1
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Manzhos S, Lüder J, Ihara M. Machine learning of kinetic energy densities with target and feature smoothing: Better results with fewer training data. J Chem Phys 2023; 159:234115. [PMID: 38112506 DOI: 10.1063/5.0175689] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 11/27/2023] [Indexed: 12/21/2023] Open
Abstract
Machine learning (ML) of kinetic energy functionals (KEFs), in particular kinetic energy density (KED) functionals, is a promising way to construct KEFs for orbital-free density functional theory (DFT). Neural networks and kernel methods including Gaussian process regression (GPR) have been used to learn Kohn-Sham (KS) KED from density-based descriptors derived from KS DFT calculations. The descriptors are typically expressed as functions of different powers and derivatives of the electron density. This can generate large and extremely unevenly distributed datasets, which complicates effective application of ML techniques. Very uneven data distributions require many training datapoints, can cause overfitting, and can ultimately lower the quality of an ML KED model. We show that one can produce more accurate ML models from fewer data by working with smoothed density-dependent variables and KED. Smoothing palliates the issue of very uneven data distributions and associated difficulties of sampling while retaining enough spatial structure necessary for working within the paradigm of KEDF. We use GPR as a function of smoothed terms of the fourth order gradient expansion and KS effective potential and obtain accurate and stable (with respect to different random choices of training points) kinetic energy models for Al, Mg, and Si simultaneously from as few as 2000 samples (about 0.3% of the total KS DFT data). In particular, accuracies on the order of 1% in a measure of the quality of energy-volume dependence B'=EV0-ΔV-2EV0+E(V0+ΔV)ΔV/V02 (where V0 is the equilibrium volume and ΔV is a deviation from it) are obtained simultaneously for all three materials.
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Affiliation(s)
- Sergei Manzhos
- School of Materials and Chemical Technology, Tokyo Institute of Technology, Ookayama 2-12-1, Meguro-ku, Tokyo 152-8552, Japan
| | - Johann Lüder
- Department of Materials and Optoelectronic Science, National Sun Yat-sen University, No. 70, Lien-Hai Road, Kaohsiung 80424, Taiwan
- Center of Crystal Research, National Sun Yat-sen University, No. 70, Lien-Hai Road, Kaohsiung 80424, Taiwan
- Center for Theoretical and Computational Physics, National Sun Yat-sen University, Kaohsiung 80424, Taiwan
| | - Manabu Ihara
- School of Materials and Chemical Technology, Tokyo Institute of Technology, Ookayama 2-12-1, Meguro-ku, Tokyo 152-8552, Japan
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2
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Mi W, Luo K, Trickey SB, Pavanello M. Orbital-Free Density Functional Theory: An Attractive Electronic Structure Method for Large-Scale First-Principles Simulations. Chem Rev 2023; 123:12039-12104. [PMID: 37870767 DOI: 10.1021/acs.chemrev.2c00758] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2023]
Abstract
Kohn-Sham Density Functional Theory (KSDFT) is the most widely used electronic structure method in chemistry, physics, and materials science, with thousands of calculations cited annually. This ubiquity is rooted in the favorable accuracy vs cost balance of KSDFT. Nonetheless, the ambitions and expectations of researchers for use of KSDFT in predictive simulations of large, complicated molecular systems are confronted with an intrinsic computational cost-scaling challenge. Particularly evident in the context of first-principles molecular dynamics, the challenge is the high cost-scaling associated with the computation of the Kohn-Sham orbitals. Orbital-free DFT (OFDFT), as the name suggests, circumvents entirely the explicit use of those orbitals. Without them, the structural and algorithmic complexity of KSDFT simplifies dramatically and near-linear scaling with system size irrespective of system state is achievable. Thus, much larger system sizes and longer simulation time scales (compared to conventional KSDFT) become accessible; hence, new chemical phenomena and new materials can be explored. In this review, we introduce the historical contexts of OFDFT, its theoretical basis, and the challenge of realizing its promise via approximate kinetic energy density functionals (KEDFs). We review recent progress on that challenge for an array of KEDFs, such as one-point, two-point, and machine-learnt, as well as some less explored forms. We emphasize use of exact constraints and the inevitability of design choices. Then, we survey the associated numerical techniques and implemented algorithms specific to OFDFT. We conclude with an illustrative sample of applications to showcase the power of OFDFT in materials science, chemistry, and physics.
