1
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Novotny J, Komorovsky S, Marek R. Paramagnetic Effects in NMR Spectroscopy of Transition-Metal Complexes: Principles and Chemical Concepts. Acc Chem Res 2024; 57:1467-1477. [PMID: 38687879 PMCID: PMC11112740 DOI: 10.1021/acs.accounts.3c00786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 04/14/2024] [Accepted: 04/15/2024] [Indexed: 05/02/2024]
Abstract
ConspectusMagnetic resonance techniques represent a fundamental class of spectroscopic methods used in physics, chemistry, biology, and medicine. Electron paramagnetic resonance (EPR) is an extremely powerful technique for characterizing systems with an open-shell electronic nature, whereas nuclear magnetic resonance (NMR) has traditionally been used to investigate diamagnetic (closed-shell) systems. However, these two techniques are tightly connected by the electron-nucleus hyperfine interaction operating in paramagnetic (open-shell) systems. Hyperfine interaction of the nuclear spin with unpaired electron(s) induces large temperature-dependent shifts of nuclear resonance frequencies that are designated as hyperfine NMR shifts (δHF).Three fundamental physical mechanisms shape the total hyperfine interaction: Fermi-contact, paramagnetic spin-orbit, and spin-dipolar. The corresponding hyperfine NMR contributions can be interpreted in terms of through-bond and through-space effects. In this Account, we provide an elemental theory behind the hyperfine interaction and NMR shifts and describe recent progress in understanding the structural and electronic principles underlying individual hyperfine terms.The Fermi-contact (FC) mechanism reflects the propagation of electron-spin density throughout the molecule and is proportional to the spin density at the nuclear position. As the imbalance in spin density can be thought of as originating at the paramagnetic metal center and being propagated to the observed nucleus via chemical bonds, FC is an excellent indicator of the bond character. The paramagnetic spin-orbit (PSO) mechanism originates in the orbital current density generated by the spin-orbit coupling interaction at the metal center. The PSO mechanism of the ligand NMR shift then reflects the transmission of the spin polarization through bonds, similar to the FC mechanism, but it also makes a substantial through-space contribution in long-range situations. In contrast, the spin-dipolar (SD) mechanism is relatively unimportant at short-range with significant spin polarization on the spectator atom. The PSO and SD mechanisms combine at long-range to form the so-called pseudocontact shift, traditionally used as a structural and dynamics probe in paramagnetic NMR (pNMR). Note that the PSO and SD terms both contribute to the isotropic NMR shift only at the relativistic spin-orbit level of theory.We demonstrate the advantages of calculating and analyzing the NMR shifts at relativistic two- and four-component levels of theory and present analytical tools and approaches based on perturbation theory. We show that paramagnetic NMR effects can be interpreted by spin-delocalization and spin-polarization mechanisms related to chemical bond concepts of electron conjugation in π-space and hyperconjugation in σ-space in the framework of the molecular orbital (MO) theory. Further, we discuss the effects of environment (supramolecular interactions, solvent, and crystal packing) and demonstrate applications of hyperfine shifts in determining the structure of paramagnetic Ru(III) compounds and their supramolecular host-guest complexes with macrocycles.In conclusion, we provide a short overview of possible pNMR applications in the analysis of spectra and electronic structure and perspectives in this field for a general chemical audience.
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Affiliation(s)
- Jan Novotny
- CEITEC
– Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-625 00 Brno, Czechia
- Department
of Chemistry, Faculty of Science, Masaryk
University, Kamenice 5, CZ-625
00 Brno, Czechia
| | - Stanislav Komorovsky
- Institute
of Inorganic Chemistry, Slovak Academy of
Sciences, Dúbravská cesta 9, SK-84536 Bratislava, Slovakia
| | - Radek Marek
- CEITEC
– Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-625 00 Brno, Czechia
- Department
of Chemistry, Faculty of Science, Masaryk
University, Kamenice 5, CZ-625
00 Brno, Czechia
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2
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Novotný J, Munzarová M, Marek R. Mechanisms of Ligand Hyperfine Coupling in Transition-Metal Complexes: σ and π Transmission Pathways. Inorg Chem 2024; 63:8580-8592. [PMID: 38690843 PMCID: PMC11094796 DOI: 10.1021/acs.inorgchem.3c04425] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 03/27/2024] [Accepted: 03/29/2024] [Indexed: 05/03/2024]
Abstract
Theoretical interpretation of hyperfine interactions was pioneered in the 1950s-1960s by the seminal works of McConnell, Karplus, and others for organic radicals and by Watson and Freeman for transition-metal (TM) complexes. In this work, we investigate a series of octahedral Ru(III) complexes with aromatic ligands to understand the mechanism of transmission of the spin density from the d-orbital of the metal to the s-orbitals of the ligand atoms. Spin densities and spin populations underlying ligand hyperfine couplings are analyzed in terms of π-conjugative or σ-hyperconjugative delocalization vs spin polarization based on symmetry considerations and restricted open-shell vs unrestricted wave function analysis. The transmission of spin density is shown to be most efficient in the case of symmetry-allowed π-conjugative delocalization, but when the π-conjugation is partially or fully symmetry-forbidden, it can be surpassed by σ-hyperconjugative delocalization. Despite a lower spin population of the ligand in σ-hyperconjugative transmission, the hyperfine couplings can be larger because of the direct involvement of the ligand s-orbitals in this delocalization pathway. We demonstrate a quantitative correlation between the hyperfine couplings of aromatic ligand atoms and the characteristics of the metal-ligand bond modulated by the trans substituent, a hyperfine trans effect.
