Influence of Solvation and Dynamics on the Mechanism and Kinetics of Nucleophilic Aromatic Substitution Reactions in Liquid Ammonia

Shapeshifting Nucleophiles HO-(NH3)n React with Methyl Chloride

The microsolvated anions HO-(NH3)n were found to induce new nucleophile NH2-(H2O)(NH3)n-1 via intramolecular proton transfer. Hence, the ion-molecule nucleophilic substitution (SN2) reaction between CH3Cl and these shapeshifting nucleophiles lead to both the HO- path and NH2- path, meaning that the respective attacking nucleophile is HO- or NH2-. The CCSD(T) level of calculation was performed to characterize the potential energy surfaces. Calculations indicate that the HO- species are lower in energy than the NH2- species, and the SN2 reaction barriers are lower for the HO- path than the NH2--path. Incremental solvation increases the barrier for both paths. Comparison between HO-(NH3)n and HOO-(NH3)n confirmed the existence of an α-effect under microsolvated conditions. Comparison between HO-(NH3)n and HO-(H2O)n indicated that the more polarized H2O stabilizes the nucleophiles more than NH3, and thus, the hydrated systems have higher SN2 reaction barriers. The aforementioned barrier changes can be explained by the differential stabilization of the nucleophile and HOMO levels upon solvation, thus affecting the HOMO-LUMO interaction between the nucleophile and substrate. For the same kind of nucleophilic attacking atom, O or N, the reaction barrier has a good linear correlation with the HOMO level of the nucleophiles. Hence, the HOMO level or the binding energy of microsolvated nucleophiles is a good indicator to evaluate the order of barrier heights. This work expands our understanding of the microsolvation effect on prototype SN2 reactions beyond the water solvent.

Nucleophilic substitution reactions of microsolvated hydroperoxide anion HOO-(NH3)n with methyl chloride and comparison between ammonia and water as the solvent

Similar to microhydrated hydroperoxide anion HOO^-(H₂O)_n, the HOO^-(NH₃)_n=1-3 anion can induce alternative nucleophiles by proton transfer (PT) from the solvent molecule NH₃. The PT-induced species NH₂^-(H₂O₂)(NH₃)_n-1 is higher in energy than HOO^-(NH₃)_n, obeying the proton affinity (PA) prediction that HOO^- has a higher PA than NH₂^-. The potential energy profile of HOO^-(NH₃)_n reacting with CH₃Cl shows that the transition states of the traditional HOO^--S_N2 pathway are ∼10 kcal mol^-1 lower in energy than those of the PT-induced NH₂^--S_N2 pathway, indicating the latter path is unlikely to compete. The differential solvation energy for reactants and transition states with incremental solvation increases the barrier height of both HOO^--/NH₂^--S_N2 pathways and makes the transition structures more product-like. For HOO^-(sol)_n + CH₃Cl → CH₃OOH + Cl^-(sol)_n reactions, the barrier heights for sol = H₂O are higher than those for sol = NH₃, because H₂O is more polar than NH₃, and the electrostatic interaction is strengthened, hence H₂O molecules stabilize the microsolvated nucleophiles more. In addition, because the H₂O molecule is a better proton donor than the NH₃ molecule, the PT-induced HO^-S_N2 pathway is more likely to compete with the HOO^-S_N2 pathway. The HOMO level of nucleophiles, which negatively correlates with the S_N2 barrier heights, is found to be a good descriptor to predict the S_N2 barrier height of a microsolvated system with the same attacking nucleophile. This work adds to our understanding of the differential solvent effect on the prototype ion-molecule S_N2 reactions.

Connecting Gas-Phase Computational Chemistry to Condensed Phase Kinetic Modeling: The State-of-the-Art

In recent decades, quantum chemical calculations (QCC) have increased in accuracy, not only providing the ranking of chemical reactivities and energy barriers (e.g., for optimal selectivities) but also delivering more reliable equilibrium and (intrinsic/chemical) rate coefficients. This increased reliability of kinetic parameters is relevant to support the predictive character of kinetic modeling studies that are addressing actual concentration changes during chemical processes, taking into account competitive reactions and mixing heterogeneities. In the present contribution, guidelines are formulated on how to bridge the fields of computational chemistry and chemical kinetics. It is explained how condensed phase systems can be described based on conventional gas phase computational chemistry calculations. Case studies are included on polymerization kinetics, considering free and controlled radical polymerization, ionic polymerization, and polymer degradation. It is also illustrated how QCC can be directly linked to material properties.

