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For: Wang X, Zhang D, Huang SY. New Knowledge-Based Scoring Function with Inclusion of Backbone Conformational Entropies from Protein Structures. J Chem Inf Model 2018;58:724-732. [DOI: 10.1021/acs.jcim.7b00601] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Number Cited by Other Article(s)
1
rsRNASP: A residue-separation-based statistical potential for RNA 3D structure evaluation. Biophys J 2022;121:142-156. [PMID: 34798137 PMCID: PMC8758408 DOI: 10.1016/j.bpj.2021.11.016] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2021] [Revised: 10/23/2021] [Accepted: 11/10/2021] [Indexed: 01/07/2023]  Open
2
Chakravorty A, Higham J, Henchman RH. Entropy of Proteins Using Multiscale Cell Correlation. J Chem Inf Model 2020;60:5540-5551. [PMID: 32955869 DOI: 10.1021/acs.jcim.0c00611] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
3
Xu G, Wang Q, Ma J. OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling. J Chem Theory Comput 2020;16:3970-3976. [DOI: 10.1021/acs.jctc.0c00186] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
4
Long S, Tian P. A simple neural network implementation of generalized solvation free energy for assessment of protein structural models. RSC Adv 2019;9:36227-36233. [PMID: 35540566 PMCID: PMC9074945 DOI: 10.1039/c9ra05168f] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2019] [Accepted: 10/14/2019] [Indexed: 11/21/2022]  Open
5
Yu Z, Yao Y, Deng H, Yi M. ANDIS: an atomic angle- and distance-dependent statistical potential for protein structure quality assessment. BMC Bioinformatics 2019;20:299. [PMID: 31159742 PMCID: PMC6547486 DOI: 10.1186/s12859-019-2898-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2018] [Accepted: 05/13/2019] [Indexed: 01/05/2023]  Open
6
Wang X, Huang SY. Integrating Bonded and Nonbonded Potentials in the Knowledge-Based Scoring Function for Protein Structure Prediction. J Chem Inf Model 2019;59:3080-3090. [DOI: 10.1021/acs.jcim.9b00057] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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