Automatic Construction of the Initial Orbitals for Efficient Generalized Valence Bond Calculations of Large Systems

XMECP: Reaching State-of-the-Art MECP Optimization in Multiscale Complex Systems

The Python-based program, XMECP, is developed for realizing robust, efficient, and state-of-the-art minimum energy crossing point (MECP) optimization in multiscale complex systems. This article introduces the basic capabilities of the XMECP program by theoretically investigating the MECP mechanism of several example systems including (1) the photosensitization mechanism of benzophenone, (2) photoinduced proton-coupled electron transfer in the cytosine-guanine base pair in DNA, (3) the spin-flip process in oxygen activation catalyzed by an iron-containing 2-oxoglutarate-dependent oxygenase (Fe/2OGX), and (4) the photochemical pathway of flavoprotein adjusted by the intensity of an external electric field. MECPs related to multistate reaction and multistate reactivity in large-scale complex biochemical systems can be well-treated by workflows suggested by the XMECP program. The branching plane updating the MECP optimization algorithm is strongly recommended as it provides derivative coupling vector (DCV) with explicit calculation and can equivalently evaluate contributions from non-QM residues to DCV, which can be nonadiabatic coupling or spin-orbit coupling in different cases. In the discussed QM/MM examples, we also found that the influence on the QM region by DCV can occur through noncovalent interactions and decay with distance. In the example of DNA base pairs, the nonadiabatic coupling occurs across the π-π stacking structure formed in the double-helix system. In contrast to general intuition, in the example of Fe/2OGX, the central ferrous and oxygen part contribute little to the spin-orbit coupling; however, a nearby arginine residue, which is treated by molecular mechanics in the QM/MM method, contributes significantly via two hydrogen bonds formed with α-ketoglutarate (α-KG). This indicates that the arginine residue plays a significant role in oxygen activation, driving the initial triplet state toward the productive quintet state, which is more than the previous knowledge that the arginine residue can bind α-KG at the reaction site by hydrogen bonds.

Theoretical Study on Ethylamine Dissociation Reactions Using VRC-VTST and SS-QRRK Methods

Barrierless bond dissociation reactions play an important role in fuel combustion. In this work, the pressure-dependent dissociation rate constants of ethylamine (EA) are accurately determined using variable-reaction-coordinate variational transition-state theory combined with the system-specific quantum Rice-Ramsperger-Kassel method. Before the kinetics calculations, the performances of four density functional theory methods in describing the bond dissociation of EA are evaluated against the benchmark method, FIC-MRCISD(T)+Q/cc-pVTZ, and the MN15-L/cc-pVTZ method is the best choice. By comparison of the Gibbs free energies and the rate constants for the bond dissociation reactions of EA, ethanol, and propane, the influence of functional groups on the reaction kinetics is discussed. The kinetics calculations show that the dissociation rate constants of EA are sensitive to pressure at low pressures and high temperatures, and the dominant channel is the reaction that yields C2H5 and NH2 radicals. A literature combustion model of EA is updated with our calculations, and the satisfactory agreement between the model predictions and reported ignition delay times of EA suggests the reliability of our calculations.

Block-Correlated Coupled Cluster Theory with up to Four-Pair Correlation for Accurate Static Correlation of Strongly Correlated Systems

A block-correlated coupled cluster method with up to four-pair correlation based on the generalized valence bond wave function (GVB-BCCC4) is first implemented, which offers an alternative method for electronic structure calculations of strongly correlated systems. We developed some techniques to derive a set of compact and cost-effective equations for GVB-BCCC4, which include the definition of n-block (n = 1-4) Hamiltonian matrices, the combination of excitation operators, and the definition of independent amplitudes. We then applied the GVB-BCCC4 method to investigate several potential energy surfaces of strongly correlated systems with singlet ground states. Our calculations demonstrate that the GVB-BCCC4 method can provide nearly exact static correlation energies as the density matrix renormalization group method (on the basis of the same GVB orbitals). This work highlights the significance of four-pair correlation in quantitative descriptions of static correlation energy for strongly correlated systems.

Single Reference Treatment of Strongly Correlated H4 and H10 Isomers with Richardson-Gaudin States

Richardson-Gaudin (RG) states are employed as a variational wave function ansatz for strongly correlated isomers of H4 and H10. In each case, a single RG state describes the seniority-zero sector quite well. Simple natural orbital functionals offer a cheap and reasonable approximation of the outstanding weak correlation in the seniority-zero sector, while systematic improvement is achieved by performing a configuration interaction in terms of RG states.