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Affiliation(s)
- Wenhui Mi
- Key Laboratory of Material Simulation Methods & Software of Ministry of Education, College of Physics, Jilin University, Changchun 130012, PR China
- State Key Laboratory of Superhard Materials, Jilin University, Changchun 130012, PR China
- International Center of Future Science, Jilin University, Changchun 130012, PR China
| | - Kai Luo
- Department of Applied Physics, Nanjing University of Science and Technology, Nanjing 210094, PR China
| | - S B Trickey
- Quantum Theory Project, Department of Physics and Department of Chemistry, University of Florida, Gainesville, Florida 32611, United States
| | - Michele Pavanello
- Department of Physics and Department of Chemistry, Rutgers University, Newark, New Jersey 07102, United States
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3
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Tan CW, Pickard CJ, Witt WC. Automatic differentiation for orbital-free density functional theory. J Chem Phys 2023; 158:124801. [PMID: 37003740 DOI: 10.1063/5.0138429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2023] Open
Abstract
Differentiable programming has facilitated numerous methodological advances in scientific computing. Physics engines supporting automatic differentiation have simpler code, accelerating the development process and reducing the maintenance burden. Furthermore, fully differentiable simulation tools enable direct evaluation of challenging derivatives-including those directly related to properties measurable by experiment-that are conventionally computed with finite difference methods. Here, we investigate automatic differentiation in the context of orbital-free density functional theory (OFDFT) simulations of materials, introducing PROFESS-AD. Its automatic evaluation of properties derived from first derivatives, including functional potentials, forces, and stresses, facilitates the development and testing of new density functionals, while its direct evaluation of properties requiring higher-order derivatives, such as bulk moduli, elastic constants, and force constants, offers more concise implementations than conventional finite difference methods. For these reasons, PROFESS-AD serves as an excellent prototyping tool and provides new opportunities for OFDFT.
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Affiliation(s)
- Chuin Wei Tan
- Department of Materials Science and Metallurgy, University of Cambridge, 27 Charles Babbage Road, Cambridge CB3 0FS, United Kingdom
| | - Chris J Pickard
- Department of Materials Science and Metallurgy, University of Cambridge, 27 Charles Babbage Road, Cambridge CB3 0FS, United Kingdom
| | - William C Witt
- Department of Materials Science and Metallurgy, University of Cambridge, 27 Charles Babbage Road, Cambridge CB3 0FS, United Kingdom
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4
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Hao H, Ruiz Pestana L, Qian J, Liu M, Xu Q, Head‐Gordon T. Chemical transformations and transport phenomena at interfaces. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2022. [DOI: 10.1002/wcms.1639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Hongxia Hao
- Kenneth S. Pitzer Theory Center and Department of Chemistry University of California Berkeley California USA
- Chemical Sciences Division Lawrence Berkeley National Laboratory Berkeley California USA
| | - Luis Ruiz Pestana
- Department of Civil and Architectural Engineering University of Miami Coral Gables Florida USA
| | - Jin Qian
- Chemical Sciences Division Lawrence Berkeley National Laboratory Berkeley California USA
| | - Meili Liu
- Department of Civil and Architectural Engineering University of Miami Coral Gables Florida USA
| | - Qiang Xu
- Chemical Sciences Division Lawrence Berkeley National Laboratory Berkeley California USA
| | - Teresa Head‐Gordon
- Kenneth S. Pitzer Theory Center and Department of Chemistry University of California Berkeley California USA
- Chemical Sciences Division Lawrence Berkeley National Laboratory Berkeley California USA
- Department of Bioengineering and Chemical and Biomolecular Engineering University of California Berkeley California USA
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5
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Woo J, Kim H, Kim WY. Neural network-based pseudopotential: development of a transferable local pseudopotential. Phys Chem Chem Phys 2022; 24:20094-20103. [PMID: 35979874 DOI: 10.1039/d2cp01810a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Transferable local pseudopotentials (LPPs) are essential for fast quantum simulations of materials. However, various types of LPPs suffer from low transferability, especially since they do not consider the norm-conserving condition. Here we propose a novel approach based on a deep neural network to produce transferable LPPs. We introduced a generalized Kerker method expressed with the deep neural network to represent the norm-conserving pseudo-wavefunctions. Its unique feature is that all necessary conditions of pseudopotentials can be explicitly considered in terms of a loss function. Then, it can be minimized using the back-propagation technique just with single point all-electron atom data. To assess the transferability and accuracy of the neural network-based LPPs (NNLPs), we carried out density functional theory calculations for the s- and p-block elements of the second to the fourth periods. The NNLPs outperformed other types of LPPs in both atomic and bulk calculations for most elements. In particular, they showed good transferability by predicting various properties of bulk systems including binary alloys with higher accuracy than LPPs tailored to bulk data.
