Silencing TT8 and HB12 Decreased Protein Degradation and Digestion, Microbial Synthesis, and Metabolic Protein in Relation to Molecular Structures of Alfalfa (Medicago sativa)

Comparative Transcriptome and Anatomic Characteristics of Stems in Two Alfalfa Genotypes

Stems are more important to forage quality than leaves in alfalfa. To understand lignin formation at different stages in alfalfa, lignin distribution, anatomical characteristics and transcriptome profile were employed using two alfalfa cultivars. The results showed that the in vitro true digestibility (IVTD) of stems in WL168 was significantly higher than that of Zhungeer, along with the significantly lower neutral detergent fiber (NDF), acid detergent fiber (ADF) and lignin contents. In addition, Zhungeer exhibited increased staining of the xylem areas in the stems of different developmental stages compared to WL168. Interestingly, the stems of WL168 appeared intracellular space from the stage 3, while Zhungeer did not. The comparative transcriptome analysis showed that a total of 1993 genes were differentially expressed in the stem between the cultivars, with a higher number of expressed genes in the stage 4. Of the differentially expressed genes, starch and sucrose metabolism as well as phenylpropanoid biosynthesis pathways were the most significantly enriched pathways. Furthermore, expression of genes involved in lignin biosynthesis such as PAL, 4CL, HCT, CAD, COMT and POD coincides with the anatomic characteristics and lignin accumulation. These results may help elucidate the regulatory mechanisms of lignin biosynthesis and improve forage quality in alfalfa.

Using Mid-IR spectroscopy (ATR-FTIR) as a fast analytical tool to reveal association between protein spectral profiles and metabolizable protein supply, protein rumen degradation characteristics and estimated intestinal protein digestion before and after rumen incubation of faba bean partitions and faba bean silage

To our knowledge, there is little research done in using vibrational MID-IR molecular spectroscopy- attenuated total reflectance - Fourier transform infrared spectroscopy (ATR-FTIR) for ruminant system study. The objective of this study was to use ATR-FTIR as a fast analytical tool to reveal association between protein molecular structure in faba and metabolizable protein supply and nutrient delivery, and to explore the relationship between protein molecular structure in original and ruminal degraded residue and in situ rumen protein degradation and protein metabolism characteristics of faba bean samples (whole crop, stem, leaf, whole pods, and faba silage). The experiment for ruminant nutrition research was RCBD. Fourier transform Infrared (FTIR) spectra of faba samples before and after 12 and 24 h rumen incubations were collected with JASCO FT/IR-4200 with ATR at mid-IR range (ca. 4000-700 cm^-1) with 128 scans and at 4 cm^-1 resolution. The univariate molecular spectral analysis was carried using OMNIC software. Protein related spectral parameters before and after rumen degradation included amide region (ca. 1730-1480 cm^-1), amide I region (ca. 1713-1558 cm^-1) and amide II region (ca. 1558-1485 cm^-1). Within amide I region, α-helix (ca. 1644 cm^-1) and β-sheet (ca. 1630 cm^-1) were studied. The results showed that ATR-FTIR protein molecular spectral features were significantly different before and after rumen incubation. Protein availability and digestion characteristic are mainly determined by original ATR-FTIR spectral profiles. Total truly digestible protein value (DVE) of faba partitions could be predicted with this equation: DVE (g/kg DM) = 1207.7 HAII12 + 228.7 alpha_beta24 - 310.8 (with R-square = 0.94, RSD = 8.06, model P < 0.001). The study shows that vibrational MID-IR molecular spectroscopy (ATR-FTIR) show a high potential to be a fast analytical tool to predict nutrient delivery.