The Nature of the Chemical Bonds of High-Valent Transition-Metal Oxo (M=O) and Peroxo (MOO) Compounds: A Historical Perspective of the Metal Oxyl-Radical Character by the Classical to Quantum Computations

This review article describes a historical perspective of elucidation of the nature of the chemical bonds of the high-valent transition metal oxo (M=O) and peroxo (M-O-O) compounds in chemistry and biology. The basic concepts and theoretical backgrounds of the broken-symmetry (BS) method are revisited to explain orbital symmetry conservation and orbital symmetry breaking for the theoretical characterization of four different mechanisms of chemical reactions. Beyond BS methods using the natural orbitals (UNO) of the BS solutions, such as UNO CI (CC), are also revisited for the elucidation of the scope and applicability of the BS methods. Several chemical indices have been derived as the conceptual bridges between the BS and beyond BS methods. The BS molecular orbital models have been employed to explain the metal oxyl-radical character of the M=O and M-O-O bonds, which respond to their radical reactivity. The isolobal and isospin analogy between carbonyl oxide R2C-O-O and metal peroxide LFe-O-O has been applied to understand and explain the chameleonic chemical reactivity of these compounds. The isolobal and isospin analogy among Fe=O, O=O, and O have also provided the triplet atomic oxygen (3O) model for non-heme Fe(IV)=O species with strong radical reactivity. The chameleonic reactivity of the compounds I (Cpd I) and II (Cpd II) is also explained by this analogy. The early proposals obtained by these theoretical models have been examined based on recent computational results by hybrid DFT (UHDFT), DLPNO CCSD(T0), CASPT2, and UNO CI (CC) methods and quantum computing (QC).

Equation-of-Motion Block-Correlated Coupled Cluster Method for Excited Electronic States of Strongly Correlated Systems

An equation-of-motion block-correlated coupled cluster method based on the generalized valence bond wave function (EOM-GVB-BCCC) is proposed to describe low-lying excited states for strongly correlated systems. The EOM-GVB-BCCC2b method with up to two-pair correlation has been implemented and tested for a few strongly correlated systems. For a water hexamer with stretched O-H bonds, which is beyond the capability of the CASSCF method, EOM-GVB-BCCC2b provides very close results as the density matrix renormalization group (DMRG). For four conjugated diradical species with triplet ground states, we found that their vertical S-T gaps from EOM-GVB-BCCC2b are also quite consistent with the DMRG results. This new method is expected to be a promising theoretical tool for describing the low-lying excited states of strongly correlated systems with large active spaces.

Sparsity of the electron repulsion integral tensor using different localized virtual orbital representations in local second-order Møller-Plesset theory

Utilizing localized orbitals, local correlation theory can reduce the unphysically high system-size scaling of post-Hartree-Fock (post-HF) methods to linear scaling in insulating molecules. The sparsity of the four-index electron repulsion integral (ERI) tensor is central to achieving this reduction. For second-order Møller-Plesset theory (MP2), one of the simplest post-HF methods, only the (ia|jb) ERIs are needed, coupling occupied orbitals i, j and virtuals a, b. In this paper, we compare the numerical sparsity (called the "ragged list") and two other approaches revealing the low-rank sparsity of the ERI. The ragged list requires only one set of (localized) virtual orbitals, and we find that the orthogonal valence virtual-hard virtual set of virtuals originally proposed by Subotnik et al. gives the sparsest ERI tensor. To further compress the ERI tensor, the pair natural orbital (PNO) type representation uses different sets of virtual orbitals for different occupied orbital pairs, while the occupied-specific virtual (OSV) approach uses different virtuals for each occupied orbital. Our results indicate that while the low-rank PNO representation achieves significant rank reduction, it also requires more memory than the ragged list. The OSV approach requires similar memory to that of the ragged list, but it involves greater algorithmic complexity. An approximation (called the "fixed sparsity pattern") for solving the local MP2 equations using the numerically sparse ERI tensor is proposed and tested to be sufficiently accurate and to have highly controllable error. A low-scaling local MP2 algorithm based on the ragged list and the fixed sparsity pattern is therefore promising.

Nonorthogonal Active Space Decomposition of Wave Functions with Multiple Correlation Mechanisms

The nonorthogonal active space decomposition (NO-ASD) methodology is proposed for describing systems containing multiple correlation mechanisms. NO-ASD partitions the wave function by a correlation mechanism, such that the interactions between different correlation mechanisms are treated with an effective Hamiltonian approach, while interactions between correlated orbitals in the same correlation mechanism are treated explicitly. As a result, the determinant expansion scales polynomially with the number of correlation mechanisms rather than exponentially, which significantly reduces the factorial scaling associated with the size of the correlated orbital space. Despite the nonorthogonal framework of NO-ASD, the approach can take advantage of computational efficient matrix element evaluation when performing nonorthogonal coupling of orthogonal determinant expansions. In this work, we introduce and examine the NO-ASD approach in comparison to complete active space methods to establish how the NO-ASD approach reduces the problem dimensionality and the extent to which it affects the amount of correlation energy recovered. Calculations are performed on ozone, nickel-acetylene, and isomers of μ-oxo dicopper ammonia.