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Affiliation(s)
- Jan Novotný
- CEITEC
− Central European Institute of Technology, Masaryk University, Kamenice 5, Brno CZ-62500, Czechia
- Department
of Chemistry, Faculty of Science, Masaryk
University, Kamenice
5, Brno CZ-62500, Czechia
| | - Markéta Munzarová
- Department
of Chemistry, Faculty of Science, Masaryk
University, Kamenice
5, Brno CZ-62500, Czechia
| | - Radek Marek
- CEITEC
− Central European Institute of Technology, Masaryk University, Kamenice 5, Brno CZ-62500, Czechia
- Department
of Chemistry, Faculty of Science, Masaryk
University, Kamenice
5, Brno CZ-62500, Czechia
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3
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Chyba J, Hruzíková A, Knor M, Pikulová P, Marková K, Novotný J, Marek R. Nature of NMR Shifts in Paramagnetic Octahedral Ru(III) Complexes with Axial Pyridine-Based Ligands. Inorg Chem 2023; 62:3381-3394. [PMID: 36763803 PMCID: PMC10017024 DOI: 10.1021/acs.inorgchem.2c03282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Indexed: 02/12/2023]
Abstract
In recent decades, transition-metal coordination compounds have been extensively studied for their antitumor and antimetastatic activities. In this work, we synthesized a set of symmetric and asymmetric Ru(III) and Rh(III) coordination compounds of the general structure (Na+/K+/PPh4+/LH+) [trans-MIIIL(eq)nL(ax)2]- (M = RuIII or RhIII; L(eq) = Cl, n = 4; L(eq) = ox, n = 2; L(ax) = 4-R-pyridine, R = CH3, H, C6H5, COOH, CF3, CN; L(ax) = DMSO-S) and systematically investigated their structure, stability, and NMR properties. 1H and 13C NMR spectra measured at various temperatures were used to break down the total NMR shifts into the orbital (temperature-independent) and hyperfine (temperature-dependent) contributions. The hyperfine NMR shifts for paramagnetic Ru(III) compounds were analyzed in detail using relativistic density functional theory (DFT). The effects of (i) the 4-R substituent of pyridine, (ii) the axial trans ligand L(ax), and (iii) the equatorial ligands L(eq) on the distribution of spin density reflected in the "through-bond" (contact) and the "through-space" (pseudocontact) contributions to the hyperfine NMR shifts of the individual atoms of the pyridine ligands are rationalized. Further, we demonstrate the large effects of the solvent on the hyperfine NMR shifts and discuss our observations in the general context of the paramagnetic NMR spectroscopy of transition-metal complexes.
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Affiliation(s)
- Jan Chyba
- CEITEC—Central
European Institute of Technology, Masaryk
University, Kamenice 5, CZ-62500 Brno, Czechia
- Department
of Chemistry, Faculty of Science, Masaryk
University, Kamenice
5, CZ-62500 Brno, Czechia
| | - Anna Hruzíková
- CEITEC—Central
European Institute of Technology, Masaryk
University, Kamenice 5, CZ-62500 Brno, Czechia
- Department
of Chemistry, Faculty of Science, Masaryk
University, Kamenice
5, CZ-62500 Brno, Czechia
| | - Michal Knor
- CEITEC—Central
European Institute of Technology, Masaryk
University, Kamenice 5, CZ-62500 Brno, Czechia
- Department
of Chemistry, Faculty of Science, Masaryk
University, Kamenice
5, CZ-62500 Brno, Czechia
| | - Petra Pikulová
- CEITEC—Central
European Institute of Technology, Masaryk
University, Kamenice 5, CZ-62500 Brno, Czechia
- Department
of Chemistry, Faculty of Science, Masaryk
University, Kamenice
5, CZ-62500 Brno, Czechia
| | - Kateřina Marková
- CEITEC—Central
European Institute of Technology, Masaryk
University, Kamenice 5, CZ-62500 Brno, Czechia
- Department
of Chemistry, Faculty of Science, Masaryk
University, Kamenice
5, CZ-62500 Brno, Czechia
| | - Jan Novotný
- CEITEC—Central
European Institute of Technology, Masaryk
University, Kamenice 5, CZ-62500 Brno, Czechia
- Department
of Chemistry, Faculty of Science, Masaryk
University, Kamenice
5, CZ-62500 Brno, Czechia
- National
Center for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, CZ-62500 Brno, Czechia
- Institute
of Inorganic Chemistry, Slovak Academy of
Science, Dúbravská
cesta 9, SK-84536 Bratislava, Slovakia
| | - Radek Marek
- CEITEC—Central
