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For: Jing Y, Mu F, Xing X, Huang J, Lou M, Xu H, Ning B, Lou Y, Gao Z, Luo H, Yan X, Li H, Wang N. Knockout and Restoration Reveal Differential Functional Roles of PPARγ1 and PPARγ2 in Chicken Adipogenesis. J Agric Food Chem 2022;70:14959-14973. [PMID: 36383077 DOI: 10.1021/acs.jafc.2c05549] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]

For:	Jing Y, Mu F, Xing X, Huang J, Lou M, Xu H, Ning B, Lou Y, Gao Z, Luo H, Yan X, Li H, Wang N. Knockout and Restoration Reveal Differential Functional Roles of PPARγ1 and PPARγ2 in Chicken Adipogenesis. J Agric Food Chem 2022;70:14959-14973. [PMID: 36383077 DOI: 10.1021/acs.jafc.2c05549] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]

Number

Cited by Other Article(s)

Wang Z, Su Y, Zhao M, Ma Z, Li J, Hou Z, Li H. NOTCH1 as a Negative Regulator of Avian Adipocyte Differentiation: Implications for Fat Deposition. Animals (Basel) 2024;14:585. [PMID: 38396553 PMCID: PMC10886207 DOI: 10.3390/ani14040585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Revised: 02/02/2024] [Accepted: 02/07/2024] [Indexed: 02/25/2024] Open

Chen G, Lin Z, Peng H, Zhang S, Zhang Z, Zhang X, Nie Q, Luo W. The transmembrane protein TMEM182 promotes fat deposition and alters metabolomics and lipidomics. Int J Biol Macromol 2024;259:129144. [PMID: 38181918 DOI: 10.1016/j.ijbiomac.2023.129144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2023] [Revised: 12/10/2023] [Accepted: 12/28/2023] [Indexed: 01/07/2024]

Affiliation(s)

Genghua Chen College of Animal Science, South China Agricultural University, Guangzhou, Guangdong 510642, China; Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, Key Laboratory of Chicken Genetics, Breeding and Reproduction, Ministry of Agriculture, Guangzhou, Guangdong 510642, China; State Key Laboratory of Livestock and Poultry Breeding, Lingnan Guangdong Laboratory of Agriculture, South China Agricultural University, Guangzhou 510642, China
Zetong Lin College of Animal Science, South China Agricultural University, Guangzhou, Guangdong 510642, China; Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, Key Laboratory of Chicken Genetics, Breeding and Reproduction, Ministry of Agriculture, Guangzhou, Guangdong 510642, China; State Key Laboratory of Livestock and Poultry Breeding, Lingnan Guangdong Laboratory of Agriculture, South China Agricultural University, Guangzhou 510642, China
Haoqi Peng College of Animal Science, South China Agricultural University, Guangzhou, Guangdong 510642, China; Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, Key Laboratory of Chicken Genetics, Breeding and Reproduction, Ministry of Agriculture, Guangzhou, Guangdong 510642, China; State Key Laboratory of Livestock and Poultry Breeding, Lingnan Guangdong Laboratory of Agriculture, South China Agricultural University, Guangzhou 510642, China
Shuai Zhang College of Animal Science, South China Agricultural University, Guangzhou, Guangdong 510642, China; Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, Key Laboratory of Chicken Genetics, Breeding and Reproduction, Ministry of Agriculture, Guangzhou, Guangdong 510642, China; State Key Laboratory of Livestock and Poultry Breeding, Lingnan Guangdong Laboratory of Agriculture, South China Agricultural University, Guangzhou 510642, China
Zihao Zhang College of Animal Science, South China Agricultural University, Guangzhou, Guangdong 510642, China; Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, Key Laboratory of Chicken Genetics, Breeding and Reproduction, Ministry of Agriculture, Guangzhou, Guangdong 510642, China; State Key Laboratory of Livestock and Poultry Breeding, Lingnan Guangdong Laboratory of Agriculture, South China Agricultural University, Guangzhou 510642, China
Xiquan Zhang College of Animal Science, South China Agricultural University, Guangzhou, Guangdong 510642, China; Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, Key Laboratory of Chicken Genetics, Breeding and Reproduction, Ministry of Agriculture, Guangzhou, Guangdong 510642, China; State Key Laboratory of Livestock and Poultry Breeding, Lingnan Guangdong Laboratory of Agriculture, South China Agricultural University, Guangzhou 510642, China
Qinghua Nie College of Animal Science, South China Agricultural University, Guangzhou, Guangdong 510642, China; Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, Key Laboratory of Chicken Genetics, Breeding and Reproduction, Ministry of Agriculture, Guangzhou, Guangdong 510642, China; State Key Laboratory of Livestock and Poultry Breeding, Lingnan Guangdong Laboratory of Agriculture, South China Agricultural University, Guangzhou 510642, China
Wen Luo College of Animal Science, South China Agricultural University, Guangzhou, Guangdong 510642, China; Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, Key Laboratory of Chicken Genetics, Breeding and Reproduction, Ministry of Agriculture, Guangzhou, Guangdong 510642, China; State Key Laboratory of Livestock and Poultry Breeding, Lingnan Guangdong Laboratory of Agriculture, South China Agricultural University, Guangzhou 510642, China.