Ab Initio Molecular Dynamics Simulations of the SN1/SN2 Mechanistic Continuum in Glycosylation Reactions

We report a computational approach to evaluate the reaction mechanisms of glycosylation using ab initio molecular dynamics (AIMD) simulations in explicit solvent. The reaction pathways are simulated via free energy calculations based on metadynamics and trajectory simulations using Born-Oppenheimer molecular dynamics. We applied this approach to investigate the mechanisms of the glycosylation of glucosyl α-trichloroacetimidate with three acceptors (EtOH, i-PrOH, and t-BuOH) in three solvents (ACN, DCM, and MTBE). The reactants and the solvents are treated explicitly using density functional theory. We show that the profile of the free energy surface, the synchronicity of the transition state structure, and the time gap between leaving group dissociation and nucleophile association can be used as three complementary indicators to describe the glycosylation mechanism within the SN1/SN2 continuum for a given reaction. This approach provides a reliable means to rationalize and predict reaction mechanisms and to estimate lifetimes of oxocarbenium intermediates and their dependence on the glycosyl donor, acceptor, and solvent environment.

Concerted Nucleophilic Aromatic Substitution Reactions

Recent developments in experimental and computational chemistry have identified a rapidly growing class of nucleophilic aromatic substitutions that proceed by concerted (cSN Ar) rather than classical, two-step, SN Ar mechanisms. Whereas traditional SN Ar reactions require substantial activation of the aromatic ring by electron-withdrawing substituents, such activating groups are not mandatory in the concerted pathways.

Green reusable Pd nanoparticles embedded in phytochemical resins for mild hydrogenations of nitroarenes

Reusable biosourced Pd NPs are prepared and used under environment-friendly conditions for mild and chemospecific hydrogenations of nitroarenes.

Solvent and Autocatalytic Effects on the Stabilisation of the σ-Complex during Electrophilic Aromatic Chlorination

The solvent and autocatalytic effects of the electrophilic aromatic chlorination of benzene are studied using a combined approach of static calculations and ab initio metadynamics simulations. Different possible reaction pathways are investigated and the influence of the solvents (CCl₄ , acetonitrile and acetic acid) is thoroughly assessed. Our results show that the stability and lifetime of a charged σ-complex is increased by electrostatic stabilisation effects of the environment, which can originate from catalytic HCl, solvating effects of polar solvents (acetonitrile), or specific hydrogen bonding interactions with the solvent (acetic acid). Metadynamics simulations reveal a new chlorine addition mechanism explaining the autocatalytic effects of the reaction. The strength of combining static calculations and metadynamics simulations is highlighted, which provide complementary insight into chemical reactions in solvent.

Medium effect (water versus MeCN) on reactivity and reaction pathways for the SNAr reaction of 1-aryloxy-2,4-dinitrobenzenes with cyclic secondary amines

