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Tabe H, Seki Y, Yamane M, Nakazono T, Yamada Y. Synergistic Effect of Fe II and Mn II Ions in Cyano-Bridged Heterometallic Coordination Polymers on Catalytic Selectivity of Benzene Oxygenation to Phenol. J Phys Chem Lett 2023; 14:158-163. [PMID: 36579843 DOI: 10.1021/acs.jpclett.2c02939] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
A cyano-bridged heterometallic coordination polymer with partial deficiencies of CN- ligands, [MnII(H2O)8/3]3/2[FeII(CN)5(NH3)], forms open metal sites both on MnII and FeII ions by liberation of monodentate ligands such as NH3 and H2O. [MnII(H2O)8/3]3/2[FeII(CN)5(NH3)] exhibits high catalytic activity and selectivity of benzene oxygenation to phenol in the presence of m-chloroperoxybenzoic acid as an oxidant. The postcatalytic spectroscopy of [MnII(H2O)8/3]3/2[FeII(CN)5(NH3)] and catalysis comparison with a physical mixture of [MnII(H2O)3]2[FeII(CN)6] and [Fe(H2O)3/2]4/3[Fe(CN)6], which has open metal sites on both MnII and Fe ions separately, indicated that the high activity resulted from high oxidation ability and phenol adsorption ability of FeII and MnII ions, respectively.
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Affiliation(s)
- Hiroyasu Tabe
- Institute for Integrated Cell-Material Sciences (iCeMS), Institute for Advanced Study (IAS), Kyoto University, Yoshida-Hommachi, Sakyo-ku, Kyoto 606-8501, Japan
| | - Yusuke Seki
- Department of Chemistry and Bioengineering, Graduate School of Engineering, Osaka Metropolitan University, 3-3-138 Sugimoto, Sumiyoshi, Osaka 558-8585, Japan
| | - Mari Yamane
- Department of Chemistry and Bioengineering, Graduate School of Engineering, Osaka Metropolitan University, 3-3-138 Sugimoto, Sumiyoshi, Osaka 558-8585, Japan
| | - Takashi Nakazono
- Research Center for Artificial Photosynthesis (ReCAP), Osaka Metropolitan University, 3-3-138 Sugimoto, Sumiyoshi, Osaka 558-8585, Japan
| | - Yusuke Yamada
- Department of Chemistry and Bioengineering, Graduate School of Engineering, Osaka Metropolitan University, 3-3-138 Sugimoto, Sumiyoshi, Osaka 558-8585, Japan
- Research Center for Artificial Photosynthesis (ReCAP), Osaka Metropolitan University, 3-3-138 Sugimoto, Sumiyoshi, Osaka 558-8585, Japan
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2
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Ma X, Li M, Lei M. Trinuclear Transition Metal Complexes in Catalytic Reactions. ACTA CHIMICA SINICA 2023. [DOI: 10.6023/a22100425] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
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Álvarez M, Marín P, Ordóñez S. Upgrading of methane emissions via chemical looping over copper-zeolites: Experiments and modelling. Chem Eng Sci 2022. [DOI: 10.1016/j.ces.2022.117818] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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4
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Peng W, Qu X, Shaik S, Wang B. Deciphering the oxygen activation mechanism at the CuC site of particulate methane monooxygenase. Nat Catal 2021. [DOI: 10.1038/s41929-021-00591-4] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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Liu YF, Shen J, Chen SL, Qiao W, Zhou S, Hong K. Theoretical study of aromatic hydroxylation of the [Cu 2(H-XYL)O 2] 2+ complex mediated by a side-on peroxo dicopper core and Cu-ligand effects. Dalton Trans 2019; 48:16882-16893. [PMID: 31621734 DOI: 10.1039/c9dt02814e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this work, the aromatic hydroxylation mechanism of the [Cu2(H-XYL)O2]2+ complex mediated by a peroxo dicopper core and Cu-ligand effects are investigated by using hybrid density functional theory (DFT) and the broken symmetry B3LYP method. Based on the calculated free-energy profiles, we proposed two available mechanisms. The first reaction steps of both mechanisms involve concerted O-O bond cleavage and C-O bond formation and the second step involves the Wagner-Meerwein rearrangement of the substrate by a [1,2] H shift (HA shift from CA to CC) or (HA shift from CA to OA) across the phenyl ring to form stable dienone intermediates, and this is followed by the protonation of bridging oxygen atoms to produce the final hydroxylated dicopper(ii) product. The HA shift from CA to CC mechanism is the energetically most favorable, in which the first reaction step is the rate-limiting reaction, with a calculated free-energy barrier of 19.0 kcal mol-1 and a deuterium kinetic isotope effect of 1.0, in agreement with experimental observations. The calculation also shows that the reaction started from the P-type species of [Cu2(H-XYL)O2]2+ which is capable of mediating the direct hydroxylation of aromatic substrates without the intermediacy of an O-type species. Finally, we designed some new complexes with different Cu-ligands and found the complex that computationally possesses a higher activity in mediating the hydroxylation of the ligand based aromatic substrate; here, Cu loses a pyridyl ligand donor by dissociation, compared to the [Cu2(H-XYL)O2]2+ complex.