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Affiliation(s)
- Jeheon Woo
- Department of Chemistry, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea.
| | - Hyeonsu Kim
- Department of Chemistry, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea.
| | - Woo Youn Kim
- Department of Chemistry, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea.
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6
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Shao X, Mi W, Pavanello M. Density Embedding Method for Nanoscale Molecule-Metal Interfaces. J Phys Chem Lett 2022; 13:7147-7154. [PMID: 35901490 DOI: 10.1021/acs.jpclett.2c01424] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
In this work, we extend the applicability of standard Kohn-Sham DFT (KS-DFT) to model realistically sized molecule-metal interfaces where the metal slabs venture into the tens of nanometers in size. Employing state-of-the-art noninteracting kinetic energy functionals, we describe metallic subsystems with orbital-free DFT and combine their electronic structure with molecular subsystems computed at the KS-DFT level resulting in a multiscale subsystem DFT method. The method reproduces within a few millielectronvolts the binding energy difference of water and carbon dioxide molecules adsorbed on the top and hollow sites of an Al(111) surface compared to KS-DFT of the combined supersystem. It is also robust for Born-Oppenheimer molecular dynamics simulations. Very large system sizes are approached with standard computing resources thanks to a parallelization scheme that avoids accumulation of memory at the gather-scatter stage. The results as presented are encouraging and open the door to ab initio simulations of realistically sized, mesoscopic molecule-metal interfaces.
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Affiliation(s)
- Xuecheng Shao
- Department of Chemistry, Rutgers University, Newark, New Jersey 07102, United States
| | - Wenhui Mi
- International Center for Computational Method and Software, College of Physics, Jilin University, Changchun 130012, China
| | - Michele Pavanello
- Department of Chemistry, Rutgers University, Newark, New Jersey 07102, United States
- Department of Physics, Rutgers University, Newark, New Jersey 07102, United States
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7
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Bhan L, Covington CL, Varga K. Laser-Driven Petahertz Electron Ratchet Nanobubbles. NANO LETTERS 2022; 22:4240-4245. [PMID: 35561279 DOI: 10.1021/acs.nanolett.2c01399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
A laser-driven quantum electron ratchet nanodevice is proposed. The ratchet consists of a series of disconnected bubble-shaped nanodiode structures with a sharp tip to induce a large field enhancement. A laser pulse is used to create a plasmon oscillation in the vertical direction, and the shape of the bubble funnels the electrons toward the sharp tip leading to net electron transport in the horizontal direction. The electron current carries the fingerprint of the driving laser field. The system is modeled by using the time-dependent orbital free density functional theory with nanostructures containing thousands of atoms.
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Affiliation(s)
- Luke Bhan
- Department of Physics and Astronomy, Vanderbilt University, Nashville, Tennessee 37235, United States
| | - Cody L Covington
- Department of Chemistry, Austin Peay State University, Clarksville, Tennessee 37044, United States
| | - Kálmán Varga
- Department of Physics and Astronomy, Vanderbilt University, Nashville, Tennessee 37235, United States
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8
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Feed-Forward Neural Networks for Fitting of Kinetic Energy and its Functional Derivative. Chem Phys Lett 2022. [DOI: 10.1016/j.cplett.2022.139718] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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9
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Xu Q, Ma C, Mi W, Wang Y, Ma Y. Nonlocal pseudopotential energy density functional for orbital-free density functional theory. Nat Commun 2022; 13:1385. [PMID: 35296665 PMCID: PMC8927098 DOI: 10.1038/s41467-022-29002-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Accepted: 02/22/2022] [Indexed: 11/09/2022] Open
Abstract
Orbital-free density functional theory (OF-DFT) is an electronic structure method with a low computational cost that scales linearly with the number of simulated atoms, making it suitable for large-scale material simulations. It is generally considered that OF-DFT strictly requires the use of local pseudopotentials, rather than orbital-dependent nonlocal pseudopotentials, for the calculation of electron-ion interaction energies, as no orbitals are available. This is unfortunate situation since the nonlocal pseudopotentials are known to give much better transferability and calculation accuracy than local ones. We report here the development of a theoretical scheme that allows the direct use of nonlocal pseudopotentials in OF-DFT. In this scheme, a nonlocal pseudopotential energy density functional is derived by the projection of nonlocal pseudopotential onto the non-interacting density matrix (instead of "orbitals") that can be approximated explicitly as a functional of electron density. Our development defies the belief that nonlocal pseudopotentials are not applicable to OF-DFT, leading to the creation for an alternate theoretical framework of OF-DFT that works superior to the traditional approach.