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Hu T, Li Z, Gong C, Xiong Y, Sun S, Xing J, Li Y, Li R, Wang Y, Wang Y, Lin Y. FOS Inhibits the Differentiation of Intramuscular Adipocytes in Goats. Genes (Basel) 2023;14:2088. [PMID: 38003034 PMCID: PMC10671551 DOI: 10.3390/genes14112088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 11/14/2023] [Accepted: 11/14/2023] [Indexed: 11/26/2023] Open

Affiliation(s)

Tingting Hu College of Animal Science and Veterinary, Southwest Minzu University, Chengdu 610041, China; (T.H.); (Z.L.); (C.G.); (Y.X.); (S.S.); (J.X.); (Y.L.); (Y.W.); (Y.W.) Key Laboratory of Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Utilization, Ministry of Education, Southwest Minzu University, Chengdu 610041, China Key Laboratory of Sichuan Province for Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Exploitation, Southwest Minzu University, Chengdu 610041, China
Zhibin Li College of Animal Science and Veterinary, Southwest Minzu University, Chengdu 610041, China; (T.H.); (Z.L.); (C.G.); (Y.X.); (S.S.); (J.X.); (Y.L.); (Y.W.); (Y.W.) Key Laboratory of Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Utilization, Ministry of Education, Southwest Minzu University, Chengdu 610041, China Key Laboratory of Sichuan Province for Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Exploitation, Southwest Minzu University, Chengdu 610041, China
Chengsi Gong College of Animal Science and Veterinary, Southwest Minzu University, Chengdu 610041, China; (T.H.); (Z.L.); (C.G.); (Y.X.); (S.S.); (J.X.); (Y.L.); (Y.W.); (Y.W.) Key Laboratory of Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Utilization, Ministry of Education, Southwest Minzu University, Chengdu 610041, China Key Laboratory of Sichuan Province for Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Exploitation, Southwest Minzu University, Chengdu 610041, China
Yan Xiong College of Animal Science and Veterinary, Southwest Minzu University, Chengdu 610041, China; (T.H.); (Z.L.); (C.G.); (Y.X.); (S.S.); (J.X.); (Y.L.); (Y.W.); (Y.W.) Key Laboratory of Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Utilization, Ministry of Education, Southwest Minzu University, Chengdu 610041, China Key Laboratory of Sichuan Province for Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Exploitation, Southwest Minzu University, Chengdu 610041, China
Shiyu Sun College of Animal Science and Veterinary, Southwest Minzu University, Chengdu 610041, China; (T.H.); (Z.L.); (C.G.); (Y.X.); (S.S.); (J.X.); (Y.L.); (Y.W.); (Y.W.) Key Laboratory of Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Utilization, Ministry of Education, Southwest Minzu University, Chengdu 610041, China
Jiani Xing College of Animal Science and Veterinary, Southwest Minzu University, Chengdu 610041, China; (T.H.); (Z.L.); (C.G.); (Y.X.); (S.S.); (J.X.); (Y.L.); (Y.W.); (Y.W.) Key Laboratory of Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Utilization, Ministry of Education, Southwest Minzu University, Chengdu 610041, China Key Laboratory of Sichuan Province for Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Exploitation, Southwest Minzu University, Chengdu 610041, China
Yanyan Li College of Animal Science and Veterinary, Southwest Minzu University, Chengdu 610041, China; (T.H.); (Z.L.); (C.G.); (Y.X.); (S.S.); (J.X.); (Y.L.); (Y.W.); (Y.W.) Key Laboratory of Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Utilization, Ministry of Education, Southwest Minzu University, Chengdu 610041, China Key Laboratory of Sichuan Province for Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Exploitation, Southwest Minzu University, Chengdu 610041, China
Ruiwen Li Chengdu Women’s and Children’s Central Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu 611731, China;
Youli Wang College of Animal Science and Veterinary, Southwest Minzu University, Chengdu 610041, China; (T.H.); (Z.L.); (C.G.); (Y.X.); (S.S.); (J.X.); (Y.L.); (Y.W.); (Y.W.) Key Laboratory of Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Utilization, Ministry of Education, Southwest Minzu University, Chengdu 610041, China Key Laboratory of Sichuan Province for Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Exploitation, Southwest Minzu University, Chengdu 610041, China
Yong Wang College of Animal Science and Veterinary, Southwest Minzu University, Chengdu 610041, China; (T.H.); (Z.L.); (C.G.); (Y.X.); (S.S.); (J.X.); (Y.L.); (Y.W.); (Y.W.) Key Laboratory of Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Utilization, Ministry of Education, Southwest Minzu University, Chengdu 610041, China Key Laboratory of Sichuan Province for Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Exploitation, Southwest Minzu University, Chengdu 610041, China
Yaqiu Lin College of Animal Science and Veterinary, Southwest Minzu University, Chengdu 610041, China; (T.H.); (Z.L.); (C.G.); (Y.X.); (S.S.); (J.X.); (Y.L.); (Y.W.); (Y.W.) Key Laboratory of Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Utilization, Ministry of Education, Southwest Minzu University, Chengdu 610041, China Key Laboratory of Sichuan Province for Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and Exploitation, Southwest Minzu University, Chengdu 610041, China

