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For: Udvarhelyi A, Olivucci M, Domratcheva T. Role of the Molecular Environment in Flavoprotein Color and Redox Tuning: QM Cluster versus QM/MM Modeling. J Chem Theory Comput 2016;11:3878-94. [PMID: 26574469 DOI: 10.1021/acs.jctc.5b00197] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Number Cited by Other Article(s)
1
Hontani Y, Mehlhorn J, Domratcheva T, Beck S, Kloz M, Hegemann P, Mathes T, Kennis JTM. Spectroscopic and Computational Observation of Glutamine Tautomerization in the Blue Light Sensing Using Flavin Domain Photoreaction. J Am Chem Soc 2023;145:1040-1052. [PMID: 36607126 PMCID: PMC9853863 DOI: 10.1021/jacs.2c10621] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
2
Understanding flavin electronic structure and spectra. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2022. [DOI: 10.1002/wcms.1541] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
3
Kar RK, Chasen S, Mroginski MA, Miller AF. Tuning the Quantum Chemical Properties of Flavins via Modification at C8. J Phys Chem B 2021;125:12654-12669. [PMID: 34784473 DOI: 10.1021/acs.jpcb.1c07306] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
4
Giacomozzi L, Kjær C, Brøndsted Nielsen S, Ashworth EK, Bull JN, Stockett MH. Non-statistical fragmentation in photo-activated flavin mononucleotide anions. J Chem Phys 2021;155:044305. [PMID: 34340366 DOI: 10.1063/5.0056415] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
5
Sorigué D, Hadjidemetriou K, Blangy S, Gotthard G, Bonvalet A, Coquelle N, Samire P, Aleksandrov A, Antonucci L, Benachir A, Boutet S, Byrdin M, Cammarata M, Carbajo S, Cuiné S, Doak RB, Foucar L, Gorel A, Grünbein M, Hartmann E, Hienerwadel R, Hilpert M, Kloos M, Lane TJ, Légeret B, Legrand P, Li-Beisson Y, Moulin SLY, Nurizzo D, Peltier G, Schirò G, Shoeman RL, Sliwa M, Solinas X, Zhuang B, Barends TRM, Colletier JP, Joffre M, Royant A, Berthomieu C, Weik M, Domratcheva T, Brettel K, Vos MH, Schlichting I, Arnoux P, Müller P, Beisson F. Mechanism and dynamics of fatty acid photodecarboxylase. Science 2021;372:372/6538/eabd5687. [PMID: 33833098 DOI: 10.1126/science.abd5687] [Citation(s) in RCA: 80] [Impact Index Per Article: 26.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Accepted: 02/17/2021] [Indexed: 12/21/2022]
6
Zhang K, Ren S, Caricato M. Multistate QM/QM Extrapolation of UV/Vis Absorption Spectra with Point Charge Embedding. J Chem Theory Comput 2020;16:4361-4372. [DOI: 10.1021/acs.jctc.0c00339] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
7
Brisker-Klaiman D, Dreuw A. On the influence of dimerisation of lumiflavin in aqueous solution on its optical spectra – a quantum chemical study. Mol Phys 2019. [DOI: 10.1080/00268976.2019.1616843] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
8
Pieri E, Ledentu V, Sahlin M, Dehez F, Olivucci M, Ferré N. CpHMD-Then-QM/MM Identification of the Amino Acids Responsible for the Anabaena Sensory Rhodopsin pH-Dependent Electronic Absorption Spectrum. J Chem Theory Comput 2019;15:4535-4546. [PMID: 31264415 DOI: 10.1021/acs.jctc.9b00221] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
9
Kabir MP, Orozco-Gonzalez Y, Gozem S. Electronic spectra of flavin in different redox and protonation states: a computational perspective on the effect of the electrostatic environment. Phys Chem Chem Phys 2019;21:16526-16537. [DOI: 10.1039/c9cp02230a] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
10
Sayfutyarova ER, Goings JJ, Hammes-Schiffer S. Electron-Coupled Double Proton Transfer in the Slr1694 BLUF Photoreceptor: A Multireference Electronic Structure Study. J Phys Chem B 2018;123:439-447. [DOI: 10.1021/acs.jpcb.8b10973] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
11
Meteleshko YI, Nemukhin AV, Khrenova MG. Novel flavin-based fluorescent proteins with red-shifted emission bands: a computational study. Photochem Photobiol Sci 2018;18:177-189. [PMID: 30403258 DOI: 10.1039/c8pp00361k] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
12
Kar RK, Borin VA, Ding Y, Matysik J, Schapiro I. Spectroscopic Properties of Lumiflavin: A Quantum Chemical Study. Photochem Photobiol 2018;95:662-674. [DOI: 10.1111/php.13023] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2018] [Accepted: 09/05/2018] [Indexed: 12/24/2022]
13
Goings JJ, Reinhardt CR, Hammes-Schiffer S. Propensity for Proton Relay and Electrostatic Impact of Protein Reorganization in Slr1694 BLUF Photoreceptor. J Am Chem Soc 2018;140:15241-15251. [DOI: 10.1021/jacs.8b07456] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
14
Bull JN, Carrascosa E, Giacomozzi L, Bieske EJ, Stockett MH. Ion mobility action spectroscopy of flavin dianions reveals deprotomer-dependent photochemistry. Phys Chem Chem Phys 2018;20:19672-19681. [PMID: 30014081 PMCID: PMC6063075 DOI: 10.1039/c8cp03244k] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
15
Giacomozzi L, Kjær C, Langeland Knudsen J, Andersen LH, Brøndsted Nielsen S, Stockett MH. Absorption and luminescence spectroscopy of mass-selected flavin adenine dinucleotide mono-anions. J Chem Phys 2018;148:214309. [PMID: 29884035 DOI: 10.1063/1.5024028] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]  Open
16
Loco D, Buda F, Lugtenburg J, Mennucci B. The Dynamic Origin of Color Tuning in Proteins Revealed by a Carotenoid Pigment. J Phys Chem Lett 2018;9:2404-2410. [PMID: 29683674 DOI: 10.1021/acs.jpclett.8b00763] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
17
Khrenova MG, Meteleshko YI, Nemukhin AV. Mutants of the Flavoprotein iLOV as Prospective Red-Shifted Fluorescent Markers. J Phys Chem B 2017;121:10018-10025. [DOI: 10.1021/acs.jpcb.7b07533] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
18
Role of active site conformational changes in photocycle activation of the AppA BLUF photoreceptor. Proc Natl Acad Sci U S A 2017;114:1480-1485. [PMID: 28137837 DOI: 10.1073/pnas.1621393114] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
19
Biancardi A, Barnes J, Caricato M. Point charge embedding for ONIOM excited states calculations. J Chem Phys 2017;145:224109. [PMID: 27984901 DOI: 10.1063/1.4972000] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
20
Domratcheva T, Hartmann E, Schlichting I, Kottke T. Evidence for Tautomerisation of Glutamine in BLUF Blue Light Receptors by Vibrational Spectroscopy and Computational Chemistry. Sci Rep 2016;6:22669. [PMID: 26947391 PMCID: PMC4780082 DOI: 10.1038/srep22669] [Citation(s) in RCA: 56] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2015] [Accepted: 02/16/2016] [Indexed: 02/02/2023]  Open
21
Granovsky AA. Communication: An efficient approach to compute state-specific nuclear gradients for a generic state-averaged multi-configuration self consistent field wavefunction. J Chem Phys 2015;143:231101. [DOI: 10.1063/1.4938169] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
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