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Affiliation(s)
- Qiang Xu
- International Center for Computational Methods and Software & State Key Lab of Superhard Materials, College of Physics, Jilin University, Changchun, 130012, China
| | - Cheng Ma
- International Center for Computational Methods and Software & State Key Lab of Superhard Materials, College of Physics, Jilin University, Changchun, 130012, China
| | - Wenhui Mi
- International Center for Computational Methods and Software & State Key Lab of Superhard Materials, College of Physics, Jilin University, Changchun, 130012, China
| | - Yanchao Wang
- International Center for Computational Methods and Software & State Key Lab of Superhard Materials, College of Physics, Jilin University, Changchun, 130012, China.
| | - Yanming Ma
- International Center for Computational Methods and Software & State Key Lab of Superhard Materials, College of Physics, Jilin University, Changchun, 130012, China
- International Center of Future Science, Jilin University, Changchun, 130012, China
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10
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Kumar S, Borda EL, Sadigh B, Zhu S, Hamel S, Gallagher B, Bulatov V, Klepeis J, Samanta A. Accurate parameterization of the kinetic energy functional. J Chem Phys 2022; 156:024110. [PMID: 35032986 DOI: 10.1063/5.0063629] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
The absence of a reliable formulation of the kinetic energy density functional has hindered the development of orbital free density functional theory. Using the data-aided learning paradigm, we propose a simple prescription to accurately model the kinetic energy density of any system. Our method relies on a dictionary of functional forms for local and nonlocal contributions, which have been proposed in the literature, and the appropriate coefficients are calculated via a linear regression framework. To model the nonlocal contributions, we explore two new nonlocal functionals-a functional that captures fluctuations in electronic density and a functional that incorporates gradient information. Since the analytical functional forms of the kernels present in these nonlocal terms are not known from theory, we propose a basis function expansion to model these seemingly difficult nonlocal quantities. This allows us to easily reconstruct kernels for any system using only a few structures. The proposed method is able to learn kinetic energy densities and total kinetic energies of molecular and periodic systems, such as H2, LiH, LiF, and a one-dimensional chain of eight hydrogens using data from Kohn-Sham density functional theory calculations for only a few structures.
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Affiliation(s)
- Shashikant Kumar
- Physics Division, Lawrence Livermore National Laboratory, Livermore, California 94550, USA
| | | | - Babak Sadigh
- Physics Division, Lawrence Livermore National Laboratory, Livermore, California 94550, USA
| | - Siya Zhu
- Physics Division, Lawrence Livermore National Laboratory, Livermore, California 94550, USA
| | - Sebastian Hamel
- Physics Division, Lawrence Livermore National Laboratory, Livermore, California 94550, USA
| | - Brian Gallagher
- Applications, Simulations and Quality Division, Lawrence Livermore National Laboratory, Livermore, California 94550, USA
| | - Vasily Bulatov
- Materials Science Division, Lawrence Livermore National Laboratory, Livermore, California 94550, USA
| | - John Klepeis
- Physics Division, Lawrence Livermore National Laboratory, Livermore, California 94550, USA
| | - Amit Samanta
- Physics Division, Lawrence Livermore National Laboratory, Livermore, California 94550, USA
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11
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Ghasemi SA, Kühne TD. Artificial neural networks for the kinetic energy functional of non-interacting fermions. J Chem Phys 2021; 154:074107. [PMID: 33607906 DOI: 10.1063/5.0037319] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023] Open
Abstract
A novel approach to find the fermionic non-interacting kinetic energy functional with chemical accuracy using machine learning techniques is presented. To that extent, we apply machine learning to an intermediate quantity rather than targeting the kinetic energy directly. We demonstrate the performance of the method for three model systems containing three and four electrons. The resulting kinetic energy functional remarkably accurately reproduces self-consistently the ground state electron density and total energy of reference Kohn-Sham calculations with an error of less than 5 mHa. This development opens a new avenue to advance orbital-free density functional theory by means of machine learning.