European Institute of Technology, Masaryk
University, Kamenice 5, CZ-62500 Brno, Czechia
- Department
of Chemistry, Faculty of Science, Masaryk
University, Kamenice
5, CZ-62500 Brno, Czechia
- National
Center for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, CZ-62500 Brno, Czechia
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4
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Eichhorn T, Kolbe F, Mišić S, Dimić D, Morgan I, Saoud M, Milenković D, Marković Z, Rüffer T, Dimitrić Marković J, Kaluđerović GN. Synthesis, Crystallographic Structure, Theoretical Analysis, Molecular Docking Studies, and Biological Activity Evaluation of Binuclear Ru(II)-1-Naphthylhydrazine Complex. Int J Mol Sci 2022; 24:ijms24010689. [PMID: 36614131 PMCID: PMC9821167 DOI: 10.3390/ijms24010689] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Revised: 12/15/2022] [Accepted: 12/25/2022] [Indexed: 01/03/2023] Open
Abstract
Ruthenium(II)-arene complexes have gained significant research interest due to their possible application in cancer therapy. In this contribution two new complexes are described, namely [{RuCl(η6-p-cymene)}2(μ-Cl)(μ-1-N,N'-naphthyl)]X (X = Cl, 1; PF6, 2), which were fully characterized by IR, NMR, and elemental microanalysis. Furthermore, the structure of 2 in the solid state was determined by a single crystal X-ray crystallographic study, confirming the composition of the crystals as 2·2MeOH. The Hirshfeld surface analysis was employed for the investigation of interactions that govern the crystal structure of 2·2MeOH. The structural data for 2 out of 2·2MeOH was used for the theoretical analysis of the cationic part [{RuCl(η6-p-cymene)}2(μ-Cl)(μ-1-N,N'-naphthyl)]+ (2a) which is common to both 1 and 2. The density functional theory, at B3LYP/6-31+G(d,p) basis set for H, C, N, and Cl atoms and LanL2DZ for Ru ions, was used for the optimization of the 2a structure. The natural bond orbital and quantum theory of atoms in molecules analyses were employed to quantify the intramolecular interactions. The reproduction of experimental IR and NMR spectra proved the applicability of the chosen level of theory. The binding of 1 to bovine serum albumin was examined by spectrofluorimetry and molecular docking, with complementary results obtained. Compound 1 acted as a radical scavenger towards DPPH• and HO• radicals, along with high activity towards cancer prostate and colon cell lines.
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Affiliation(s)
- Thomas Eichhorn
- Department of Engineering and Natural Sciences, University of Applied Sciences Merseburg, Eberhard-Leibnitz-Straße 2, 06217 Merseburg, Germany
| | - Franz Kolbe
- Department of Engineering and Natural Sciences, University of Applied Sciences Merseburg, Eberhard-Leibnitz-Straße 2, 06217 Merseburg, Germany
| | - Stefan Mišić
- Department of Engineering and Natural Sciences, University of Applied Sciences Merseburg, Eberhard-Leibnitz-Straße 2, 06217 Merseburg, Germany
- Faculty of Physical Chemistry, University of Belgrade, Studentski trg 12-16, 11000 Belgrade, Serbia
| | - Dušan Dimić
- Faculty of Physical Chemistry, University of Belgrade, Studentski trg 12-16, 11000 Belgrade, Serbia
| | - Ibrahim Morgan
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120 Halle (Saale), Germany
| | - Mohamad Saoud
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120 Halle (Saale), Germany
| | - Dejan Milenković
- Department of Science, Institute for Information Technologies, University of Kragujevac, Jovana Cvijića bb, 34000 Kragujevac, Serbia
| | - Zoran Marković
- Department of Science, Institute for Information Technologies, University of Kragujevac, Jovana Cvijića bb, 34000 Kragujevac, Serbia
| | - Tobias Rüffer
- Institute of Chemistry, Chemnitz University of Technology, Straße der Nationen 62, D-09111 Chemnitz, Germany
| | - Jasmina Dimitrić Marković
- Faculty of Physical Chemistry, University of Belgrade, Studentski trg 12-16, 11000 Belgrade, Serbia
- Correspondence: (J.D.M.); (G.N.K.)
| | - Goran N. Kaluđerović
- Department of Engineering and Natural Sciences, University of Applied Sciences Merseburg, Eberhard-Leibnitz-Straße 2, 06217 Merseburg, Germany
- Correspondence: (J.D.M.); (G.N.K.)