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Zou K, Wang F, Zhang Z, Zhou Y, Li P, Wang D, Zhu M, Jia C, Wei Z. Optimized CRISPR/Cas9 system for gene knockout in chicken DF1 cells. Poult Sci 2023;102:102970. [PMID: 37562129 PMCID: PMC10432839 DOI: 10.1016/j.psj.2023.102970] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Revised: 07/18/2023] [Accepted: 07/23/2023] [Indexed: 08/12/2023] Open

Abstract

The editing efficiency primarily hinders the utility of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) technology in poultry. For a better understanding of the factors that influence the efficiency of gene knockout mediated by CRISPR/Cas9 in chicken DF1 cells, the single or dual single guide RNA (sgRNA) targeted exon regions of genes (taking anti-Müllerian hormone, TGF-beta receptor type-2 and Peroxisome proliferator-activated receptor gamma as examples) were designed. The sgRNA-CRISPR/Cas9 vectors with corresponding reporter vectors were transfected into DF1 cells. T7 endonuclease 1 (T7E1) and amplicon sequencing assay were compared for evaluating genome editing efficiency and the indel profiles were analyzed based on the data of amplicon sequencing. Meanwhile, to evaluate the precision of Cas9 cleavage, we also analyzed the homology of small insertion with the nucleotides of upstream and downstream of cleave sties. The surrogate reporter systems showed strong enrichment function, and the indel percentages were increased after puromycin selection. The indel ratios of T7E1 assay were lower than amplicon sequencing assay, which indicated T7E1 isn't fit to be used as the sole evaluation criterion for the targeting efficiency of CRISPR/Cas9. Based on the amplicon sequencing analysis, the editing efficiency showed noticeable differences among cells treated with different sgRNAs. However, the variety of indel efficiencies was not related to the GC content of sgRNA or chromosome types of targeted genes. The results showed that the dual sgRNA might not raise the indel ratios compared with individual sgRNA, but they could increase the ratios of the fragment deletions. The present study suggested that the surrogate reporter was an effective method to promote the editing efficiencies of CRISPR/Cas9 in chicken cells. The dual sgRNA could increase the fragment deletions, and the sensitivity of amplicon sequencing to detect cleavage was higher than the T7 endonuclease 1 assay. These results are essential to improve the application of CRISPR/Cas9 technology in chicken cells.

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