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Roque JPL, Rosado MTS, Fausto R, Reva I. Dual Photochemistry of Benzimidazole. J Org Chem 2023; 88:2884-2897. [PMID: 36795993 PMCID: PMC9990075 DOI: 10.1021/acs.joc.2c02560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/18/2023]
Abstract
Monomers of benzimidazole trapped in an argon matrix at 15 K were characterized by vibrational spectroscopy and identified as 1H-tautomers exclusively. The photochemistry of matrix-isolated 1H-benzimidazole was induced by excitations with a frequency-tunable narrowband UV light and followed spectroscopically. Hitherto unobserved photoproducts were identified as 4H- and 6H-tautomers. Simultaneously, a family of photoproducts bearing the isocyano moiety was identified. Thereby, the photochemistry of benzimidazole was hypothesized to follow two reaction pathways: the fixed-ring and the ring-opening isomerizations. The former reaction channel results in the cleavage of the NH bond and formation of a benzimidazolyl radical and an H-atom. The latter reaction channel involves the cleavage of the five-membered ring and concomitant shift of the H-atom from the CH bond of the imidazole moiety to the neighboring NH group, leading to 2-isocyanoaniline and subsequently to the isocyanoanilinyl radical. The mechanistic analysis of the observed photochemistry suggests that detached H-atoms, in both cases, recombine with the benzimidazolyl or isocyanoanilinyl radicals, predominantly at the positions with the largest spin density (revealed using the natural bond analysis computations). The photochemistry of benzimidazole therefore occupies an intermediate position between the earlier studied prototype cases of indole and benzoxazole, which exhibit exclusively the fixed-ring and the ring-opening photochemistries, respectively.
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Affiliation(s)
- José P L Roque
- CQC-IMS, Department of Chemistry, University of Coimbra, Coimbra 3004-535, Portugal
| | - Mário T S Rosado
- CQC-IMS, Department of Chemistry, University of Coimbra, Coimbra 3004-535, Portugal
| | - Rui Fausto
- CQC-IMS, Department of Chemistry, University of Coimbra, Coimbra 3004-535, Portugal
| | - Igor Reva
- CQC-IMS, Department of Chemistry, University of Coimbra, Coimbra 3004-535, Portugal.,CIEPQPF, Department of Chemical Engineering, University of Coimbra, Coimbra 3030-790, Portugal
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Lopes Jesus AJ, de Lucena Júnior JR, Fausto R, Reva I. Infrared Spectra and Phototransformations of meta-Fluorophenol Isolated in Argon and Nitrogen Matrices. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27238248. [PMID: 36500356 PMCID: PMC9735537 DOI: 10.3390/molecules27238248] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/22/2022] [Revised: 11/18/2022] [Accepted: 11/21/2022] [Indexed: 11/29/2022]
Abstract
Monomers of meta-fluorophenol (mFP) were trapped from the gas phase into cryogenic argon and nitrogen matrices. The estimated relative energies of the two conformers are very close, and in the gas phase they have nearly equal populations. Due to the similarity of their structures (they only differ in the orientation of the OH group), the two conformers have also similar predicted vibrational signatures, which makes the vibrational characterization of the individual rotamers challenging. In the present work, it has been established that in an argon matrix only the most stable trans conformer of mFP exists (the OH group pointing away from the fluorine atom). On the other hand, the IR spectrum of mFP in a nitrogen matrix testifies to the simultaneous presence in this matrix of both the trans conformer and of the higher-energy cis conformer (the OH group pointing toward the fluorine atom), which is stabilized by interaction with the matrix gas host. We found that the exposition of the cryogenic N2 matrix to the Globar source of the infrared spectrometer affects the conformational populations. By collecting experimental spectra, either in the full mid-infrared range or only in the range below 2200 cm-1, we were able to reliably distinguish two sets of experimental bands originating from individual conformers. A comparison of the two sets of experimental bands with computed infrared spectra of the conformers allowed, for the first time, the unequivocal vibrational identification of each of them. The joint implementation of computational vibrational spectroscopy and matrix-isolation infrared spectroscopy proved to be a very accurate method of structural analysis. Some mechanistic insights into conformational isomerism (the quantum tunneling of hydrogen atom and vibrationally-induced conformational transformations) have been addressed. Finally, we also subjected matrix-isolated mFP to irradiations with UV light, and the phototransformations observed in these experiments are also described.
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Affiliation(s)
- A. J. Lopes Jesus
- CQC-IMS, Faculty of Pharmacy, University of Coimbra, 3004-295 Coimbra, Portugal
- Correspondence: (A.J.L.J.); (I.R.)
| | | | - Rui Fausto
- CQC-IMS, Department of Chemistry, University of Coimbra, 3004-535 Coimbra, Portugal
| | - Igor Reva
- CQC-IMS, Department of Chemistry, University of Coimbra, 3004-535 Coimbra, Portugal
- CIEPQPF, Department of Chemical Engineering, University of Coimbra, 3030-790 Coimbra, Portugal
- Correspondence: (A.J.L.J.); (I.R.)
