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López-Corbalán V, Fuertes A, Llamas-Saiz AL, Amorín M, Granja JR. Recognition of anion-water clusters by peptide-based supramolecular capsules. Nat Commun 2024; 15:6055. [PMID: 39025854 PMCID: PMC11258365 DOI: 10.1038/s41467-024-50193-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Accepted: 06/26/2024] [Indexed: 07/20/2024] Open
Abstract
The biological and technological importance of anion-mediated processes has made the development of improved methods for the selective recognition of anions one of the most relevant research topics today. The hydration sphere of anions plays an important role in the functions performed by anions by forming a variety of cluster complexes. Here we describe a supramolecular capsule that recognizes hydrated anion clusters. These clusters are most likely composed of three ions that form hydrated C3 symmetry complexes that are entrapped within the supramolecular capsule of the same symmetry. The capsule is made of self-assembled α,γ-cyclic peptide containing amino acid with by five-membered rings and equipped with a tris(triazolylethyl)amine cap. To recognise the hydrated anion clusters, the hexapeptide capsule must disassemble to entrap them between its two subunits.
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Affiliation(s)
- Victoria López-Corbalán
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS) and Organic Chemistry Department, Universidade de Santiago de Compostela, Santiago de Compostela, Spain
| | - Alberto Fuertes
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS) and Organic Chemistry Department, Universidade de Santiago de Compostela, Santiago de Compostela, Spain
| | - Antonio L Llamas-Saiz
- Unidad de Rayos X; Área de infraestructuras de Investigación, RIAIDT Edificio CACTUS, Universidade de Santiago de Compostela, 15782, Santiago de Compostela, Spain
| | - Manuel Amorín
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS) and Organic Chemistry Department, Universidade de Santiago de Compostela, Santiago de Compostela, Spain
| | - Juan R Granja
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS) and Organic Chemistry Department, Universidade de Santiago de Compostela, Santiago de Compostela, Spain.
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2
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Rather IA, Ahmad M, Talukdar P, Ali R. Probing and evaluating transmembrane chloride ion transport in double walled trifluorophenyl/phthalimide extended calix[4]pyrrole-based supramolecular receptors. J Mater Chem B 2024; 12:5950-5956. [PMID: 38804847 DOI: 10.1039/d3tb02880a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/29/2024]
Abstract
Therapeutic applications have sparked increased interest in the use of synthetic anion receptors for ion transport across lipid membranes. In this context, the construction of synthetic transmembrane transporters for the physiologically important chloride ion is currently of enormous interest. As a result, considerable effort is being devoted to the design and synthesis of artificial transmembrane chloride ion transporters. However, only inadequate progress has been made in developing macrocyclic chloride ion transporters using the fundamental principles of supramolecular chemistry, and hence this field entails fostering investigations. In this investigation, the synthesis of two new double walled trifluorophenyl/phthalimide extended calix[4]pyrrole (C4P) receptors (3 and 7) has been successfully reported. 1H-NMR titration and HRMS studies confirmed the 1 : 1 binding stoichiometry of the chloride ion with these receptors in the solution phase (only receptor 3b was studied by 1H-NMR). Regarding ion transport of 3b and 7, when studied in the HPTS-based vesicular system, 3b showed better activity with an EC50 value of 0.39 μM. The detailed ion transport studies on 3b have revealed that ion transport occurs through the Cl-/NO3- antiport mode.
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Affiliation(s)
- Ishfaq Ahmad Rather
- Organic and Supramolecular Functional Materials Research Laboratory, Department of Chemistry, Jamia Millia Islamia, Jamia Nagar, Okhla, New Delhi 110025, India.
| | - Manzoor Ahmad
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Pune 411008, Maharashtra, India.
| | - Pinaki Talukdar
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Pune 411008, Maharashtra, India.
| | - Rashid Ali
- Organic and Supramolecular Functional Materials Research Laboratory, Department of Chemistry, Jamia Millia Islamia, Jamia Nagar, Okhla, New Delhi 110025, India.
