Personalized Medicine for Crops? Opportunities for the Application of Molecular Recognition in Agriculture

A mechanistic model for determining factors that influence inorganic nitrogen fate in corn cultivation

Conventional practices for inorganic nitrogen fertilizer are highly inefficient leading to excess nitrogen in the environment. Excess environmental nitrogen induces ecological (e.g., hypoxia, eutrophication) and public health (e.g., nitrate contaminated drinking water) consequences, motivating adoption of management strategies to improve fertilizer use efficiency. Yet, how to limit the environmental impacts from inorganic nitrogen fertilizer while maintaining crop yields is a persistent challenge. The lack of empirical data on the fate and transport of nitrogen in an agriculture soil-crop system and how transport changes under varying conditions limits our ability to address this challenge. To this end, we developed a mechanistic model to assess how various parameters within a soil-crop system affect where nitrogen goes and inform how we can perturb the system to improve crop nitrogen content while reducing nitrogen emissions to the environment. The model evaluates nitrogen transport and distribution in the soil-corn plant system on a conventional Iowa corn farm. Simulations determine the amount of applied nitrogen fertilizer acquired by the crop root system, leached to groundwater, lost to tile drainage, and denitrified. Through scenario modeling, it was found that reducing application rates from 200 kg ha-1 to 160 kg ha-1 had limited impact on plant nitrogen content, while decreasing wasted nitrogen fertilizer by 25%. Delayed application until June significantly increased the f-NUE and denitrification while reducing the amount of fertilizer leached and exported through tile drainage. The value in a model like the one presented herein, is the ability to perturb the system through manipulation of variables representative of a specific scenario of interest to inform how one can improve crop-based nitrogen management.

Nucleic Acid Aptamers for Pesticides, Toxins, and Biomarkers in Agriculture

Nucleic acid aptamers are short single-stranded DNA/RNA (ssDNA/RNA) oligonucleotides that can selectively bind to the targets. They are widely used in medicine, biosensing, and diagnostic assay. They have also been identified and extensively used for various targets in agriculture. In this review we summarize the progress of nucleic acid aptamers on pesticides (herbicides, insecticides, and fungicides), toxins, specific biomarkers of crops, and plant growth regulators in agricultural field in recent years. The basic process of aptamer selection, the already identified DNA/RNA aptamers and the aptasensors are discussed. We also discuss the future perspectives and the challenges for aptamer development in agriculture.

Selection of DNA Aptamers for Root Exudate l-Serine Using Multiple Selection Strategies

Agricultural biosensing can aid decisions about crop health and maintenance, because crops release root exudates that can inform about their status. l-Serine has been found to be indicative of nitrogen uptake in wheat and canola. The development of a biosensor for l-serine could allow farmers to monitor crop nutrient demands more precisely. The development of robust l-serine-binding DNA aptamers is described. Because small molecules can be challenging targets for Systematic Evolution of Ligands by EXponential enrichment (SELEX), three separate DNA libraries were used for SELEX experiments. A l-homocysteine aptamer was randomized to create a starting library for a l-serine selection (randomized SELEX). The final selection rounds of the l-homocysteine selection were also used as a starting library for l-serine (redirected SELEX). Finally, an original DNA library was used (original SELEX). All three SELEX experiments produced l-serine-binding aptamers with micromolar affinity, with Red.1 aptamer having a K_d of 7.9 ± 3.6 μM. Truncation improved the binding affinity to 5.2 ± 2.7 μM, and from this sequence, a Spiegelmer with improved nuclease resistance was created with a K_d of 2.0 ± 0.8 μM. This l-serine-binding Spiegelmer has the affinity and stability to be incorporated into aptamer-based biosensors for agricultural applications.

Nano-enabled strategies to enhance crop nutrition and protection

Various nano-enabled strategies are proposed to improve crop production and meet the growing global demands for food, feed and fuel while practising sustainable agriculture. After providing a brief overview of the challenges faced in the sector of crop nutrition and protection, this Review presents the possible applications of nanotechnology in this area. We also consider performance data from patents and unpublished sources so as to define the scope of what can be realistically achieved. In addition to being an industry with a narrow profit margin, agricultural businesses have inherent constraints that must be carefully considered and that include existing (or future) regulations, as well as public perception and acceptance. Directions are also identified to guide future research and establish objectives that promote the responsible and sustainable development of nanotechnology in the agri-business sector.

Opportunities and challenges for nanotechnology in the agri-tech revolution

Current agricultural practices, developed during the green revolution, are becoming unsustainable, especially in the face of climate change and growing populations. Nanotechnology will be an important driver for the impending agri-tech revolution that promises a more sustainable, efficient and resilient agricultural system, while promoting food security. Here, we present the most promising new opportunities and approaches for the application of nanotechnology to improve the use efficiency of necessary inputs (light, water, soil) for crop agriculture, and for better managing biotic and abiotic stress. Potential development and implementation barriers are discussed, emphasizing the need for a systems approach to designing proposed nanotechnologies.