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Affiliation(s)
- S Alireza Ghasemi
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Chair of Theoretical Chemistry, Paderborn University, Warburger Str. 100, D-33098 Paderborn, Germany
| | - Thomas D Kühne
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Chair of Theoretical Chemistry, Paderborn University, Warburger Str. 100, D-33098 Paderborn, Germany
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12
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Cao P, Fang J, Gao X, Tian F, Song H. Tests on the Accuracy and Scalability of the Full-Potential DFT Method Based on Multiple Scattering Theory. Front Chem 2020; 8:590047. [PMID: 33344416 PMCID: PMC7746799 DOI: 10.3389/fchem.2020.590047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Accepted: 09/10/2020] [Indexed: 11/13/2022] Open
Abstract
We investigate a reduced scaling full-potential DFT method based on the multiple scattering theory (MST) code MuST, which is released online (https://github.com/mstsuite/MuST) very recently. First, we test the accuracy by calculating structural properties of typical body-centered cubic (BCC) metals (V, Nb, and Mo). It is shown that the calculated lattice parameters, bulk moduli, and elastic constants agree with those obtained from the VASP, WIEN2k, EMTO, and Elk codes. Second, we test the locally self-consistent multiple scattering (LSMS) mode, which achieves reduced scaling by neglecting the multiple scattering processes beyond a cut-off radius. In the case of Nb, the accuracy of 0.5 mRy/atom can be achieved with a cut-off radius of 20 Bohr, even when small deformations are imposed on the lattice. Despite that the calculation of valence states based on MST exhibits linear scaling, the whole computational procedure has an overall scaling of about O(N1.6), due to the fact that the updating of Coulomb potential scales almost as O(N2). Nevertheless, it can be still expected that MuST would provide a reliable and accessible way to large-scale first-principles simulations of metals and alloys.
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Affiliation(s)
- Peiyu Cao
- State Key Laboratory for Advanced Metals and Materials, University of Science and Technology Beijing, Beijing, China.,State Key Laboratory of Nonlinear Mechanics, Institute of Mechanics, Chinese Academy of Sciences, Beijing, China
| | - Jun Fang
- Laboratory of Computational Physics, Institute of Applied Physics and Computational Mathematics, Beijing, China
| | - Xingyu Gao
- Laboratory of Computational Physics, Institute of Applied Physics and Computational Mathematics, Beijing, China
| | - Fuyang Tian
- Institute for Applied Physics, University of Science and Technology Beijing, Beijing, China
| | - Haifeng Song
- Laboratory of Computational Physics, Institute of Applied Physics and Computational Mathematics, Beijing, China
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13
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Meyer R, Weichselbaum M, Hauser AW. Machine Learning Approaches toward Orbital-free Density Functional Theory: Simultaneous Training on the Kinetic Energy Density Functional and Its Functional Derivative. J Chem Theory Comput 2020; 16:5685-5694. [PMID: 32786898 PMCID: PMC7482319 DOI: 10.1021/acs.jctc.0c00580] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
![]()
Orbital-free
approaches might offer a way to boost the applicability
of density functional theory by orders of magnitude in system size.
An important ingredient for this endeavor is the kinetic energy density
functional. Snyder et al. [2012, 108, 25300223004593] presented a machine
learning approximation for this functional achieving chemical accuracy
on a one-dimensional model system. However, a poor performance with
respect to the functional derivative, a crucial element in iterative
energy minimization procedures, enforced the application of a computationally
expensive projection method. In this work we circumvent this issue
by including the functional derivative into the training of various
machine learning models. Besides kernel ridge regression, the original
method of choice, we also test the performance of convolutional neural
network techniques borrowed from the field of image recognition.