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3
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Jurek P, Szymański MP, Szumna A. Remote control of anion binding by CH-based receptors. Chem Commun (Camb) 2024; 60:3417-3420. [PMID: 38441137 DOI: 10.1039/d3cc06038a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/22/2024]
Abstract
We show that the substitution of tetra(benzimidazole)resorcin[4]arenes with electron withdrawing groups on the upper rim enhances anion binding at the opposite edge by more than three orders of magnitude. Moreover, selective anion binding at either the OH/NH or CH binding sites is demonstrated.
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Affiliation(s)
- Paulina Jurek
- Institute of Organic Chemistry Polish Academy of Sciences, Kasprzaka 44/52, Warsaw 01-224, Poland.
| | - Marek P Szymański
- Institute of Organic Chemistry Polish Academy of Sciences, Kasprzaka 44/52, Warsaw 01-224, Poland.
| | - Agnieszka Szumna
- Institute of Organic Chemistry Polish Academy of Sciences, Kasprzaka 44/52, Warsaw 01-224, Poland.
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4
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Wu B, Li ZW, Lin F, Tang R, Zhang W, Liu H, Ouyang G, Tan Y. The paradigm for exceptional iodine capture by nonporous amorphous electron-deficient cyclophanes. JOURNAL OF HAZARDOUS MATERIALS 2024; 465:133449. [PMID: 38218036 DOI: 10.1016/j.jhazmat.2024.133449] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Revised: 12/23/2023] [Accepted: 01/03/2024] [Indexed: 01/15/2024]
Abstract
Nuclear power emerges as a beacon of hope in tackling the energy crisis. However, the emission of radioactive iodine originating from nuclear waste and accidents poses a serious danger to nature and human well-being. Therefore, it becomes imperative to urgently develop suitable adsorbents capable of iodine capture and long-term storage. It's generally recognized that achieving high iodine capture efficiency necessitates the presence of electron-rich pores/cavities that facilitate charge-transfer (CT) interactions, as well as effective sorption sites capable of engaging in lone pair interactions with iodine. In this study, an unprecedented iodine capture paradigm by nonporous amorphous electron-deficient tetracationic cycloalkanes in vapor and aqueous solutions is revealed, overturning preconceived notions of iodine trapping materials. A newly reported tetracationic cyclophane, BPy-Box4+, exhibited an exceptional iodine vapor sorption capacity of 3.99 g g-1, remarkable iodine removal efficiency in aqueous media, and outstanding reusability. The iodine capture mechanism is unambiguously elucidated by theoretical calculations and the single-crystal structures of cyclophanes with a gradual increase in iodine content, underlining the vital role of host-guest (1:1 or 1:2) interactions for the enhanced iodine capture. The current study demonstrates a new paradigm for enhanced iodine capture by nonporous amorphous electron-deficient cyclophanes through host-guest complexation.
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Affiliation(s)
- Baoqi Wu
- School of Chemical Engineering and Technology, Sun Yat-Sen University, Zhuhai 519082, China
| | - Zhi-Wei Li
- School of Chemistry, Sun Yat-sen University, Guangzhou 510006, China
| | - Feng Lin
- School of Chemical Engineering and Technology, Sun Yat-Sen University, Zhuhai 519082, China
| | - Rongzhi Tang
- School of Energy and Environment, City University of Hong Kong, Kowloon 999077, Hong Kong, China; Shenzhen Research Institute, City University of Hong Kong, Shenzhen 518057, China.
| | - Wanqing Zhang
- School of Chemical Engineering and Technology, Sun Yat-Sen University, Zhuhai 519082, China
| | - Hongwei Liu
- School of Chemical Engineering and Technology, Sun Yat-Sen University, Zhuhai 519082, China
| | - Gangfeng Ouyang
- School of Chemical Engineering and Technology, Sun Yat-Sen University, Zhuhai 519082, China; School of Chemistry, Sun Yat-sen University, Guangzhou 510006, China
| | - Yu Tan
- School of Chemical Engineering and Technology, Sun Yat-Sen University, Zhuhai 519082, China.
