1
|
Ghini V, Meoni G, Vignoli A, Di Cesare F, Tenori L, Turano P, Luchinat C. Fingerprinting and profiling in metabolomics of biosamples. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2023; 138-139:105-135. [PMID: 38065666 DOI: 10.1016/j.pnmrs.2023.10.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 10/13/2023] [Accepted: 10/15/2023] [Indexed: 12/18/2023]
Abstract
This review focuses on metabolomics from an NMR point of view. It attempts to cover the broad scope of metabolomics and describes the NMR experiments that are most suitable for each sample type. It is addressed not only to NMR specialists, but to all researchers who wish to approach metabolomics with a clear idea of what they wish to achieve but not necessarily with a deep knowledge of NMR. For this reason, some technical parts may seem a bit naïve to the experts. The review starts by describing standard metabolomics procedures, which imply the use of a dedicated 600 MHz instrument and of four properly standardized 1D experiments. Standardization is a must if one wants to directly compare NMR results obtained in different labs. A brief mention is also made of standardized pre-analytical procedures, which are even more essential. Attention is paid to the distinction between fingerprinting and profiling, and the advantages and disadvantages of fingerprinting are clarified. This aspect is often not fully appreciated. Then profiling, and the associated problems of signal assignment and quantitation, are discussed. We also describe less conventional approaches, such as the use of different magnetic fields, the use of signal enhancement techniques to increase sensitivity, and the potential of field-shuttling NMR. A few examples of biomedical applications are also given, again with the focus on NMR techniques that are most suitable to achieve each particular goal, including a description of the most common heteronuclear experiments. Finally, the growing applications of metabolomics to foodstuffs are described.
Collapse
Affiliation(s)
- Veronica Ghini
- Magnetic Resonance Center (CERM), University of Florence, Sesto Fiorentino, Italy; Department of Chemistry "Ugo Schiff", University of Florence, Sesto Fiorentino, Italy
| | - Gaia Meoni
- Magnetic Resonance Center (CERM), University of Florence, Sesto Fiorentino, Italy; Department of Chemistry "Ugo Schiff", University of Florence, Sesto Fiorentino, Italy
| | - Alessia Vignoli
- Magnetic Resonance Center (CERM), University of Florence, Sesto Fiorentino, Italy; Department of Chemistry "Ugo Schiff", University of Florence, Sesto Fiorentino, Italy
| | - Francesca Di Cesare
- Magnetic Resonance Center (CERM), University of Florence, Sesto Fiorentino, Italy; Department of Chemistry "Ugo Schiff", University of Florence, Sesto Fiorentino, Italy
| | - Leonardo Tenori
- Magnetic Resonance Center (CERM), University of Florence, Sesto Fiorentino, Italy; Department of Chemistry "Ugo Schiff", University of Florence, Sesto Fiorentino, Italy; Consorzio Interuniversitario Risonanze Magnetiche Metallo Proteine (CIRMMP), Sesto Fiorentino, Italy
| | - Paola Turano
- Magnetic Resonance Center (CERM), University of Florence, Sesto Fiorentino, Italy; Department of Chemistry "Ugo Schiff", University of Florence, Sesto Fiorentino, Italy; Consorzio Interuniversitario Risonanze Magnetiche Metallo Proteine (CIRMMP), Sesto Fiorentino, Italy.
| | - Claudio Luchinat
- Consorzio Interuniversitario Risonanze Magnetiche Metallo Proteine (CIRMMP), Sesto Fiorentino, Italy; Giotto Biotech S.r.l., Sesto Fiorentino, Italy.
| |
Collapse
|
2
|
Strecker C, Ara V. Detecting Admixture to Mango Purée of the Alphonso Cultivar (Mangifera indica L. cv. Alphonso) by 1H-NMR Spectroscopy. FOOD ANAL METHOD 2021. [DOI: 10.1007/s12161-021-02116-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
AbstractFood authenticity is becoming increasingly important but challenges existing analytical methods. In this study, we analyze the mango cultivar Alphonso with regard to authenticity using 1H-NMR spectroscopy. This cultivar has been termed “the king of mangoes” due to its unique flavor. Regarding its metabolites however, little is known about unique constellations that allow for differentiation of the Alphonso cultivar. We find that the Alphonso cultivar is distinguished by high levels of niacin, trigonelline, and histidine but features relatively low levels of alanine. Furthermore, we develop a model based on the local outlier factor algorithm that effectively detects admixture of non-Alphonso cultivars to Alphonso purée. This task is highly challenging because we identified no metabolites that are unique or uniquely absent in the Alphonso cultivar compared to other mango cultivars analyzed in this study. Our model shows promising results on a test set: Admixtures consisting of 35% non-Alphonso and 65% Alphonso mango purée were uncovered with a sensitivity of 88%. At the same time, our model verified Alphonso samples with a good specificity of 86%.
