The Effect of Solvent and Coordination Environment of Metal Source on the Self-Assembly Pathway of a Pd(II)-Mediated Coordination Capsule

Nested non-covalent interactions expand the functions of supramolecular polymer networks

Supramolecular polymer networks contain non-covalent cross-links that enable access to broadly tunable mechanical properties and stimuli-responsive behaviors; the incorporation of multiple unique non-covalent cross-links within such materials further expands their mechanical responses and functionality. To date, however, the design of such materials has been accomplished through discrete combinations of distinct interaction types in series, limiting materials design logic. Here we introduce the concept of leveraging "nested" supramolecular crosslinks, wherein two distinct types of non-covalent interactions exist in parallel, to control bulk material functions. To demonstrate this concept, we use polymer-linked Pd2L4 metal-organic cage (polyMOC) gels that form hollow metal-organic cage junctions through metal-ligand coordination and can exhibit well-defined host-guest binding within their cavity. In these "nested" supramolecular network junctions, the thermodynamics of host-guest interactions within the junctions affect the metal-ligand interactions that form those junctions, ultimately translating to substantial guest-dependent changes in bulk material properties that could not be achieved in traditional supramolecular networks with multiple interactions in series.

Assembly of Six Types of Heteroleptic Pd2L4 Cages under Kinetic Control

Heteroleptic assemblies composed of several kinds of building blocks have been seen in nature. It is still unclear how natural systems design and create such complicated assemblies selectively. Past efforts on multicomponent self-assembly of artificial metal-organic cages have mainly focused on finding a suitable combination of building blocks to lead to a single multicomponent self-assembly as the thermodynamically most stable product. Here, we present another approach to selectively produce multicomponent Pd(II)-based self-assemblies under kinetic control based on the selective ligand exchanges of weak Pd-L coordination bonds retaining the original orientation of the metal centers in a kinetically stabilized cyclic structure and on local reversibility given in certain areas of the energy landscape in the presence of the assist molecule that facilitates error correction of coordination bonds. The kinetic approach enabled us to build all six types of Pd2L4 cages and heteroleptic tetranuclear cages composed of three kinds of ditopic ligands. Although the cage complexes thus obtained are metastable, they are stable for 1 month or more at room temperature.

Theoretical and computational methodologies for understanding coordination self-assembly complexes

This perspective highlights three theoretical and computational methods to capture the coordination self-assembly processes at the molecular level: quantum chemical modeling, molecular dynamics, and reaction network analysis. These methods cover the different scales from the metal-ligand bond to a more global aspect, and approaches that are best suited to understand the coordination self-assembly from different perspectives are introduced. Theoretical and numerical researches based on these methods are not merely ways of interpreting the experimental studies but complementary to them.

Computational Modeling of Supramolecular Metallo-organic Cages-Challenges and Opportunities

Self-assembled metallo-organic cages have emerged as promising biomimetic platforms that can encapsulate whole substrates akin to an enzyme active site. Extensive experimental work has enabled access to a variety of structures, with a few notable examples showing catalytic behavior. However, computational investigations of metallo-organic cages are scarce, not least due to the challenges associated with their modeling and the lack of accurate and efficient protocols to evaluate these systems. In this review, we discuss key molecular principles governing the design of functional metallo-organic cages, from the assembly of building blocks through binding and catalysis. For each of these processes, computational protocols will be reviewed, considering their inherent strengths and weaknesses. We will demonstrate that while each approach may have its own specific pitfalls, they can be a powerful tool for rationalizing experimental observables and to guide synthetic efforts. To illustrate this point, we present several examples where modeling has helped to elucidate fundamental principles behind molecular recognition and reactivity. We highlight the importance of combining computational and experimental efforts to speed up supramolecular catalyst design while reducing time and resources.

Cyclization or bridging: which occurs faster is the key to the self-assembly mechanism of Pd6L3 coordination prisms

The self-assembly processes of Pd₆L₃ coordination prisms consisting of cis-protected Pd(II) complexes and porphyrin-based tetratopic ligands with four 3-pyridyl or 4-pyridyl groups (L) were investigated by experimental and numerical methods, QASAP (quantitative analysis of self-assembly process) and NASAP (numerical analysis of self-assembly process), respectively. It was found that contrary to common intuition macrocyclization takes place faster than the bridging reaction in the prism assembly and that the bridging reaction occurring before the macrocyclization tends to produce kinetically trapped species. A numerical simulation demonstrates that the relative magnitude of the rate constants between the macrocyclization and the bridging reaction is the key factor that determines whether the self-assembly leads to the thermodynamically most stable prism or to kinetically trapped species. Finding the key elementary reactions that largely affect the selection of the major assembly pathway is helpful to rationally control the products under kinetic control via modulation of the energy landscape.