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5
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Das S, Karn R, Kumar M, Srimayee S, Manna D. A chloride-responsive molecular switch: driving ion transport and empowering antibacterial properties. Org Biomol Chem 2023; 22:114-119. [PMID: 38050426 DOI: 10.1039/d3ob01826a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/06/2023]
Abstract
A molecular switch was developed to recognize and transport Cl- across lipid bilayers. The XRD-crystal structure and NOESY NMR spectra of a potent 4-aminoquinazoline analogue confirmed Cl--induced conformation changes. Systematic biophysical studies revealed that the quinazoline moiety forms cooperative interactions of H+ and Cl- ions with the thiourea moiety, resulting in the transport of H+/Cl- across the membranes. A pH-dependent analysis revealed that the transport of Cl- by the potent compound increased in an acidic environment. The potent compound could also transport H+/Cl- across Gram-positive bacteria, leading to antibacterial activities.
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Affiliation(s)
- Sribash Das
- Department of Chemistry, Indian Institute of Technology Guwahati, Assam-781039, India.
| | - Rama Karn
- Centre for Environment, Indian Institute of Technology Guwahati, Assam-781039, India
| | - Mohit Kumar
- Department of Chemistry, Indian Institute of Technology Guwahati, Assam-781039, India.
| | - Soumya Srimayee
- Department of Chemistry, Indian Institute of Technology Guwahati, Assam-781039, India.
| | - Debasis Manna
- Department of Chemistry, Indian Institute of Technology Guwahati, Assam-781039, India.
- Centre for Environment, Indian Institute of Technology Guwahati, Assam-781039, India
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Boje D, Sahoo SK, Atta AK. Sugar-based carboxamidoquinoline conjugate for sensing Cu 2+ and Au 3+ ions in water through different binding modes and real application. Anal Chim Acta 2023; 1277:341539. [PMID: 37604604 DOI: 10.1016/j.aca.2023.341539] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Revised: 05/04/2023] [Accepted: 06/16/2023] [Indexed: 08/23/2023]
Abstract
A simple water-soluble carboxamidoquinoline derivative of glucofuranose 1 exhibited reversible selectivity toward Cu2+ and Au3+ ions in different binding modes. Sensor 1 is an example of a dual sensor for identifying copper and gold ions in the water medium. Sensor 1 exhibited excellent selection ability and sensitivity for Cu2+ and Au3+ ions rather than several metal ions and anions with a wide pH range (5-10). The association constants for both ions were determined to be 3.58 × 104 M-1 and 1.84 × 104 M-1, respectively. The 1:1 binding chemistry of the complexes was verified from the Job method and again validated through mass spectra. Sensor 1 can detect Cu2+ and Au3+ ions at very low concentrations, such as 0.014 μM for Cu2+ and 0.058 μM for Au3+. The different sensing strategies of sensor 1 towards Cu2+ and Au3+ were manifested from the photophysical properties of sensor 2 with metal ions, FT-IR spectra, and theoretical (DFT) observations. The useful relevance of the sensor for Cu2+ and Au3+ ions was tested in different water samples.
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Affiliation(s)
- Domngam Boje
- Department of Basic & Applied Science, National Institute of Technology, Arunachal Pradesh, Jote, 791113, India
| | - Suban K Sahoo
- Department of Applied Chemistry, Sardar Vallabhbhai National Institute of Technology, Surat, Gujarat, 395007, India
| | - Ananta Kumar Atta
- Department of Basic & Applied Science, National Institute of Technology, Arunachal Pradesh, Jote, 791113, India.
