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Chen B. Extension of the Aggregation-Volume-Bias Monte Carlo Method to the Calculation of Phase Properties of Solid Systems: A Lattice-Based Cluster Approach. J Phys Chem A 2022; 126:5517-5524. [PMID: 35939050 PMCID: PMC9393858 DOI: 10.1021/acs.jpca.2c04333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
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The aggregation-volume-bias Monte Carlo method, which
has been
successful in the calculation of the formation free energies of liquid
clusters, is extended to solid systems. This extension is motivated
by early studies where disordered clusters are observed when the original
method is applied at a temperature even far below the triple point.
In order to avoid the formation of disordered aggregates, the insertion
of particles is targeted directly toward those crystal lattice sites.
Specifically, the insertion volume used to be defined as a spherical
volume centered around a given target molecule is now restricted to
be around each of the crystal lattice sites near a given target molecule.
The free energies obtained for both liquid and solid clusters are
then used to extrapolate bulk-phase information such as the chemical
potential of the liquid and solid phases at coexistence. Using the
temperature and pressure dependencies of the chemical potential information
obtained for both liquid and solid phases, the location of the triple
point can be determined. For Lennard-Jonesium, the results were found
to be in good agreement with previous simulation studies using other
approaches.
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Affiliation(s)
- Bin Chen
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803-1804, United States
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2
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Xu S, Wu L, Li Z. Nucleation of Water Clusters in Gas Phase: A Computational Study Based on Neural Network Potential and Enhanced Sampling ※. ACTA CHIMICA SINICA 2022. [DOI: 10.6023/a22010003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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3
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McKenzie ME, Deng B, Van Hoesen DC, Xia X, Baker DE, Rezikyan A, Youngman RE, Kelton KF. Nucleation pathways in barium silicate glasses. Sci Rep 2021; 11:69. [PMID: 33420156 PMCID: PMC7794403 DOI: 10.1038/s41598-020-79749-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Accepted: 11/23/2020] [Indexed: 11/16/2022] Open
Abstract
Nucleation is generally viewed as a structural fluctuation that passes a critical size to eventually become a stable emerging new phase. However, this concept leaves out many details, such as changes in cluster composition and competing pathways to the new phase. In this work, both experimental and computer modeling studies are used to understand the cluster composition and pathways. Monte Carlo and molecular dynamics approaches are used to analyze the thermodynamic and kinetic contributions to the nucleation landscape in barium silicate glasses. Experimental techniques examine the resulting polycrystals that form. Both the modeling and experimental data indicate that a silica rich core plays a dominant role in the nucleation process.
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Affiliation(s)
- Matthew E McKenzie
- Science and Technology Division, Corning Research and Development Corporation, Corning, NY, 14831, USA.
| | - Binghui Deng
- Science and Technology Division, Corning Research and Development Corporation, Corning, NY, 14831, USA
| | - D C Van Hoesen
- Department of Physics, Washington University, St. Louis, MO, 63130, USA
| | - Xinsheng Xia
- Institute of Materials Science and Engineering, Washington University, St. Louis, MO, 63130, USA
| | - David E Baker
- Science and Technology Division, Corning Research and Development Corporation, Corning, NY, 14831, USA
| | - Aram Rezikyan
- Science and Technology Division, Corning Research and Development Corporation, Corning, NY, 14831, USA
| | - Randall E Youngman
- Science and Technology Division, Corning Research and Development Corporation, Corning, NY, 14831, USA
| | - K F Kelton
- Department of Physics, Washington University, St. Louis, MO, 63130, USA.,Institute of Materials Science and Engineering, Washington University, St. Louis, MO, 63130, USA
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4
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Loeffler TD, Chan H, Narayanan B, Cherukara MJ, Gray S, Sankaranarayanan SKRS. Configurational-Bias Monte Carlo Back-Mapping Algorithm for Efficient and Rapid Conversion of Coarse-Grained Water Structures into Atomistic Models. J Phys Chem B 2018; 122:7102-7110. [DOI: 10.1021/acs.jpcb.8b01791] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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5
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Yoo B, Marin-Rimoldi E, Mullen RG, Jusufi A, Maginn EJ. Discrete Fractional Component Monte Carlo Simulation Study of Dilute Nonionic Surfactants at the Air-Water Interface. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:9793-9802. [PMID: 28845994 DOI: 10.1021/acs.langmuir.7b02058] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
We present a newly developed Monte Carlo scheme to predict bulk surfactant concentrations and surface tensions at the air-water interface for various surfactant interfacial coverages. Since the concentration regimes of these systems of interest are typically very dilute (≪10-5 mol. frac.), Monte Carlo simulations with the use of insertion/deletion moves can provide the ability to overcome finite system size limitations that often prohibit the use of modern molecular simulation techniques. In performing these simulations, we use the discrete fractional component Monte Carlo (DFCMC) method in the Gibbs ensemble framework, which allows us to separate the bulk and air-water interface into two separate boxes and efficiently swap tetraethylene glycol surfactants C10E4 between boxes. Combining this move with preferential translations, volume biased insertions, and Wang-Landau biasing vastly enhances sampling and helps overcome the classical "insertion problem", often encountered in non-lattice Monte Carlo simulations. We demonstrate that this methodology is both consistent with the original molecular thermodynamic theory (MTT) of Blankschtein and co-workers, as well as their recently modified theory (MD/MTT), which incorporates the results of surfactant infinite dilution transfer free energies and surface tension calculations obtained from molecular dynamics simulations.