Geminal-based electronic structure methods in quantum chemistry. Toward a geminal model chemistry

In this review, we discuss the recent progress in developing geminal-based theories for challenging problems in quantum chemistry. Specifically, we focus on the antisymmetrized geminal power, generalized valence bond, antisymmetrized product of strongly orthogonal geminals, singlet-type orthogonal geminals, the antisymmetric product of 1-reference orbital geminal, also known as the pair coupled cluster doubles ansatz, and geminals constructed from Richardson-Gaudin states. Furthermore, we review various corrections to account for the missing dynamical correlation effects in geminal models and possible extensions to target electronically excited states and open-shell species. Finally, we discuss some numerical examples and present-day challenges for geminal-based models, including a quantitative and qualitative analysis of wave functions, and software availability.

Efficient Implementation of Block-Correlated Coupled Cluster Theory Based on the Generalized Valence Bond Reference for Strongly Correlated Systems

An optimized implementation of block-correlated coupled cluster theory based on the generalized valence bond wave function (GVB-BCCC) for the singlet ground state of strongly correlated systems is presented. The GVB-BCCC method with two-pair correlation (GVB-BCCC2b) or up to three-pair correlation (GVB-BCCC3b) will be the focus of this work. Three major techniques have been adopted to dramatically accelerate GVB-BCCC2b and GVB-BCCC3b calculations. First, the GVB-BCCC2b and GVB-BCCC3b codes are noticeably optimized by removing redundant calculations. Second, independent amplitudes are identified by constraining excited configurations to be pure singlet states and only independent amplitudes need to be solved. Third, an incremental updating scheme for the amplitudes in solving the GVB-BCCC equations is adopted. With these techniques, accurate GVB-BCCC3b calculations are now accessible for systems with relatively large active spaces (50 electrons in 50 orbitals) and GVB-BCCC2b calculations are affordable for systems with much larger active spaces. We have applied GVB-BCCC methods to investigate three typical kinds of systems: polyacenes, pentaprismane, and [Cu₂O₂]²⁺ isomers. For polyacenes, we demonstrate that GVB-BCCC3b can capture more than 94% of the total correlation energy even for 12-acene with 50 π electrons. For the potential energy curve of simultaneously stretching 15 C-C bonds in pentaprismane, our calculations show that the GVB-BCCC3b results are quite close to the results from the density matrix renormalization group (DMRG) over the whole range. For two dinuclear copper oxide isomers, their relative energy predicted by GVB-BCCC3b is also in good accord with the DMRG result. All calculations show that the inclusion of three-pair correlation in GVB-BCCC is critical for accurate descriptions of strongly correlated systems.

Non-iterative Method for Constructing Valence Antibonding Molecular Orbitals and a Molecule-adapted Minimum Basis

While bonding molecular orbitals exhibit constructive interference relative to atomic orbitals, antibonding orbitals show destructive interference. When full localization of occupied orbitals into bonds is possible, bonding and antibonding orbitals exist in 1:1 correspondence with each other. Antibonding orbitals play an important role in chemistry because they are frontier orbitals that determine orbital interactions, as well as much of the response of the bonding orbital to perturbations. In this work, we present an efficient method to construct antibonding orbitals by finding the orbital that yields the maximum opposite spin pair correlation amplitude in second order perturbation theory (AB2) and compare it with other techniques with increasing the size of the basis set. We conclude the AB2 antibonding orbitals are a more robust alternative to the Sano orbitals as initial guesses for valence bond calculations, due to having a useful basis set limit. The AB2 orbitals are also useful for efficiently constructing an active space, and work as good initial guesses for valence excited states. In addition, when combined with the localized occupied orbitals, and relocalized, the result is a set of molecule-adapted minimal basis functions that is built without any reference to atomic orbitals of the free atom. As examples, they are applied to population analysis of halogenated methane derivatives, H-Be-Cl, and \ce{SF6} where they show some advantages relative to good alternative methods.