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5
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Novotný J, Jeremias L, Nimax P, Komorovsky S, Heinmaa I, Marek R. Crystal and Substituent Effects on Paramagnetic NMR Shifts in Transition-Metal Complexes. Inorg Chem 2021; 60:9368-9377. [PMID: 34133172 PMCID: PMC9597657 DOI: 10.1021/acs.inorgchem.1c00204] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
![]()
Nuclear magnetic resonance (NMR)
spectroscopy of paramagnetic molecules
provides detailed information about their molecular and electron-spin
structure. The paramagnetic NMR spectrum is a very rich source of
information about the hyperfine interaction between the atomic nuclei
and the unpaired electron density. The Fermi-contact contribution
to ligand hyperfine NMR shifts is particularly informative about the
nature of the metal–ligand bonding and the structural arrangements
of the ligands coordinated to the metal center. In this account, we
provide a detailed experimental and theoretical NMR study of compounds
of Cr(III) and Cu(II) coordinated with substituted acetylacetonate
(acac) ligands in the solid state. For the first time, we report the
experimental observation of extremely paramagnetically deshielded 13C NMR resonances for these compounds in the range of 900–1200
ppm. We demonstrate an excellent agreement between the experimental
NMR shifts and those calculated using relativistic density-functional
theory. Crystal packing is shown to significantly influence the NMR
shifts in the solid state, as demonstrated by theoretical calculations
of various supramolecular clusters. The resonances are assigned to
individual atoms in octahedral Cr(acac)3 and square-planar
Cu(acac)2 compounds and interpreted by different electron
configurations and magnetizations at the central metal atoms resulting
in different spin delocalizations and polarizations of the ligand
atoms. Further, effects of substituents on the 13C NMR
resonance of the ipso carbon atom reaching almost 700 ppm for Cr(acac)3 compounds are interpreted based on the analysis of Fermi-contact
hyperfine contributions. The
ligand NMR shifts in paramagnetic acetylacetonato Cr(III)
and Cu(II) complexes have been predicted and measured in the solid
state and interpreted by relativistic DFT calculations. The effects
of the metal atom, ligand, and crystal packing on the spin delocalization
and polarization reflected in the Fermi-contact contribution to the
hyperfine interaction are rationalized.
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Affiliation(s)
- Jan Novotný
- CEITEC-Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-625 00 Brno, Czechia.,Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, CZ-625 00 Brno, Czechia.,Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, SK-84536 Bratislava, Slovakia
| | - Lukáš Jeremias
- CEITEC-Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-625 00 Brno, Czechia.,Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, CZ-625 00 Brno, Czechia.,Department of Chemistry and Biochemistry, Faculty of AgriSciences, Mendel University, Zemědělská 1, CZ-613 00 Brno, Czechia
| | - Patrick Nimax
- CEITEC-Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-625 00 Brno, Czechia.,National Center for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, CZ-625 00 Brno, Czechia
| | - Stanislav Komorovsky
- Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, SK-84536 Bratislava, Slovakia
| | - Ivo Heinmaa
- National Institute of Chemical Physics and Biophysics, Akadeemia tee 23, EE-12618 Tallinn, Estonia
| | - Radek Marek
- CEITEC-Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-625 00 Brno, Czechia.,Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, CZ-625 00 Brno, Czechia.,National Center for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, CZ-625 00 Brno, Czechia
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6
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Autillo M, Islam MA, Héron J, Guérin L, Acher E, Tamain C, Illy MC, Moisy P, Colineau E, Griveau JC, Berthon C, Bolvin H. Temperature Dependence of 1 H Paramagnetic Chemical Shifts in Actinide Complexes, Beyond Bleaney's Theory: The An VI O 2 2+ -Dipicolinic Acid Complexes (An=Np, Pu) as an Example. Chemistry 2021; 27:7138-7153. [PMID: 33406305 DOI: 10.1002/chem.202005147] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Revised: 12/24/2020] [Indexed: 01/02/2023]
Abstract
Actinide +VI complexes ( A n V I = U V I , N p V I and P u V I ) with dipicolinic acid derivatives were synthesized and characterized by powder XRD, SQUID magnetometry and NMR spectroscopy. In addition, N p V I and P u V I complexes were described by first principles CAS based and two-component spin-restricted DFT methods. The analysis of the 1 H paramagnetic NMR chemical shifts for all protons of the ligands according to the X-rays structures shows that the Fermi contact contribution is negligible in agreement with spin density determined by unrestricted DFT. The magnetic susceptibility tensor is determined by combining SQUID, pNMR shifts and Evans' method. The SO-RASPT2 results fit well the experimental magnetic susceptibility and pNMR chemical shifts. The role of the counterions in the solid phase is pointed out; their presence impacts the magnetic properties of the N p V I complex. The temperature dependence of the pNMR chemical shifts has a strong 1 / T contribution, contrarily to Bleaney's theory for lanthanide complexes. The fitting of the temperature dependence of the pNMR chemical shifts and SQUID magnetic susceptibility by a two-Kramers-doublet model for the N p V I complex and a non-Kramers-doublet model for the P u V I complex allows for the experimental evaluation of energy gaps and magnetic moments of the paramagnetic center.