A kinetic study on SNAr reactions of 1-aryloxy-2,4-dinitrobenzenes (1a–1h) with a series of cyclic secondary amines in 80 mol% water – 20 mol% DMSO at 25.0 ± 0.1 °C is reported. The plots of kobsd versus amine concentration curve upward except for the reactions of substrates possessing a strong electron-withdrawing group in the leaving aryloxide with strongly basic piperidine. The curved plots indicate that the reactions proceed through both uncatalytic and catalytic routes. Linear Brønsted-type plots have been obtained for the uncatalyzed and catalyzed reactions of 1-(4-nitrophenoxy)-2,4-dinitrobenzene (1a) with βnuc = 0.84 and 0.78, respectively. The Yukawa–Tsuno plot for the uncatalyzed reactions of 1a–1h with piperidine results in an excellent linear correlation with ρ = 1.66 and r = 0.31. In contrast, rate constants for catalyzed reactions are independent of the electronic nature of the substituent in the leaving group. The current SNAr reactions have been proposed to proceed via a zwitterionic intermediate (MC±) that partitions to products through uncatalytic and catalytic routes. The catalyzed reaction from MC± has been concluded to proceed through a concerted mechanism with a six-membered cyclic transition state (TScycl) rather than via a stepwise pathway with a discrete anionic intermediate (MC−), the traditionally accepted mechanism. Medium effects on the reactivity and reaction mechanism are discussed. Particularly, hydrogen bonding of the amines to water precludes formation of kinetically significant dimers found in some aprotic solvents; no explicit role for water in the catalytic transition state is required or proposed. The specific stabilization of the leaving aryloxides substituted with strong electron-withdrawing groups accounts for the lack of the catalytic pathway in these systems (1a–1c) with piperidine nucleophile.

Substitution of a Fluorine Atom in Perfluorobenzonitrile by a Lithiated Nitronyl Nitroxide

A 4,4,5,5-tetramethyl-4,5-dihydro-1H-imidazole-3-oxide-1-oxyl (1) lithium derivative was found to react with perfluorobenzonitrile (2) substituting its para-fluorine atom to form 2-(4-cyanotetrafluorophenyl)-4,4,5,5-tetramethyl-4,5-dihydro-1H-imidazol-3-oxide-1-oxyl (3), a new nitronyl nitroxide containing a multifunctional framework of strong electron-withdrawing nature. This result shows the possibility of obtaining multifunctional nitronyl nitroxides via the interaction of paramagnetic lithium derivatives as C-nucleophiles with polyfluoroarenes activated for nucleophilic substitution. The reaction regioselectivity is supported by the data of quantum-chemical calculations, which also show that the reaction follows a concerted pathway without formation of an intermediate. Reduction of nitronyl nitroxide 3 in system NaNO₂-AcOH yielded corresponding iminonitroxide 4. Characterization of persistent radicals 3 and 4 obtained by the S_N^F synthetic strategy includes X-ray crystal structures, electron spin resonance data, and static magnetic-susceptibility measurements. X-ray diffraction analysis of both nitronyl nitroxide and iminonitroxide revealed a complete match of the parameters of their crystal lattices.

Aromatic sulfonation with sulfur trioxide: mechanism and kinetic model

Electrophilic aromatic sulfonation of benzene with sulfur trioxide is studied with ab initio molecular dynamics simulations in gas phase, and in explicit noncomplexing (CCl3F) and complexing (CH3NO2) solvent models. We investigate different possible reaction pathways, the number of SO3 molecules participating in the reaction, and the influence of the solvent. Our simulations confirm the existence of a low-energy concerted pathway with formation of a cyclic transition state with two SO3 molecules. Based on the simulation results, we propose a sequence of elementary reaction steps and a kinetic model compatible with experimental data. Furthermore, a new alternative reaction pathway is proposed in complexing solvent, involving two SO3 and one CH3NO2.

Acidity Constant (pKa ) Calculation of Large Solvated Dye Molecules: Evaluation of Two Advanced Molecular Dynamics Methods

pH‐Sensitive dyes are increasingly applied on polymer substrates for the creation of novel sensor materials. Recently, these dye molecules were modified to form a covalent bond with the polymer host. This had a large influence on the pH‐sensitive properties, in particular on the acidity constant (pK_a). Obtaining molecular control over the factors that influence the pK_a value is mandatory for the future intelligent design of sensor materials. Herein, we show that advanced molecular dynamics (MD) methods have reached the level at which the pK_a values of large solvated dye molecules can be predicted with high accuracy. Two MD methods were used in this work: steered or restrained MD and the insertion/deletion scheme. Both were first calibrated on a set of phenol derivatives and afterwards applied to the dye molecule bromothymol blue. Excellent agreement with experimental values was obtained, which opens perspectives for using these methods for designing dye molecules.