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7
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Yang Z, Zhang W, Liu X, Zhao S, Yang Z, Jia X. Chloride Salt of Oligourea Ligand: Synthesis, Crystal Structure, Thermal Analyses, and Chloride Anion Binding Properties. INORG CHEM COMMUN 2023. [DOI: 10.1016/j.inoche.2023.110568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
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Mondal A, Barik GK, Sarkar S, Mondal D, Ahmad M, Vijayakanth T, Mondal J, Santra MK, Talukdar P. Nontoxic Artificial Chloride Channel Formation in Epithelial Cells by Isophthalic Acid-Based Small Molecules. Chemistry 2023; 29:e202202887. [PMID: 36399427 DOI: 10.1002/chem.202202887] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Revised: 11/18/2022] [Accepted: 11/18/2022] [Indexed: 11/19/2022]
Abstract
Artificial channels capable of facilitating the transport of Cl- ions across cell membranes while being nontoxic to the cells are rare. Such synthetic ion channels can mimic the functions of membrane transport proteins and, therefore, have the potential to treat channelopathies by replacing defective ion channels. Here we report isophthalic acid-based structurally simple molecules 1 a and 2 a, which self-assemble to render supramolecular nanochannels that allow selective transport of Cl- ions. As evident from the single-crystal X-ray diffraction analysis, the self-assembly is governed by intermolecular hydrogen bonding and π-π stacking interactions. The MD simulation studies for both 1 a and 2 a confirmed the formation of stable Cl- channel assembly in the lipid membrane and Cl- transport through them. The MQAE assay showed the efficacy of the compounds in delivering Cl- ions into cells, and the MTT assays proved that the compounds are nontoxic to cells even at a concentration of 100 μM.
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Affiliation(s)
- Abhishek Mondal
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, Pune, 411008, Maharashtra, India
| | | | - Susmita Sarkar
- Center for Interdisciplinary Sciences, Tata Institute of Fundamental Research, Hyderabad, 500046, Telangana, India
| | - Debashis Mondal
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, Pune, 411008, Maharashtra, India
| | - Manzoor Ahmad
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, Pune, 411008, Maharashtra, India
| | - Thangavel Vijayakanth
- The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, 6997801, Israel
| | - Jagannath Mondal
- Center for Interdisciplinary Sciences, Tata Institute of Fundamental Research, Hyderabad, 500046, Telangana, India
| | | | - Pinaki Talukdar
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, Pune, 411008, Maharashtra, India
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9
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Mondal A, Ahmad M, Mondal D, Talukdar P. Progress and prospects toward supramolecular bioactive ion transporters. Chem Commun (Camb) 2023; 59:1917-1938. [PMID: 36691926 DOI: 10.1039/d2cc06761g] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
The majority of cellular physiological processes depend on natural ion channels, which are pore-forming membrane-embedded proteins that let ions flow across the cell membranes selectively. This selective movement of ions across the membranes balances the osmolality within and outside the cell. However, mutations in the genes that encode essential membrane transport proteins or structural reorganisation of these proteins can cause life-threatening diseases like cystic fibrosis. Artificial ion transport systems have opened up a way to replace dysfunctional natural ion channels to cure such diseases through channel replacement therapy. Moreover, recent research has also demonstrated the ability of these systems to kill cancer cells, reigniting interest in the field among scientists. Our contributions to the recent progress in the design and development of artificial chloride ion transporters and their effect on biological systems have been discussed in this review. This review would provide current vistas and future directions toward the development of novel ion transporters with improved biocompatibility and desired anti-cancer properties. Additionally, it strongly emphasises stimuli-responsive ion transport systems, which are crucial for obtaining target-specificity and may speed up the application of these systems in clinical therapeutics.
