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For: Rahnamoun A, Kaymak MC, Manathunga M, Götz AW, van Duin ACT, Merz KM, Aktulga HM. ReaxFF/AMBER-A Framework for Hybrid Reactive/Nonreactive Force Field Molecular Dynamics Simulations. J Chem Theory Comput 2020;16:7645-7654. [PMID: 33141581 DOI: 10.1021/acs.jctc.0c00874] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Number Cited by Other Article(s)
1
Foroutan M, Sababkar M, Bavani BM. Exploring hydrophobicity or hydrophilicity of borophene surface via reactive molecular dynamics simulation. Sci Rep 2024;14:21436. [PMID: 39271687 DOI: 10.1038/s41598-024-71793-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Accepted: 08/30/2024] [Indexed: 09/15/2024]  Open
2
Akbarzadeh R, Předota M. ReaxFF molecular dynamics of graphene oxide/NaCl aqueous solution interfaces. Phys Chem Chem Phys 2024;26:2603-2612. [PMID: 38170896 DOI: 10.1039/d3cp04735k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2024]
3
Xu X, Liu A, Liu S, Ma Y, Zhang X, Zhang M, Zhao J, Sun S, Sun X. Application of molecular dynamics simulation in self-assembled cancer nanomedicine. Biomater Res 2023;27:39. [PMID: 37143168 PMCID: PMC10161522 DOI: 10.1186/s40824-023-00386-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Accepted: 04/21/2023] [Indexed: 05/06/2023]  Open
4
Hong F, Wang M, Dong B, Diao X, Zhang X, Pang K, Zhang Y, Hou D. Molecular Insight into the Pozzolanic Reaction of Metakaolin and Calcium Hydroxide. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023;39:3601-3609. [PMID: 36848440 DOI: 10.1021/acs.langmuir.2c03115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
5
Tvaroška I, Kozmon S, Kóňa J. Molecular Modeling Insights into the Structure and Behavior of Integrins: A Review. Cells 2023;12:cells12020324. [PMID: 36672259 PMCID: PMC9856412 DOI: 10.3390/cells12020324] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Revised: 01/09/2023] [Accepted: 01/11/2023] [Indexed: 01/18/2023]  Open
6
Liu X, Liang L, Wu B, Zhang X, Zeng X, Deng Y, Peng B, Zhang X, Zheng L. Effect of the R126C mutation on the structure and function of the glucose transporter GLUT1: A molecular dynamics simulation study. J Mol Graph Model 2022;116:108227. [PMID: 35671570 DOI: 10.1016/j.jmgm.2022.108227] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Revised: 05/16/2022] [Accepted: 05/17/2022] [Indexed: 12/14/2022]
7
Liquefaction of water on the hydrophobic surface of black phosphorene: A reactive molecular dynamics simulation. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.119947] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
8
Rahnamoun A, O'Hearn KA, Kaymak MC, Li Z, Merz KM, Aktulga HM. A Polarizable Cationic Dummy Metal Ion Model. J Phys Chem Lett 2022;13:5334-5340. [PMID: 35675715 DOI: 10.1021/acs.jpclett.2c01279] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
9
Chen S, He Y, Geng Y, Wang Z, Han L, Han W. Molecular Dynamic Simulations of Bromodomain and Extra-Terminal Protein 4 Bonded to Potent Inhibitors. Molecules 2021;27:molecules27010118. [PMID: 35011350 PMCID: PMC8747027 DOI: 10.3390/molecules27010118] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2021] [Revised: 12/22/2021] [Accepted: 12/22/2021] [Indexed: 11/16/2022]  Open
10
Leven I, Hao H, Tan S, Guan X, Penrod KA, Akbarian D, Evangelisti B, Hossain MJ, Islam MM, Koski JP, Moore S, Aktulga HM, van Duin ACT, Head-Gordon T. Recent Advances for Improving the Accuracy, Transferability, and Efficiency of Reactive Force Fields. J Chem Theory Comput 2021;17:3237-3251. [PMID: 33970642 DOI: 10.1021/acs.jctc.1c00118] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
11
Zhang X, Ponce V, Galvez-Aranda DE, Zhou G, Zhou H, Seminario JM. CS2 Removal from C5 Distillates by Reactive Molecular Dynamics Simulations. Ind Eng Chem Res 2021. [DOI: 10.1021/acs.iecr.1c00530] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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