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Affiliation(s)
- Brian Yoo
- Department of Chemical and Biomolecular Engineering, University of Notre Dame , 182 Fitzpatrick Hall, Notre Dame, Indiana 46556-5637, United States
| | - Eliseo Marin-Rimoldi
- Department of Chemical and Biomolecular Engineering, University of Notre Dame , 182 Fitzpatrick Hall, Notre Dame, Indiana 46556-5637, United States
| | - Ryan Gotchy Mullen
- Department of Chemical and Biomolecular Engineering, University of Notre Dame , 182 Fitzpatrick Hall, Notre Dame, Indiana 46556-5637, United States
| | - Arben Jusufi
- Corporate Strategic Research, ExxonMobil Research and Engineering Company , 1545 U.S. 22, Annandale, New Jersey 08801, United States
| | - Edward J Maginn
- Department of Chemical and Biomolecular Engineering, University of Notre Dame , 182 Fitzpatrick Hall, Notre Dame, Indiana 46556-5637, United States
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6
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Sepehri A, Loeffler TD, Chen B. Improving the Efficiency of Configurational-Bias Monte Carlo: Extension of the Jacobian–Gaussian Scheme to Interior Sections of Cyclic and Polymeric Molecules. J Chem Theory Comput 2017; 13:4043-4053. [DOI: 10.1021/acs.jctc.7b00478] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Aliasghar Sepehri
- Department of Chemistry, Louisiana State University, Baton
Rouge, Louisiana 70803-1804, United States
| | - Troy D. Loeffler
- Department of Chemistry, Louisiana State University, Baton
Rouge, Louisiana 70803-1804, United States
| | - Bin Chen
- Department of Chemistry, Louisiana State University, Baton
Rouge, Louisiana 70803-1804, United States
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7
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Patel LA, Kindt JT. Cluster Free Energies from Simple Simulations of Small Numbers of Aggregants: Nucleation of Liquid MTBE from Vapor and Aqueous Phases. J Chem Theory Comput 2017; 13:1023-1033. [DOI: 10.1021/acs.jctc.6b01237] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Lara A. Patel
- Department of Chemistry, Emory University, Atlanta, Georgia 30322, United States
| | - James T. Kindt
- Department of Chemistry, Emory University, Atlanta, Georgia 30322, United States
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8
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Desgranges C, Delhommelle J. Free energy calculations along entropic pathways. II. Droplet nucleation in binary mixtures. J Chem Phys 2016; 145:234505. [DOI: 10.1063/1.4972011] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Caroline Desgranges
- Department of Chemistry, University of North Dakota, Grand Forks, North Dakota 58202, USA
| | - Jerome Delhommelle
- Department of Chemistry, University of North Dakota, Grand Forks, North Dakota 58202, USA
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Desgranges C, Delhommelle J. Free energy calculations along entropic pathways. I. Homogeneous vapor-liquid nucleation for atomic and molecular systems. J Chem Phys 2016; 145:204112. [DOI: 10.1063/1.4968231] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Caroline Desgranges
- Department of Chemistry, University of North Dakota, Grand Forks, North Dakota 58202, USA
| | - Jerome Delhommelle
- Department of Chemistry, University of North Dakota, Grand Forks, North Dakota 58202, USA
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Hatch HW, Yang SY, Mittal J, Shen VK. Self-assembly of trimer colloids: effect of shape and interaction range. SOFT MATTER 2016; 12:4170-4179. [PMID: 27087490 PMCID: PMC4939708 DOI: 10.1039/c6sm00473c] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Trimers with one attractive bead and two repulsive beads, similar to recently synthesized trimer patchy colloids, were simulated with flat-histogram Monte Carlo methods to obtain the stable self-assembled structures for different shapes and interaction potentials. Extended corresponding states principle was successfully applied to self-assembling systems in order to approximately collapse the results for models with the same shape, but different interaction range. This helps us directly compare simulation results with previous experiment, and good agreement was found between the two. In addition, a variety of self-assembled structures were observed by varying the trimer geometry, including spherical clusters, elongated clusters, monolayers, and spherical shells. In conclusion, our results help to compare simulations and experiments, via extended corresponding states, and we predict the formation of self-assembled structures for trimer shapes that have not been experimentally synthesized.
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Affiliation(s)
- Harold W. Hatch
- Chemical Informatics Research Group, Chemical Sciences Division, National Institute of Standards and Technology, Gaithersburg, Maryland 20899-8380, USA;
| | - Seung-Yeob Yang
- Chemical Informatics Research Group, Chemical Sciences Division, National Institute of Standards and Technology, Gaithersburg, Maryland 20899-8380, USA;
| | - Jeetain Mittal
- Department of Chemical and Biomolecular Engineering, Lehigh University, Bethlehem, Pennsylvania 18015, USA;
| | - Vincent K. Shen
- Chemical Informatics Research Group, Chemical Sciences Division, National Institute of Standards and Technology, Gaithersburg, Maryland 20899-8380, USA;
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