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Affiliation(s)
- Abhishek Mondal
- Chemistry Department, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, Pune 411008, Maharashtra, India.
| | - Manzoor Ahmad
- Chemistry Department, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, Pune 411008, Maharashtra, India. .,Chemistry Research Laboratory, Mansfield Road, Oxford, OX1 3TA, UK
| | - Debashis Mondal
- Chemistry Department, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, Pune 411008, Maharashtra, India. .,Faculty of Chemistry, Biological and Chemical Research Centre, University of Warsaw, Zwirkii Wigury 101, Warsaw 02-089, Poland
| | - Pinaki Talukdar
- Chemistry Department, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, Pune 411008, Maharashtra, India.
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10
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Docker A, Johnson TG, Kuhn H, Zhang Z, Langton MJ. Multistate Redox-Switchable Ion Transport Using Chalcogen-Bonding Anionophores. J Am Chem Soc 2023; 145:2661-2668. [PMID: 36652378 PMCID: PMC9896566 DOI: 10.1021/jacs.2c12892] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Synthetic supramolecular transmembrane anionophores have emerged as promising anticancer chemotherapeutics. However, key to their targeted application is achieving spatiotemporally controlled activity. Herein, we report a series of chalcogen-bonding diaryl tellurium-based transporters in which their anion binding potency and anionophoric activity are controlled through reversible redox cycling between Te oxidation states. This unprecedented in situ reversible multistate switching allows for switching between ON and OFF anion transport and is crucially achieved with biomimetic chemical redox couples.
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Abstract
Considering the wide interest in (benz)imidazolium-based drugs, we here report our study on a benzimidazolium-based organic cage as potential antimicrobial and antifungal agent. Cytotoxicity studies on a human derived cell line, SH-SY5Y, showed that the cage is not cytotoxic at all at the investigated concentrations. Anion binding studies demonstrated that the cage can bind anions (chloride and nitrate, in particular) both in organic solvent and 20%v D2O/CD3CN mixture. The cage was also tested as anionophore, showing a weak but measurable transport of chloride and nitrate across LUVs vesicles. Nonetheless, the compounds have antimicrobial activity towards Staphylococcus aureus (Gram-positive bacteria). This is probably the first organic cage studied as anionophore and antimicrobial agent.
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Irie Y, Chen H, Fuse H, Mitsunuma H, Kanai M. Linear‐Selective Allylation of Aldehydes with Simple Alkenes Mediated by Quadruple Hybrid Catalysis. Adv Synth Catal 2022. [DOI: 10.1002/adsc.202200704] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Yu Irie
- The University of Tokyo JAPAN
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Malla JA, Upadhyay A, Ghosh P, Mondal D, Mondal A, Sharma S, Talukdar P. Chloride Transport across Liposomes and Cells by Nontoxic 3-(1 H-1,2,3-Triazol-1-yl)benzamides. Org Lett 2022; 24:4124-4128. [PMID: 35657329 DOI: 10.1021/acs.orglett.2c01219] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Synthetic anion transmembrane transporters are adding new aspirations for treating channelopathies by replacing defective ion channels. The availability of such suitable candidates is still infrequent due to the associated toxicity. Here, we report 3-(1H-1,2,3-triazol-1-yl)benzamides as transmembrane anion carriers, nontoxic to cells. The selective and electrogenic chloride transport activity was established by fluorescence and ion selective electrode-based assays. MQAE assay confirmed the chloride uptake into the cells by the nontoxic compounds.
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Affiliation(s)
- Javid Ahmad Malla
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, 411008 Pune, Maharashtra, India
| | - Avisikta Upadhyay
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, 411008 Pune, Maharashtra, India
| | - Pulak Ghosh
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, 411008 Pune, Maharashtra, India
| | - Debashis Mondal
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, 411008 Pune, Maharashtra, India
| | - Abhishek Mondal
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, 411008 Pune, Maharashtra, India
| | - Shilpy Sharma
- Department of Biotechnology, Savitribai Phule Pune University, 411007 Pune, Maharashtra, India
| | - Pinaki Talukdar
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pashan, 411008 Pune, Maharashtra, India
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