An efficient implementation of time-dependent linear-response theory for strongly orthogonal geminal wave function models

We present an implementation of time-dependent linear-response equations for strongly orthogonal geminal wave function models: the generalized valence bond perfect-pairing theory (TD-GVB) and the antisymmetrized product of strongly orthogonal geminals (TD-APSG). The geminal wave functions are optimized using a restricted-step second-order algorithm suitable for handling many geminals, and the linear-response equations are solved in an efficient way using a direct iterative approach. The wave function optimization algorithm features an original scheme to create initial orbitals for the geminal functions in a black-box fashion. The implementation is employed to examine the accuracy of the geminal linear response for singlet excitation energies of small and medium-sized molecules. In systems dominated by dynamic correlation, geminal models constitute only a minor improvement with respect to time-dependent Hartree-Fock. Compared to linear-response complete active space self-consistent field (LR-CASSCF), TD-GVB either misses or gives large errors for states dominated by double excitations.

iCAS: Imposed Automatic Selection and Localization of Complete Active Spaces

It is shown that in the spirit of "from fragments to molecule" for localizing molecular orbitals [J. Chem. Theory Comput. 2011, 7, 3643], a prechosen set of occupied/virtual valence/core atomic/fragmental orbitals can be transformed to an equivalent set of localized occupied/virtual pre-localized molecular orbitals (pre-LMO), which can then be taken as probes to select the same number of maximally matching localized occupied/virtual Hartree-Fock (HF) or restricted open-shell HF (ROHF) molecular orbitals as the initial local orbitals spanning the desired complete active space (CAS). In each cycle of the self-consistent field (SCF) calculation, the CASSCF orbitals can be localized by means of the noniterative "top-down least-change" algorithm for localizing ROHF orbitals [J. Chem. Phys. 2017, 146, 104104] such that the maximum matching between the orbitals of two adjacent iterations can readily be monitored, leading finally to converged localized CASSCF orbitals that overlap most the guess orbitals. Such an approach is to be dubbed as "imposed CASSCF" (iCASSCF or simply iCAS in short) for good reasons: (1) it has been assumed that only those electronic states that have largest projections onto the active space defined by the prechosen atomic/fragmental orbitals are to be targeted. This is certainly an imposed constraint but has wide applications in organic and transition metal chemistry where valence (or core) atomic/fragmental orbitals can readily be identified. (2) The selection of both initial and optimized local active orbitals is imposed from the very beginning by the pre-LMOs (which span the same space as the prechosen atomic/fragmental orbitals). Apart from the (imposed) automation and localization, iCAS has two additional merits: (a) the guess orbitals are guaranteed to be the same for all geometries, for the pre-LMOs do not change in character with geometry and (b) the use of localized orbitals facilitates the SCF convergence, particularly for large active spaces. Both organic molecules and transition-metal complexes are taken as showcases to reveal the efficacy of iCAS.

Automatic Selection of Active Orbitals from Generalized Valence Bond Orbitals

The accurate multireference (MR) calculation of a strongly correlated chemical system usually relies on a correct preselection of a small number of active orbitals from numerous molecular orbitals. Currently, the active orbitals are generally determined by using a trial-and-error method. Such a preselection by chemical intuition and personal experience may be tedious or unreliable, especially for large complicated systems, and accordingly, the construction of active space becomes a bottleneck for large-scale MR calculations. In this work, we propose to automatically select the active orbitals according to the natural orbital occupation numbers by performing black box generalized valence bond calculations. We demonstrate the accuracy of this method through testing calculations of the ground states in various systems, ranging from bond dissociation of diatomic molecules (N₂, C₂, Cr₂) to conjugated molecules (pentacene, hexacene, and heptacene) as well as a binuclear transition-metal complex [Mn₂O₂(H₂O)₂(terpy)₂]³⁺ (terpy = 2,2':6,2″-terpyridine) with active spaces up to (30e, 30o) and comparing with the complete active space self-consistent field (CASSCF), density matrix renormalization group (DMRG)-CASSCF references, and other recently proposed inexpensive strategies for constructing active spaces. The results indicate that our method is among the most successful ones within our comparison, providing high-quality initial active orbitals very close to the finally optimized (DMRG-)CASSCF orbitals. The method proposed here is expected to greatly benefit the practical implementation of large active space ground-state MR calculations, for example, large-scale DMRG calculations.

Describing Strong Correlation with Block-Correlated Coupled Cluster Theory

A block-correlated coupled cluster (BCCC) method based on the generalized valence bond (GVB) wave function (GVB-BCCC in short) is proposed and implemented at the ab initio level, which represents an attractive multireference electronic structure method for strongly correlated systems. The GVB-BCCC method is demonstrated to provide satisfactory descriptions for multiple bond breaking in small molecules, although the GVB reference function is qualitatively wrong for the studied processes. For a challenging prototype of strongly correlated systems, tridecane with all 12 single C-C bonds at various distances, our calculations have shown that the GVB-BCCC2b method can provide highly comparable results as the density matrix renormalization group method for potential energy surfaces along simultaneous dissociation of all C-C bonds.