cobalt complex: study on the effect of hydrogenation of the ligand. Dalton Trans 2019; 48:872-881. [PMID: 30417918 DOI: 10.1039/c8dt03743d] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The dihydrogenated porphycene cobalt(ii) complex was synthesized and electrochemical experiments were carried out. The one-electron reduction of the complex proceeded at the central metal to afford the Co(i) species; in contrast, for the non-hydrogenated porphycene cobalt(ii) complex, the one-electron reduction gave the ligand reduced radical anion species. The reactivity of the one-electron reduced species with alkyl halides showed clear differences between the complexes. Hydrogenation of the β-position of the porphycene makes it possible to generate a central cobalt reduced species possessing a higher reactivity than the ligand reduced radical anion species.
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Affiliation(s)
- Koichi Hashimoto
- Department of Chemistry and Biochemistry, Graduate School of Engineering, Kyushu University, Moto-oka 744, Nishi-ku, Fukuoka-shi, Fukuoka 819-0395, Japan.
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Conradie J, Ghosh A. Energetics of Saddling versus Ruffling in Metalloporphyrins: Unusual Ruffled Dodecasubstituted Porphyrins. ACS OMEGA 2017; 2:6708-6714. [PMID: 31457262 PMCID: PMC6644939 DOI: 10.1021/acsomega.7b01004] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2017] [Accepted: 09/27/2017] [Indexed: 05/29/2023]
Abstract
Presented herein is a first major density functional theory (BP86/D3/STO-TZ2P) survey of the energetics of saddling versus ruffling for a wide range of dodecasubstituted metalloporphyrins with M = Ni, Cu, Zn, Pd, and Pt. For the majority of X8TPP (i.e., β-octasubstituted-meso-tetraphenylporphyrin), the calculations indicated a clear preference for the saddled conformation, consistent with a large body of experimental data. The preference for the saddled conformation relative to the ruffled conformation was found to vary from about ∼0.3-0.4 eV for Me8TPP derivatives up to 1 eV for I8TPP and (CF3)8TPP derivatives. For X = Ph, that is, dodecaphenylporphyrins, the saddled and the ruffled conformation are almost equienergetic, with even a slight preference for the ruffled conformation in some cases. This finding provides a satisfactory explanation for the X-ray crystallographic observation of both saddled and ruffled conformations for dodecaphenylporphyrin complexes as well as for spectroscopic evidence for conformational mobility of these complexes in solution. The calculations also indicate near-equienergetic saddled and ruffled conformations for meso-tetraacetylenyltetrabenzoporphyrins, again consonant with key crystallographic findings. By and large, both the energetics and nonplanar distortions of the metalloporphyrin derivatives correlated well with the Charton and Sterimol B1 steric parameters of the peripheral substituents.
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Affiliation(s)
- Jeanet Conradie
- Department
of Chemistry and Center for Theoretical and Computational Chemistry, UiT − The Arctic University of Norway, N-9037 Tromsø, Norway
- Department
of Chemistry, University of the Free State, PO Box 339, 9300 Bloemfontein, Republic of South Africa
| | - Abhik Ghosh
- Department
of Chemistry and Center for Theoretical and Computational Chemistry, UiT − The Arctic University of Norway, N-9037 Tromsø, Norway
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