Green solvent free epoxidation of olefins by a heterogenised hydrazone-dioxidotungsten(vi) coordination compound

A new mononuclear tungsten coordination compound, [WO₂L(CH₃OH)] (1), was synthesized by the reaction of WCl₆ and H₂L (H₂L = (E)-4-amino-N′-(5-bromo-2-hydroxybenzylidene)benzohydrazide) in methanol. Both the H₂L and compound 1 were characterized by elemental analysis and UV-Vis, FT-IR and NMR spectroscopic methods. The molecular structure of compound 1 was also determined by single crystal X-ray analysis which confirmed the compound is a mononuclear coordination compound of cis-dioxidotungsten(vi) containing a free amine functionality on the ligand. Compound 1 was supported on propionyl chloride-functionalized silica gel by amidification reaction to obtain a heterogeneous catalyst. The obtained heterogeneous catalyst was characterized by FT-IR spectroscopy, thermal gravimetric analysis (TGA), diffuse-reflectance spectroscopy (DRS), X-ray diffraction analysis (XRD), energy-dispersive X-ray spectroscopy (EDX), X-ray photoelectron spectroscopy (XPS) and scanning electron microscopy (SEM) and its catalytic activity was investigated in the epoxidation of olefins with hydrogen peroxide under solvent free conditions. The catalyst was successfully recovered several times and the recovered catalyst was also characterized by various methods including FT-IR, DRS, TGA, SEM and EDX analyses. The results indicated this heterogeneous catalytic system is an effective and selective catalyst for epoxidation of olefins and can be reused several times without significant change in its catalytic activity.

In this study the solvent free catalytic oxidation of olefins by a new silica supported hydrazone-dioxidotungsten(vi) coordination compound is investigated.

Inducing Social Self-Sorting in Organic Cages To Tune The Shape of The Internal Cavity

Many interesting target guest molecules have low symmetry, yet most methods for synthesising hosts result in highly symmetrical capsules. Methods of generating lower symmetry pores are thus required to maximise the binding affinity in host-guest complexes. Herein, we use mixtures of tetraaldehyde building blocks with cyclohexanediamine to access low-symmetry imine cages. Whether a low-energy cage is isolated can be correctly predicted from the thermodynamic preference observed in computational models. The stability of the observed structures depends on the geometrical match of the aldehyde building blocks. One bent aldehyde stands out as unable to assemble into high-symmetry cages-and the same aldehyde generates low-symmetry socially self-sorted cages when combined with a linear aldehyde. We exploit this finding to synthesise a family of low-symmetry cages containing heteroatoms, illustrating that pores of varying geometries and surface chemistries may be reliably accessed through computational prediction and self-sorting.

Self-assembly processes of octahedron-shaped Pd6L12 cages

Self-assembly processes of three octahedron-shaped [Pd₆L₁₂]¹²⁺ cages were investigated by an NMR-based quantitative approach (QASAP).

Energy-Landscape-Independent Kinetic Trap of an Incomplete Cage in the Self-Assembly of a Pd2 L4 Cage

A kinetic trap is the metastable species that is transiently or constantly produced during the reaction by trapping in a deep energy well. In most cases, the reactivity of kinetically trapped species is relatively low under the reaction conditions. Herein, we report another type of kinetically trapped species that is an incomplete cage (IC) intermediate produced during the self-assembly of a Pd₂ L₄ cage from ditopic ligand (L) and Pd^II ions with a certain lifetime, although IC has a high enough reactivity to be converted into the cage with the reaction of free L, which was confirmed by the reaction of the isolated IC and L under the self-assembly conditions. IC was kinetically trapped not because IC lies on the bottom of a deep energy well but because the conversion of the intermediates essential for the conversion of IC to the cage preferentially takes place; IC was kinetically trapped independently of the shape of the energy landscape of the self-assembly.

How does chiral self-sorting take place in the formation of homochiral Pd6L8 capsules consisting of cyclotriveratrylene-based chiral tritopic ligands?

The chiral self-sorting in the formation of homochiral Pd₆L₈ capsules consisting of cyclotriveratrylene (CTV)-based chiral tritopic ligands and Pd(ii) ions takes place through the initial formation of heterochiral Pd₆L₈X₂ (X indicates a leaving ligand) immature capsules (ICs) followed by the correction of chirality in the ICs assisted by the free tritopic ligands to lead to the homochiral capsules.