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Affiliation(s)
- Matthieu Autillo
- CEA, DES, ISEC, DMRC, Univ Montpellier, 30207, Bagnols sur Cèze, France
| | - Md Ashraful Islam
- Laboratoire de Chimie et Physique Quantiques, CNRS, Université Toulouse III, 118 route de Narbonne, 31062, Toulouse, France
| | - Julie Héron
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, P.O. Box 1033, Blindern, 0315, Oslo, Norway
| | - Laetitia Guérin
- CEA, DES, ISEC, DMRC, Univ Montpellier, 30207, Bagnols sur Cèze, France
| | - Eleonor Acher
- CEA, DES, ISEC, DMRC, Univ Montpellier, 30207, Bagnols sur Cèze, France
| | - Christelle Tamain
- CEA, DES, ISEC, DMRC, Univ Montpellier, 30207, Bagnols sur Cèze, France
| | - Marie-Claire Illy
- CEA, DES, ISEC, DMRC, Univ Montpellier, 30207, Bagnols sur Cèze, France.,Planitec, CEA Marcoule, 30207, Bagnols/Cèze, France
| | - Philippe Moisy
- CEA, DES, ISEC, DMRC, Univ Montpellier, 30207, Bagnols sur Cèze, France
| | - Eric Colineau
- European Commission Joint Research Centre (JRC), 76125, Karlsruhe, Germany
| | | | - Claude Berthon
- CEA, DES, ISEC, DMRC, Univ Montpellier, 30207, Bagnols sur Cèze, France
| | - Hélène Bolvin
- Laboratoire de Chimie et Physique Quantiques, CNRS, Université Toulouse III, 118 route de Narbonne, 31062, Toulouse, France
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7
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Malali S, Chyba J, Knor M, Horní M, Nečas M, Novotný J, Marek R. Zwitterionic Ru(III) Complexes: Stability of Metal-Ligand Bond and Host-Guest Binding with Cucurbit[7]uril. Inorg Chem 2020; 59:10185-10196. [PMID: 32633504 DOI: 10.1021/acs.inorgchem.0c01328] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
A wide range of ruthenium-based coordination compounds have been reported to possess potential as metallodrugs with anticancer or antimetastatic activity. In this work, we synthesized a set of new zwitterionic Ru(III) compounds bearing ligands derived from N-alkyl (R) systems based on pyridine, 4,4'-bipyridine, or 1,4-diazabicyclo[2.2.2]octane (DABCO). The effects of the ligand(s) and their environment on the coordination stability have been investigated. Whereas the [DABCO-R]+ ligand is shown to be easily split out of a negative [RuCl4]- core, positively charged R-pyridine and R-bipyridine ligands form somewhat more stable Ru(III) complexes and can be used as supramolecular anchors for binding with macrocycles. Therefore, supramolecular host-guest assemblies between the stable zwitterionic Ru(III) guests and the cucurbit[7]uril host were investigated and characterized in detail by using NMR spectroscopy and single-crystal X-ray diffraction. Paramagnetic 1H NMR experiments supplemented by relativistic DFT calculations of the structure and hyperfine NMR shifts were performed to determine the host-guest binding modes in solution. In contrast to the intramolecular hyperfine shifts, dominated by the through-bond Fermi-contact mechanism, supramolecular hyperfine shifts were shown to depend on the "through-space" spin-dipole contributions with structural trends being satisfactorily reproduced by a simple point-dipole approximation.
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Affiliation(s)
- Sanaz Malali
- CEITEC - Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-62500 Brno, Czechia.,Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, CZ-62500 Brno, Czechia
| | - Jan Chyba
- CEITEC - Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-62500 Brno, Czechia
| | - Michal Knor
- CEITEC - Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-62500 Brno, Czechia.,Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, CZ-62500 Brno, Czechia
| | - Michal Horní
- CEITEC - Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-62500 Brno, Czechia.,Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, CZ-62500 Brno, Czechia
| | - Marek Nečas
- CEITEC - Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-62500 Brno, Czechia.,Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, CZ-62500 Brno, Czechia
| | - Jan Novotný
- CEITEC - Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-62500 Brno, Czechia.,National Center for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, CZ-62500 Brno, Czechia
| | - Radek Marek
- CEITEC - Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-62500 Brno, Czechia.,Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, CZ-62500 Brno, Czechia.,National Center for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, CZ-62500 Brno, Czechia
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8
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Repisky M, Komorovsky S, Kadek M, Konecny L, Ekström U, Malkin E, Kaupp M, Ruud K, Malkina OL, Malkin VG. ReSpect: Relativistic spectroscopy DFT program package. J Chem Phys 2020; 152:184101. [DOI: 10.1063/5.0005094] [Citation(s) in RCA: 47] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Affiliation(s)
- Michal Repisky
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, UiT The Arctic University of Norway, N-9037 Tromsø, Norway
| | - Stanislav Komorovsky
- Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dubravska cesta 9, SK-84536 Bratislava, Slovakia