Collapse
|
3
|
Kamal T, Cheng S, Khan IA, Nawab K, Zhang T, Song Y, Wang S, Nadeem M, Riaz M, Khan MAU, Zhu B, Tan M. Potential uses of LF‐NMR and MRI in the study of water dynamics and quality measurement of fruits and vegetables. J FOOD PROCESS PRES 2019. [DOI: 10.1111/jfpp.14202] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Tariq Kamal
- National Engineering Research Center of Seafood, School of Food Science and Technology Dalian Polytechnic University Dalian People's Republic of China
- Engineering Research Center of Seafood of Ministry of Education of China Dalian People's Republic of China
- Department of Agriculture University of Swabi Swabi Pakistan
| | - Shasha Cheng
- National Engineering Research Center of Seafood, School of Food Science and Technology Dalian Polytechnic University Dalian People's Republic of China
- Engineering Research Center of Seafood of Ministry of Education of China Dalian People's Republic of China
| | - Imtiaz Ali Khan
- Department of Agriculture University of Swabi Swabi Pakistan
| | - Khalid Nawab
- Department of Agricultural Extension Education and Communication The University of Agriculture Peshawar Peshawar Pakistan
| | - Tan Zhang
- National Engineering Research Center of Seafood, School of Food Science and Technology Dalian Polytechnic University Dalian People's Republic of China
- Engineering Research Center of Seafood of Ministry of Education of China Dalian People's Republic of China
| | - Yukun Song
- National Engineering Research Center of Seafood, School of Food Science and Technology Dalian Polytechnic University Dalian People's Republic of China
- Engineering Research Center of Seafood of Ministry of Education of China Dalian People's Republic of China
| | - Siqi Wang
- National Engineering Research Center of Seafood, School of Food Science and Technology Dalian Polytechnic University Dalian People's Republic of China
- Engineering Research Center of Seafood of Ministry of Education of China Dalian People's Republic of China
| | - Muhammad Nadeem
- Department of Plant Protection The University of Agriculture Peshawar Peshawar Pakistan
| | - Muhammad Riaz
- Department of Plant Breeding and Genetics The University of Agriculture Peshawar Peshawar Pakistan
| | | | - Bei‐Wei Zhu
- National Engineering Research Center of Seafood, School of Food Science and Technology Dalian Polytechnic University Dalian People's Republic of China
- Engineering Research Center of Seafood of Ministry of Education of China Dalian People's Republic of China
| | - Mingqian Tan
- National Engineering Research Center of Seafood, School of Food Science and Technology Dalian Polytechnic University Dalian People's Republic of China
- Engineering Research Center of Seafood of Ministry of Education of China Dalian People's Republic of China
| |
Collapse
|
4
|
Hatzakis E. Nuclear Magnetic Resonance (NMR) Spectroscopy in Food Science: A Comprehensive Review. Compr Rev Food Sci Food Saf 2018; 18:189-220. [PMID: 33337022 DOI: 10.1111/1541-4337.12408] [Citation(s) in RCA: 135] [Impact Index Per Article: 22.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Revised: 09/28/2018] [Accepted: 10/18/2018] [Indexed: 12/15/2022]
Abstract
Nuclear magnetic resonance (NMR) spectroscopy is a robust method, which can rapidly analyze mixtures at the molecular level without requiring separation and/or purification steps, making it ideal for applications in food science. Despite its increasing popularity among food scientists, NMR is still an underutilized methodology in this area, mainly due to its high cost, relatively low sensitivity, and the lack of NMR expertise by many food scientists. The aim of this review is to help bridge the knowledge gap that may exist when attempting to apply NMR methodologies to the field of food science. We begin by covering the basic principles required to apply NMR to the study of foods and nutrients. A description of the discipline of chemometrics is provided, as the combination of NMR with multivariate statistical analysis is a powerful approach for addressing modern challenges in food science. Furthermore, a comprehensive overview of recent and key applications in the areas of compositional analysis, food authentication, quality control, and human nutrition is provided. In addition to standard NMR techniques, more sophisticated NMR applications are also presented, although limitations, gaps, and potentials are discussed. We hope this review will help scientists gain some of the knowledge required to apply the powerful methodology of NMR to the rich and diverse field of food science.
Collapse
Affiliation(s)
- Emmanuel Hatzakis
- Dept. of Food Science and Technology, The Ohio State Univ., Parker Building, 2015 Fyffe Rd., Columbus, OH, U.S.A.,Foods for Health Discovery Theme, The Ohio State Univ., Parker Building, 2015 Fyffe Rd., Columbus, OH, U.S.A
| |
Collapse
|