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Pan Z, Bodi A, van Bokhoven JA, Hemberger P. On the absolute photoionization cross section and threshold photoelectron spectrum of two reactive ketenes in lignin valorization: fulvenone and 2-carbonyl cyclohexadienone. Phys Chem Chem Phys 2022; 24:3655-3663. [PMID: 35080222 PMCID: PMC8827046 DOI: 10.1039/d1cp05206c] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
We report the absolute photoionization cross section (PICS) of fulvenone and 2-carbonyl cyclohexadienone, two crucial ketene intermediates in lignin pyrolysis, combustion and organic synthesis. Both species were generated in situ by pyrolyzing salicylamide and dectected via imaging photoelectron photoion coincidence spectroscopy. In a deamination reaction, salicylamide loses ammonia yielding 2-carbonyl cyclohexadienone, a ketoketene, which further decarbonylates at higher pyrolysis temperatures to form fulvenone. We recorded the threshold photoelectron spectrum of the ketoketene and assigned the ground state (X̃+2A′′ ← X̃1A′) and excited state (Ã+2A′ ← X̃1A′) bands with the help of Franck–Condon simulations. Adiabatic ionization energies are 8.35 ± 0.01 and 9.19 ± 0.01 eV. In a minor reaction channel, the ketoketene isomerizes to benzpropiolactone, which decomposes subsequently to benzyne by CO2 loss. Potential energy surface and RRKM rate constant calculations agree with our experimental observations that the decarbonylation to fulvenone outcompetes the decarboxylation to benzyne by almost two orders of magnitude. The absolute PICS of fulvenone at 10.48 eV was determined to be 18.8 ± 3.8 Mb using NH3 as a calibrant. The PICS of 2-carbonyl cyclohexadienone was found to be 21.5 ± 8.6 Mb at 9 eV. Our PICS measument will enable the quantification of reactive ketenes in lignin valorization and combustion processes using photoionization techniques and provide advanced mechanistic and kinetics insights to aid the bottom-up optimization of such processes. The absolute photoionization cross section (PICS) of these crucial ketene intermediates supports their quantification in lignin pyrolysis, combustion and organic synthesis.![]()
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Affiliation(s)
- Zeyou Pan
- Zeyou Pan, Andras Bodi, Jeroen A. van Bokhoven and Patrick Hemberger, Paul Scherrer Institute, 5232 Villigen, Switzerland. .,Zeyou Pan and Jeroen A. van Bokhoven, Institute for Chemical and Bioengineering, Department of Chemistry and Applied Biosciences, ETH Zurich, 8093 Zurich, Switzerland
| | - Andras Bodi
- Zeyou Pan, Andras Bodi, Jeroen A. van Bokhoven and Patrick Hemberger, Paul Scherrer Institute, 5232 Villigen, Switzerland.
| | - Jeroen A van Bokhoven
- Zeyou Pan, Andras Bodi, Jeroen A. van Bokhoven and Patrick Hemberger, Paul Scherrer Institute, 5232 Villigen, Switzerland. .,Zeyou Pan and Jeroen A. van Bokhoven, Institute for Chemical and Bioengineering, Department of Chemistry and Applied Biosciences, ETH Zurich, 8093 Zurich, Switzerland
| | - Patrick Hemberger
- Zeyou Pan, Andras Bodi, Jeroen A. van Bokhoven and Patrick Hemberger, Paul Scherrer Institute, 5232 Villigen, Switzerland.
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Lopes Jesus AJ, Fausto R, Reva I. Conformational Space, IR-Induced, and UV-Induced Chemistry of Carvacrol Isolated in a Low-Temperature Argon Matrix. J Phys Chem A 2021; 125:8215-8229. [PMID: 34506137 DOI: 10.1021/acs.jpca.1c05907] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
In this work, monomers of carvacrol (5-isopropyl-2-methylphenol), a natural monoterpene exhibiting wide range bioactivity, were trapped in a cryogenic argon matrix and characterized by infrared spectroscopy, while quantum chemical calculations at the B3LYP and MP2 levels were employed to characterize the conformational landscape of the isolated molecule. Four conformers have been localized on the potential energy surface, and the factors accounting for their relative stability were analyzed. The two most stable conformers of carvacrol, differing in the relative orientation of the isopropyl group and both having the OH group pointing away from the vicinal methyl fragment, were identified in the cryomatrix for the first time. The individual spectral signatures of the two conformers were distinguished based on the change in their relative abundance induced by exposing the matrix to broadband infrared light. Matrix-isolated carvacrol was also irradiated with broadband UV light (λ > 200 nm), which resulted in the cleavage of the OH group. Recombination of the released H atom at the ortho- or para-position of the ring resulted in the formation of alkyl-substituted cyclohexadienones. These were found to undergo subsequent valence and open-ring isomerizations, leading, respectively, to the formation of a Dewar isomer and open-chain conjugated ketenes. Decarbonylation of the photoproducts was also observed for longer irradiation times. A mechanistic analysis of the observed photochemical transformations is presented.
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Affiliation(s)
- A J Lopes Jesus
- University of Coimbra, CQC, Faculty of Pharmacy, 3004-295 Coimbra, Portugal
| | - Rui Fausto
- University of Coimbra, CQC, Department of Chemistry, 3004-535 Coimbra, Portugal
| | - Igor Reva
- University of Coimbra, CQC, Department of Chemistry, 3004-535 Coimbra, Portugal.,University of Coimbra, CIEPQPF, Department of Chemical Engineering, 3030-790 Coimbra, Portugal
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Genossar N, Ormond TK, Baraban JH. The matrix infrared spectra of fulvenone (C5H4=C=O) and its thermal decomposition products. Mol Phys 2021. [DOI: 10.1080/00268976.2021.1961907] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- N. Genossar
- Department of Chemistry, Ben-Gurion University of the Negev, Beer Sheva, Israel
- Israel Atomic Energy Commission, Tel Aviv, Israel
| | - T. K. Ormond
- National Renewable Energy Laboratory, Golden, CO, USA
- Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, USA
| | - J. H. Baraban
- Department of Chemistry, Ben-Gurion University of the Negev, Beer Sheva, Israel
- Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, USA
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