| | - Marius Kadek
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, UiT The Arctic University of Norway, N-9037 Tromsø, Norway
| | - Lukas Konecny
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, UiT The Arctic University of Norway, N-9037 Tromsø, Norway
| | - Ulf Ekström
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, N-0315 Oslo, Norway
| | - Elena Malkin
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, UiT The Arctic University of Norway, N-9037 Tromsø, Norway
| | - Martin Kaupp
- Technische Universität Berlin, Institute of Chemistry, Strasse des 17 Juni 135, D-10623 Berlin, Germany
| | - Kenneth Ruud
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, UiT The Arctic University of Norway, N-9037 Tromsø, Norway
| | - Olga L. Malkina
- Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dubravska cesta 9, SK-84536 Bratislava, Slovakia
| | - Vladimir G. Malkin
- Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dubravska cesta 9, SK-84536 Bratislava, Slovakia
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9
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Andersen ABA, Pyykkönen A, Jensen HJA, McKee V, Vaara J, Nielsen UG. Remarkable reversal of 13C-NMR assignment in d 1, d 2 compared to d 8, d 9 acetylacetonate complexes: analysis and explanation based on solid-state MAS NMR and computations. Phys Chem Chem Phys 2020; 22:8048-8059. [PMID: 32239061 DOI: 10.1039/d0cp00980f] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
13C solid-state MAS NMR spectra of a series of paramagnetic metal acetylacetonate complexes; [VO(acac)2] (d1, S = ½), [V(acac)3] (d2, S = 1), [Ni(acac)2(H2O)2] (d8, S = 1), and [Cu(acac)2] (d9, S = ½), were assigned using modern NMR shielding calculations. This provided a reliable assignment of the chemical shifts and a qualitative insight into the hyperfine couplings. Our results show a reversal of the isotropic 13C shifts, δiso(13C), for CH3 and CO between the d1 and d2versus the d8 and d9 acetylacetonate complexes. The CH3 shifts change from about -150 ppm (d1,2) to roughly 1000 ppm (d8,9), whereas the CO shifts decrease from 800 ppm to about 150 ppm for d1,2 and d8,9, respectively. This was rationalized by comparison of total spin-density plots and computed contact couplings to those corresponding to singly occupied molecular orbitals (SOMOs). This revealed the interplay between spin delocalization of the SOMOs and spin polarization of the lower-energy MOs, influenced by both the molecular symmetry and the d-electron configuration. A large positive chemical shift results from spin delocalization and spin polarization acting in the same direction, whereas their cancellation corresponds to a small shift. The SOMO(s) for the d8 and d9 complexes are σ-like, implying spin-delocalization on the CH3 and CO groups of the acac ligand, cancelled only for CO by spin polarization. In contrast, the SOMOs of the d1 and d2 systems are π-like and a large CO-shift results from spin polarization, which accounts for the reversed assignment of δiso(13C) for CH3 and CO.
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Affiliation(s)
- Anders B A Andersen
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230 Odense, Denmark.
| | - Ari Pyykkönen
- NMR Research Unit, University of Oulu, FI-90014, Finland
| | - Hans Jørgen Aa Jensen
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230 Odense, Denmark.
| | - Vickie McKee
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230 Odense, Denmark. and School of Chemical Sciences, Dublin City University, Glasnevin, Dublin 9, Ireland
| | - Juha Vaara
- NMR Research Unit, University of Oulu, FI-90014, Finland
| | - Ulla Gro Nielsen
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230 Odense, Denmark.
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10
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Sojka M, Fojtu M, Fialova J, Masarik M, Necas M, Marek R. Locked and Loaded: Ruthenium(II)-Capped Cucurbit[ n]uril-Based Rotaxanes with Antimetastatic Properties. Inorg Chem 2019; 58:10861-10870. [PMID: 31355636 DOI: 10.1021/acs.inorgchem.9b01203] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
We report here the first coupling of Ru(II) units with cucurbit[6/7]uril-based pseudorotaxane ligands meant for biological application. The resulting ruthenium-capped rotaxanes were fully characterized, and a structure of one supramolecular system was determined by X-ray diffraction. Because the biological properties of Ru-based metallodrugs are tightly linked to the ligand-exchange processes, the effect of salt concentration on the hydrolysis of chlorides from the Ru(II) center was monitored by using 1H NMR spectroscopy. The biological activity of Ru(II)-based rotaxanes was evaluated for three selected mammalian breast cell lines, HBL-100, MCF-7, and MDA-MB-231. The antimetastatic activity of the assembled cationic Ru(II)-rotaxane systems, evaluated in migration assays against MCF-7 and MDA-MB-231 cell lines, is notably enhanced compared to that of RAPTA-C, a reference that was used. The indicated synergistic effect of combining Ru(II) with a pseudorotaxane unit opens a new direction in searching for anticancer supramolecular metallodrugs.
