1
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Lee J, Coronado JN, Cho N, Lim J, Hosford BM, Seo S, Kim DS, Kofman C, Moore JS, Ellington AD, Anslyn EV, Jewett MC. Ribosome-mediated biosynthesis of pyridazinone oligomers in vitro. Nat Commun 2022; 13:6322. [PMID: 36280685 PMCID: PMC9592601 DOI: 10.1038/s41467-022-33701-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2022] [Accepted: 09/28/2022] [Indexed: 12/25/2022] Open
Abstract
The ribosome is a macromolecular machine that catalyzes the sequence-defined polymerization of L-α-amino acids into polypeptides. The catalysis of peptide bond formation between amino acid substrates is based on entropy trapping, wherein the adjacency of transfer RNA (tRNA)-coupled acyl bonds in the P-site and the α-amino groups in the A-site aligns the substrates for coupling. The plasticity of this catalytic mechanism has been observed in both remnants of the evolution of the genetic code and modern efforts to reprogram the genetic code (e.g., ribosomal incorporation of non-canonical amino acids, ribosomal ester formation). However, the limits of ribosome-mediated polymerization are underexplored. Here, rather than peptide bonds, we demonstrate ribosome-mediated polymerization of pyridazinone bonds via a cyclocondensation reaction between activated γ-keto and α-hydrazino ester monomers. In addition, we demonstrate the ribosome-catalyzed synthesis of peptide-hybrid oligomers composed of multiple sequence-defined alternating pyridazinone linkages. Our results highlight the plasticity of the ribosome's ancient bond-formation mechanism, expand the range of non-canonical polymeric backbones that can be synthesized by the ribosome, and open the door to new applications in synthetic biology.
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Affiliation(s)
- Joongoo Lee
- Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL, 60208, USA.
- Department of Chemical Engineering, Pohang University of Science and Technology (POSTECH), Pohang, 37673, Republic of Korea.
| | - Jaime N Coronado
- Department of Chemistry, University of Texas at Austin, Austin, TX, 78712, USA
| | - Namjin Cho
- Department of Chemical Engineering, Pohang University of Science and Technology (POSTECH), Pohang, 37673, Republic of Korea
| | - Jongdoo Lim
- Department of Chemistry, University of Texas at Austin, Austin, TX, 78712, USA
| | - Brandon M Hosford
- Department of Chemistry, University of Texas at Austin, Austin, TX, 78712, USA
| | - Sangwon Seo
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea
- Center for Catalytic Hydrocarbon Functionalizations, Institute for Basic Science (IBS), Daejeon, 34141, Republic of Korea
| | - Do Soon Kim
- Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL, 60208, USA
| | - Camila Kofman
- Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL, 60208, USA
| | - Jeffrey S Moore
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Andrew D Ellington
- Department of Chemistry and Biochemistry, Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX, 78712, USA
| | - Eric V Anslyn
- Department of Chemistry, University of Texas at Austin, Austin, TX, 78712, USA.
| | - Michael C Jewett
- Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL, 60208, USA.
- Interdisplinary Biological Sciences Graduate Program, Evanston, IL, 60208, USA.
- Chemistry of Life Processes Institute, Evanston, IL, 60208, USA.
- Robert H. Lurie Comprehensive Cancer Center, Evanston, IL, 60208, USA.
- Simpson Querrey Institute, Evanston, IL, 60208, USA.
- Center for Synthetic Biology, Northwestern University and Biological Engineering, 2145 Sheridan Road, Evanston, IL, 60208, USA.
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2
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Rathman BM, Del Valle JR. Late-Stage Sidechain-to-Backbone Macrocyclization of N-Amino Peptides. Org Lett 2022; 24:1536-1540. [PMID: 35157469 DOI: 10.1021/acs.orglett.2c00204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Cysteine-containing N-amino peptides undergo chemoselective reactions with haloaldehydes to afford ethylene-bridged cyclic peptides. This bis-alkylation strategy provides macrocycles harboring a novel covalent H-bond surrogate. Mimicry of a native sidechain-to-backbone (sb) H-bond is demonstrated in the context of a model loop-helix peptide. The described method is amenable to the synthesis of diverse ring sizes from crude unprotected linear substrates under aqueous conditions.
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Affiliation(s)
- Benjamin M Rathman
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Juan R Del Valle
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States
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3
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Rathman BM, Rowe JL, Del Valle JR. Synthesis and conformation of backbone N-aminated peptides. Methods Enzymol 2021; 656:271-294. [PMID: 34325790 DOI: 10.1016/bs.mie.2021.04.013] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The chemical modification of peptides is a promising approach for the design of protein-protein interaction inhibitors and peptide-based drug candidates. Among several peptidomimetic strategies, substitution of the amide backbone maintains side-chain functionality that may be important for engagement of biological targets. Backbone amide substitution has been largely limited to N-alkylation, which can promote cis amide geometry and disrupt important H-bonding interactions. In contrast, N-amination of peptides induces distinct backbone geometries and maintains H-bond donor capacity. In this chapter we discuss the conformational characteristics of designed N-amino peptides and present a detailed protocol for their synthesis on solid support. The described methods allow for backbone N-amino scanning of biologically active parent sequences.