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Affiliation(s)
- Ralf Meyer
- Institute of Experimental Physics, Graz University of Technology, Petersgasse 16, 8010 Graz, Austria
| | - Manuel Weichselbaum
- Institute of Experimental Physics, Graz University of Technology, Petersgasse 16, 8010 Graz, Austria
| | - Andreas W Hauser
- Institute of Experimental Physics, Graz University of Technology, Petersgasse 16, 8010 Graz, Austria
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14
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Manzhos S, Golub P. Data-driven kinetic energy density fitting for orbital-free DFT: Linear vs Gaussian process regression. J Chem Phys 2020; 153:074104. [DOI: 10.1063/5.0015042] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Sergei Manzhos
- Centre Énergie Matériaux Télécommunications, Institut National de la Recherche Scientifique, 1650 Boulevard Lionel-Boulet, Varennes, Quebec J3X 1S2, Canada
| | - Pavlo Golub
- Department of Theoretical Chemistry, J. Heyrovský Institute of Physical Chemistry, Dolejškova 2155/3, 182 23 Prague 8, Czech Republic
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15
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Shao X, Jiang K, Mi W, Genova A, Pavanello M. DFTpy
: An efficient and object‐oriented platform for orbital‐free
DFT
simulations. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2020. [DOI: 10.1002/wcms.1482] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Xuecheng Shao
- Department of Chemistry Rutgers University Newark New Jersey USA
| | - Kaili Jiang
- Department of Chemistry Rutgers University Newark New Jersey USA
| | - Wenhui Mi
- Department of Chemistry Rutgers University Newark New Jersey USA
| | - Alessandro Genova
- Department of Chemistry Rutgers University Newark New Jersey USA
- Kitware Inc., 1712 U.S. 9 Suite 300, Clifton Park New York New York USA
| | - Michele Pavanello
- Department of Chemistry Rutgers University Newark New Jersey USA
- Department of Physics Rutgers University Newark New Jersey USA
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16
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Golub P, Manzhos S. Kinetic energy densities based on the fourth order gradient expansion: performance in different classes of materials and improvement via machine learning. Phys Chem Chem Phys 2018; 21:378-395. [PMID: 30525136 DOI: 10.1039/c8cp06433d] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We study the performance of fourth-order gradient expansions of the kinetic energy density (KED) in semi-local kinetic energy functionals depending on the density-dependent variables. The formal fourth-order expansion is convergent for periodic systems and small molecules but does not improve over the second-order expansion (the Thomas-Fermi term plus one-ninth of the von Weizsäcker term). Linear fitting of the expansion coefficients somewhat improves on the formal expansion. The tuning of the fourth order expansion coefficients allows for better reproducibility of the Kohn-Sham kinetic energy density than the tuning of the second-order expansion coefficients alone. The possibility of a much more accurate match with the Kohn-Sham kinetic energy density by using neural networks (NN) trained using the terms of the 4th order expansion as density-dependent variables is demonstrated. We obtain ultra-low fitting errors without overfitting of NN parameters. Small single hidden layer neural networks can provide good accuracy in separate KED fits of each compound, while for joint fitting of KEDs of multiple compounds multiple hidden layers were required to achieve good fit quality. The critical issue of data distribution is highlighted. We also show the critical role of pseudopotentials in the performance of the expansion, where in the case of a too rapid decay of the valence density at the nucleus with some pseudopotentials, numeric instabilities can arise.
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Affiliation(s)
- Pavlo Golub
- Department of Mechanical Engineering, National University of Singapore, Block EA #07-08, 9 Engineering Drive 1, Singapore 117576.
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17
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del Rio BG, Dieterich JM, Carter EA. Globally-Optimized Local Pseudopotentials for (Orbital-Free) Density Functional Theory Simulations of Liquids and Solids. J Chem Theory Comput 2017; 13:3684-3695. [DOI: 10.1021/acs.jctc.7b00565] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Beatriz G. del Rio
- Departamento
de Física Teórica, Facultad de Ciencias, Universidad de Valladolid, 47002 Valladolid, Spain
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18
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Wasserman A, Nafziger J, Jiang K, Kim MC, Sim E, Burke K. The Importance of Being Inconsistent. Annu Rev Phys Chem 2017; 68:555-581. [PMID: 28463652 DOI: 10.1146/annurev-physchem-052516-044957] [Citation(s) in RCA: 74] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Adam Wasserman
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907
- Department of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907
| | - Jonathan Nafziger
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907
| | - Kaili Jiang
- Department of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907
| | - Min-Cheol Kim
- Department of Chemistry, Yonsei University, Seoul 03722, South Korea
| | - Eunji Sim
- Department of Chemistry, Yonsei University, Seoul 03722, South Korea
| | - Kieron Burke
- Department of Chemistry, University of California, Irvine, California 92697
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Dieterich JM, Witt WC, Carter EA. libKEDF: An accelerated library of kinetic energy density functionals. J Comput Chem 2017; 38:1552-1559. [DOI: 10.1002/jcc.24806] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2017] [Revised: 03/22/2017] [Accepted: 03/24/2017] [Indexed: 01/09/2023]
Affiliation(s)
- Johannes M. Dieterich
- Department of Mechanical and Aerospace EngineeringPrinceton UniversityPrinceton New Jersey08544‐5263
| | - William C. Witt
- Department of Mechanical and Aerospace EngineeringPrinceton UniversityPrinceton New Jersey08544‐5263
| | - Emily A. Carter
- School of Engineering and Applied SciencePrinceton UniversityPrinceton New Jersey08544‐5263
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