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Affiliation(s)
- Martin Sojka
- Department of Chemistry, Faculty of Science , Masaryk University , Kamenice 5 , CZ-62500 Brno , Czechia.,CEITEC-Central European Institute of Technology , Masaryk University , Kamenice 5 , CZ-62500 Brno , Czechia
| | - Michaela Fojtu
- CEITEC-Central European Institute of Technology , Masaryk University , Kamenice 5 , CZ-62500 Brno , Czechia.,Department of Pathological Physiology, Faculty of Medicine , Masaryk University , Kamenice 5 , CZ-62500 Brno , Czechia.,Department of Physiology, Faculty of Medicine , Masaryk University , Kamenice 5 , CZ-62500 Brno , Czechia
| | - Jindriska Fialova
- Department of Physiology, Faculty of Medicine , Masaryk University , Kamenice 5 , CZ-62500 Brno , Czechia
| | - Michal Masarik
- CEITEC-Central European Institute of Technology , Masaryk University , Kamenice 5 , CZ-62500 Brno , Czechia.,Department of Pathological Physiology, Faculty of Medicine , Masaryk University , Kamenice 5 , CZ-62500 Brno , Czechia.,Department of Physiology, Faculty of Medicine , Masaryk University , Kamenice 5 , CZ-62500 Brno , Czechia
| | - Marek Necas
- Department of Chemistry, Faculty of Science , Masaryk University , Kamenice 5 , CZ-62500 Brno , Czechia.,CEITEC-Central European Institute of Technology , Masaryk University , Kamenice 5 , CZ-62500 Brno , Czechia
| | - Radek Marek
- Department of Chemistry, Faculty of Science , Masaryk University , Kamenice 5 , CZ-62500 Brno , Czechia.,CEITEC-Central European Institute of Technology , Masaryk University , Kamenice 5 , CZ-62500 Brno , Czechia
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11
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Bora PL, Novotný J, Ruud K, Komorovsky S, Marek R. Electron-Spin Structure and Metal–Ligand Bonding in Open-Shell Systems from Relativistic EPR and NMR: A Case Study of Square-Planar Iridium Catalysts. J Chem Theory Comput 2018; 15:201-214. [DOI: 10.1021/acs.jctc.8b00914] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Pankaj L. Bora
- CEITEC - Central European Institute of Technology, Masaryk University, Kamenice 5/A4, CZ-62500 Brno, Czechia
| | - Jan Novotný
- CEITEC - Central European Institute of Technology, Masaryk University, Kamenice 5/A4, CZ-62500 Brno, Czechia
| | - Kenneth Ruud
- Hylleraas Centre for Quantum Molecular Science, Department of Chemistry, UiT The Arctic University of Norway, N-9037 Tromsø, Norway
| | - Stanislav Komorovsky
- Institute of Inorganic Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, SK-84536 Bratislava, Slovakia
| | - Radek Marek
- CEITEC - Central European Institute of Technology, Masaryk University, Kamenice 5/A4, CZ-62500 Brno, Czechia
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12
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Mareš J, Vaara J. Ab initio paramagnetic NMR shifts via point-dipole approximation in a large magnetic-anisotropy Co(ii) complex. Phys Chem Chem Phys 2018; 20:22547-22555. [PMID: 30141806 DOI: 10.1039/c8cp04123g] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Transition metal complexes can possess a large magnetic susceptibility anisotropy, facilitating applications such as paramagnetic tags or shift agents in nuclear magnetic resonance (NMR) spectroscopy. Due to its g-shift and zero-field splitting (ZFS) we demonstrate on a Co(ii) clathrochelate with an aliphatic 16-carbon chain, a modern approach for ab initio calculation of paramagnetic susceptibility. Due to its large anisotropy, large linear dimension but relatively low number of atoms, the chosen complex is especially well-suited for testing the long-range point-dipole approximation (PDA) for the pseudocontact shifts (PCSs) of paramagnetic NMR. A static structure of the complex is used to compare the limiting long-distance PDA with full first-principles quantum-mechanical calculation. A non-symmetric formula for the magnetic susceptibility tensor is necessary to be consistent with the latter. Comparison with experimental shifts is performed by conformational averaging over the chain dynamics using Monte Carlo simulation. We observe satisfactory accuracy from the rudimentary simulation and, more importantly, demonstrate the fast applicability of the ab initio PDA.
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Affiliation(s)
- Jiří Mareš
- NMR Research Unit, University of Oulu, P.O. Box 3000, FI-90014 Oulu, Finland.