The chiral self-sorting process during the self-assembly of homochiral Pd₆L₈ capsules from cyclotriveratrylene (CTV)-based chiral tritopic ligands (L) and (Py*: 3-chloropyridine) was investigated by an NMR-based approach (QASAP: quantitative analysis of the self-assembly process). From the beginning to the formation of the immature capsules (ICs), enantiomeric ligands are distributed in the intermediates in a non-self-sorting manner, which leads to the isomers of heterochiral ICs over 99% yield. The mismatch of the chirality in the heterochiral ICs prevents intramolecular ligand exchanges in ICs to form the heterochiral capsules. The correction of the chirality in the heterochiral ICs (chiral self-sorting) takes place very slowly to finally lead to the homochiral capsules. The reason why the chiral self-sorting took place in the late stage of the self-assembly (after the formation of the heterochiral ICs) would be due to the relatively high flexibility of the CTV-based ligand.

Flexibility of components alters the self-assembly pathway of Pd2L4 coordination cages

The self-assembly process of a Pd₂L₄ cage consisting of flexible ditopic ligands and Pd(ii) ions was revealed by QASAP (quantitative analysis of self-assembly process), which enables one to obtain information about the intermediates transiently produced during the self-assembly as the average composition of all the intermediates. It was found that the dominant pathway to the cage is the formation of a submicrometre-sized sheet structure, which was characterized by dynamic light scattering (DLS) and scanning transmission electron microscopy (STEM), followed by the addition of free ditopic ligands to the Pd(ii) centres of the sheet structure to trigger the cage formation. This assembly process is completely different from that of a Pd₂L₄ cage composed of rigid ditopic ligands, indicating that the flexibility of the components strongly affects the self-assembly process.

Multiple Pathways in the Self-Assembly Process of a Pd4L8 Coordination Tetrahedron

The self-assembly of a Pd₄1₈ coordination tetrahedron (Tet) from a ditopic ligand, 1, and palladium(II) ions, [PdPy*₄]²⁺ (Py* = 3-chloropyridine), was investigated by a ¹H NMR-based quantitative approach (quantitative analysis of self-assembly process, QASAP), which allows one to monitor the average composition of the intermediates not observed by NMR spectroscopy. The self-assembly of Tet takes place mainly through three pathways and about half of the Tet structures were produced through the reaction of a kinetically produced Pd₃L₆ double-walled triangle (DWT) and 200-nm-sized large intermediates (Int^L). In two of the three pathways, the leaving ligand (Py*), which is not a component of Tet, catalytically assisted the self-assembly. Such a multiplicity of the self-assembly process of Tet suggests that molecular self-assembly takes place on an energy landscape like a protein-folding funnel.

Chiral effects on the final step of an octahedron-shaped coordination capsule self-assembly

The final step of the self-assembly of an octahedron-shaped coordination capsule was investigated by a novel theoretical method.

Two dominant self-assembly pathways to a Pd3L6 double-walled triangle

A Pd(ii)-linked double-walled triangle is assembled through the growth of single-walled chain-like intermediates followed by the macrocyclization and the formation of double-walls.

Quantitative Analysis of Self-Assembly Process of a Pd2 L4 Cage Consisting of Rigid Ditopic Ligands

The self-assembly process of a Pd₂ L₄ cage complex consisting of rigid ditopic ligands, in which two 3-pyridyl groups are connected to a benzene ring through acetylene bonds and Pd^II ions was revealed by a recently developed quantitative analysis of self-assembly process (QASAP), with which the self-assembly process of coordination assemblies can be investigated by monitoring the evolution with time of the average composition of all the intermediates. QASAP revealed that the rate-determining steps of the cage formation are the intramolecular ligand exchanges in the final stage of the self-assembly: [Pd₂ L₄ Py*₂ ]⁴⁺ →[Pd₂ L₄ Py*₁ ]⁴⁺ +Py* and [Pd₂ L₄ Py*₁ ]⁴⁺ →[Pd₂ L₄ ]⁴⁺ +Py* (Py*: 3-chloropyridine, which was used as a leaving ligand on the metal source). The energy barriers for the two reactions were determined to be 22.3 and 21.9 kcal mol^-1 , respectively. DFT calculations of the transition-state (TS) structures for the two steps indicated that the distortion of the trigonal-bipyramidal Pd^II center at the TS geometries increases the activation free energy of the two steps.