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Affiliation(s)
- Yan Fang Liu
- National & Local Joint Engineering Research Center for Mineral Salt Deep Utilization, Key Laboratory for Palygorskite Science and Applied Technology of Jiangsu Province, Huaiyin Institute of Technology, Huaian 223003, China. and Shandong Provincial Key Laboratory of Synthetic Biology, Laboratory of Biofuels, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266061, China
| | - Junliang Shen
- National & Local Joint Engineering Research Center for Mineral Salt Deep Utilization, Key Laboratory for Palygorskite Science and Applied Technology of Jiangsu Province, Huaiyin Institute of Technology, Huaian 223003, China.
| | - Shi-Lu Chen
- School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing 100081, China
| | - Weiye Qiao
- Chemistry and Chemical Engineering College, University of Xingtai, Xingtai, Hebei 054001, China
| | - Suqin Zhou
- National & Local Joint Engineering Research Center for Mineral Salt Deep Utilization, Key Laboratory for Palygorskite Science and Applied Technology of Jiangsu Province, Huaiyin Institute of Technology, Huaian 223003, China.
| | - Kun Hong
- National & Local Joint Engineering Research Center for Mineral Salt Deep Utilization, Key Laboratory for Palygorskite Science and Applied Technology of Jiangsu Province, Huaiyin Institute of Technology, Huaian 223003, China.
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Vogiatzis KD, Polynski MV, Kirkland JK, Townsend J, Hashemi A, Liu C, Pidko EA. Computational Approach to Molecular Catalysis by 3d Transition Metals: Challenges and Opportunities. Chem Rev 2019; 119:2453-2523. [PMID: 30376310 PMCID: PMC6396130 DOI: 10.1021/acs.chemrev.8b00361] [Citation(s) in RCA: 233] [Impact Index Per Article: 38.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2018] [Indexed: 12/28/2022]
Abstract
Computational chemistry provides a versatile toolbox for studying mechanistic details of catalytic reactions and holds promise to deliver practical strategies to enable the rational in silico catalyst design. The versatile reactivity and nontrivial electronic structure effects, common for systems based on 3d transition metals, introduce additional complexity that may represent a particular challenge to the standard computational strategies. In this review, we discuss the challenges and capabilities of modern electronic structure methods for studying the reaction mechanisms promoted by 3d transition metal molecular catalysts. Particular focus will be placed on the ways of addressing the multiconfigurational problem in electronic structure calculations and the role of expert bias in the practical utilization of the available methods. The development of density functionals designed to address transition metals is also discussed. Special emphasis is placed on the methods that account for solvation effects and the multicomponent nature of practical catalytic systems. This is followed by an overview of recent computational studies addressing the mechanistic complexity of catalytic processes by molecular catalysts based on 3d metals. Cases that involve noninnocent ligands, multicomponent reaction systems, metal-ligand and metal-metal cooperativity, as well as modeling complex catalytic systems such as metal-organic frameworks are presented. Conventionally, computational studies on catalytic mechanisms are heavily dependent on the chemical intuition and expert input of the researcher. Recent developments in advanced automated methods for reaction path analysis hold promise for eliminating such human-bias from computational catalysis studies. A brief overview of these approaches is presented in the final section of the review. The paper is closed with general concluding remarks.
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Affiliation(s)
| | | | - Justin K. Kirkland
- Department
of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Jacob Townsend
- Department
of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Ali Hashemi
- Inorganic
Systems Engineering group, Department of Chemical Engineering, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
| | - Chong Liu
- Inorganic
Systems Engineering group, Department of Chemical Engineering, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
| | - Evgeny A. Pidko
- TheoMAT
group, ITMO University, Lomonosova 9, St. Petersburg 191002, Russia
- Inorganic
Systems Engineering group, Department of Chemical Engineering, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
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7
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Jiang YY, Li G, Yang D, Zhang Z, Zhu L, Fan X, Bi S. Mechanism of Cu-Catalyzed Aerobic C(CO)–CH3 Bond Cleavage: A Combined Computational and Experimental Study. ACS Catal 2018. [DOI: 10.1021/acscatal.8b03993] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Yuan-Ye Jiang
- School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, People’s Republic of China
| | - Guoqing Li
- School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, People’s Republic of China
| | - Daoshan Yang
- School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, People’s Republic of China
- College of Chemistry and Molecular Engineering, Qingdao University of Science and Technology, Qingdao 266042, People’s Republic of China
| | - Zhaoshun Zhang
- School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, People’s Republic of China
| | - Ling Zhu
- School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, People’s Republic of China
| | - Xia Fan
- School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, People’s Republic of China
| | - Siwei Bi
- School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, People’s Republic of China
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Bie L, Liu F, Li Y, Dong T, Gao J, Du L, Yuan Q. Spin crossover dynamics studies on the thermally activated molecular oxygen binding mechanism on a model copper complex. Phys Chem Chem Phys 2018; 20:15852-15862. [DOI: 10.1039/c8cp02482k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
The theoretical description of the primary dioxygen (O2) binding and activation step in many copper or iron enzymes, suffers from the instrinsically electronic non-adiabaticity of the spin flip events of the triplet dioxygen molecule (3O2), mediated by spin–orbit couplings.
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Affiliation(s)
- Lihua Bie
- Hubei Key Laboratory of Agricultural Bioinformatics
- College of Informatics
- Huazhong Agricultural University
- Wuhan
- P. R. China
| | - Fang Liu
- Hubei Key Laboratory of Agricultural Bioinformatics
- College of Informatics
- Huazhong Agricultural University
- Wuhan
- P. R. China
| | - Yanwei Li
- Environment Research Institute
- Shandong University
- Jinan
- P. R. China
| | - Tiange Dong
- Hubei Key Laboratory of Agricultural Bioinformatics
- College of Informatics
- Huazhong Agricultural University
- Wuhan
- P. R. China
| | - Jun Gao
- Hubei Key Laboratory of Agricultural Bioinformatics
- College of Informatics
- Huazhong Agricultural University
- Wuhan
- P. R. China
| | - Likai Du
- Hubei Key Laboratory of Agricultural Bioinformatics
- College of Informatics
- Huazhong Agricultural University
- Wuhan
- P. R. China
| | - Qiaoxia Yuan
- College of Engineering
- Huazhong Agricultural University
- Wuhan 430070
- P. R. China
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