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13
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Sergentu DC, Gendron F, Autschbach J. Similar ligand-metal bonding for transition metals and actinides? 5f 1 U(C 7H 7) 2-versus 3d n metallocenes. Chem Sci 2018; 9:6292-6306. [PMID: 30123484 PMCID: PMC6063092 DOI: 10.1039/c7sc05373h] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2017] [Accepted: 06/10/2018] [Indexed: 11/30/2022] Open
Abstract
U(C7H7)2- is a fascinating 5f1 complex whose metal-ligand bonding was assigned in the literature as being very similar to 3d7 cobaltocene, based on a crystal-field theoretical interpretation of the experimental magnetic resonance data. The present work provides an in-depth theoretical study of the electronic structure, bonding, and magnetic properties of the 5f1 U(C7H7)2-vs. 3d metallocenes with V, Co, and Ni, performed with relativistic wavefunction and density functional methods. The ligand to metal donation bonding in U(C7H7)2- is strong and in fact similar to that in vanadocene, in the sense that the highest occupied arene orbitals donate electron density into empty metal orbitals of the same symmetry with respect to the rotational axis (3dπ for V, 5fδ for U), but selectively with α spin (↑). For Co and Ni, the dative bonding from the ligands is β spin (↓) selective into partially filled 3dπ orbitals. In all systems, this spin delocalization triggers spin polarization in the arene σ bonding framework, causing proton spin densities opposite to those of the carbons. As a consequence, the proton spin densities and hyperfine coupling constants are negative for the Co and Ni complex, but positive for vanadocene. The of U(C7H7)2- is negative and similar to that of cobaltocene, but only because of the strong spin-orbit coupling in the actinocene, which causes to be opposite to the sign of the proton spin density. The study contributes to a better understanding of actinide 5f vs. transition metal 3d covalency, and highlights potential pitfalls when interpreting experimental magnetic resonance data in terms of covalent bonding for actinide complexes.
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Affiliation(s)
- Dumitru-Claudiu Sergentu
- Department of Chemistry , University at Buffalo , State University of New York , Buffalo , NY 14260-3000 , USA .
| | - Frédéric Gendron
- Department of Chemistry , University at Buffalo , State University of New York , Buffalo , NY 14260-3000 , USA .
| | - Jochen Autschbach
- Department of Chemistry , University at Buffalo , State University of New York , Buffalo , NY 14260-3000 , USA .
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14
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Jeremias L, Novotný J, Repisky M, Komorovsky S, Marek R. Interplay of Through-Bond Hyperfine and Substituent Effects on the NMR Chemical Shifts in Ru(III) Complexes. Inorg Chem 2018; 57:8748-8759. [PMID: 30004686 DOI: 10.1021/acs.inorgchem.8b00073] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The links between the molecular structure and nuclear magnetic resonance (NMR) parameters of paramagnetic transition-metal complexes are still relatively unexplored. This applies particularly to the contact term of the hyperfine contribution to the NMR chemical shift. We report combining experimental NMR with relativistic density functional theory (DFT) to study a series of Ru(III) complexes with 2-substituted β-diketones. A series of complexes with systematically varied substituents was synthesized and analyzed using 1H and 13C NMR spectroscopy. The NMR spectra recorded at several temperatures were used to construct Curie plots and estimate the temperature-independent (orbital) and temperature-dependent (hyperfine) contributions to the NMR shift. Relativistic DFT calculations of electron paramagnetic resonance and NMR parameters were performed to interpret the experimental observations. The effects of individual factors such as basis set, density functional, exact-exchange admixture, and relativity are analyzed and discussed. Based on the calibration study in this work, the fully relativistic Dirac-Kohn-Sham (DKS) method, the GIAO approach (orbital shift), the PBE0 functional with the triple-ζ valence basis sets, and the polarizable continuum model for describing solvent effects were selected to calculate the NMR parameters. The hyperfine contribution to the total paramagnetic NMR (pNMR) chemical shift is shown to be governed by the Fermi-contact (FC) term, and the substituent effect (H vs Br) on the through-bond FC shifts is analyzed, interpreted, and discussed in terms of spin-density distribution, atomic spin populations, and molecular-orbital theory. In contrast to the closed-shell systems of Rh(III), the presence of a single unpaired electron in the open-shell Ru(III) analogs significantly alters the NMR resonances of the ligand atoms distant from the metal center in synergy with the substituent effect.
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Affiliation(s)
- Lukáš Jeremias
- CEITEC-Central European Institute of Technology , Masaryk University , Kamenice 5/A4 , CZ-625 00 Brno , Czechia
| | - Jan Novotný
- CEITEC-Central European Institute of Technology , Masaryk University , Kamenice 5/A4 , CZ-625 00 Brno , Czechia
| | - Michal Repisky
- Hylleraas Centre for Quantum Molecular Science, Department of Chemistry , UiT-The Arctic University of Norway , N-9037 Tromsø , Norway
| | - Stanislav Komorovsky
- Institute of Inorganic Chemistry , Slovak Academy of Sciences , Dúbravská cesta 9 , SK-84536 Bratislava , Slovakia
| | - Radek Marek
- CEITEC-Central European Institute of Technology , Masaryk University , Kamenice 5/A4 , CZ-625 00 Brno , Czechia
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15
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Chyba J, Novák M, Munzarová P, Novotný J, Marek R. Through-Space Paramagnetic NMR Effects in Host–Guest Complexes: Potential Ruthenium(III) Metallodrugs with Macrocyclic Carriers. Inorg Chem 2018; 57:8735-8747. [DOI: 10.1021/acs.inorgchem.7b03233] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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