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4
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Ravindra S, Irfana Jesin CP, Shabashini A, Nandi GC. Recent Advances in the Preparations and Synthetic Applications of Oxaziridines and Diaziridines. Adv Synth Catal 2021. [DOI: 10.1002/adsc.202001372] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Sundaresan Ravindra
- Department of Chemistry National Institute of Technology Tiruchirappalli 620015, Tamilnadu India
| | - C. P. Irfana Jesin
- Department of Chemistry National Institute of Technology Tiruchirappalli 620015, Tamilnadu India
| | - Arivalagan Shabashini
- Department of Chemistry National Institute of Technology Tiruchirappalli 620015, Tamilnadu India
| | - Ganesh Chandra Nandi
- Department of Chemistry National Institute of Technology Tiruchirappalli 620015, Tamilnadu India
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5
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Song F, Zhu S, Wang H, Chen G. Iridium-Catalyzed Intermolecular N—N Coupling for Hydrazide Synthesis Using N-Benzoyloxycarbamates as Acyl Nitrene Precursor. CHINESE J ORG CHEM 2021. [DOI: 10.6023/cjoc202105044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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6
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Dalabehera N, Meher S, Bhusana Palai B, Sharma NK. Instability of Amide Bond with Trifluoroacetic Acid (20%): Synthesis, Conformational Analysis, and Mechanistic Insights into Cleavable Amide Bond Comprising β-Troponylhydrazino Acid. ACS OMEGA 2020; 5:26141-26152. [PMID: 33073142 PMCID: PMC7557997 DOI: 10.1021/acsomega.0c03729] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/05/2020] [Accepted: 09/17/2020] [Indexed: 06/11/2023]
Abstract
The instability of an amide bond with dilute trifluoroacetic acid (TFA) is a rare chemical event. The native amide bonds are stable even in the neat TFA, which is one of the reagents that releases the peptides from the solid support in the solid-supported peptide synthesis method. In the repertoire of unnatural peptidomics, α-/β-hydrazino acids and their peptides are explored for the synthesis of N-amino peptide derivatives, and their amide bonds are stable in TFA (∼100%) as natural amide bonds. This report describes the synthesis of a β-hydrazino acid analogue as β-troponylhydrazino acid, containing a nonbenzenoid natural troponyl scaffold. The structural and conformational studies of their hybrid di-/tripeptides with the natural amino acid show that the 2-aminotroponyl residue is involved in hydrogen bonding. Surprisingly, the amide bond of β-troponylhydrazino peptides is cleavable with TFA (∼20%) through the formation of a new heterocyclic molecule N-troponylpyrazolidinone or troponylpyrazolidinone. Tropolone and related compounds are excellent biocompatible chromophores. Hence, β-troponylhydrazino acid could be employed for tuning the peptide structure and considered a promising chromophoric acid-sensitive protecting group of a free amine of amino acids/peptides. It could be applied for the estimation of the free amine group functionality by a UV-vis spectrophotometer.
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Affiliation(s)
- Nihar
Ranjan Dalabehera
- National
Institute of Science Education and Research (NISER)-Bhubaneswar, Jatni Campus, Jatni, Odisha 752050, India
- Homi
Bhabha National Institute (HBNI), HBNI-Mumbai, Mumbai 400 094, India
| | - Sagarika Meher
- National
Institute of Science Education and Research (NISER)-Bhubaneswar, Jatni Campus, Jatni, Odisha 752050, India
- Homi
Bhabha National Institute (HBNI), HBNI-Mumbai, Mumbai 400 094, India
| | - Bibhuti Bhusana Palai
- National
Institute of Science Education and Research (NISER)-Bhubaneswar, Jatni Campus, Jatni, Odisha 752050, India
- Homi
Bhabha National Institute (HBNI), HBNI-Mumbai, Mumbai 400 094, India
| | - Nagendra K. Sharma
- National
Institute of Science Education and Research (NISER)-Bhubaneswar, Jatni Campus, Jatni, Odisha 752050, India
- Homi
Bhabha National Institute (HBNI), HBNI-Mumbai, Mumbai 400 094, India
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7
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Rathman BM, Allen JL, Shaw LN, Del Valle JR. Synthesis and biological evaluation of backbone-aminated analogues of gramicidin S. Bioorg Med Chem Lett 2020; 30:127283. [PMID: 32527462 DOI: 10.1016/j.bmcl.2020.127283] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2020] [Revised: 05/18/2020] [Accepted: 05/20/2020] [Indexed: 01/26/2023]
Abstract
We report the parallel synthesis of gramicidin S derivatives featuring backbone N-amino substituents. Analogues were prepared by incorporation of N-amino dipeptide subunits on solid support. Nine backbone-aminated macrocycles were evaluated for growth inhibitory activity against ESKAPE pathogens and hemolytic activity against human red blood cells. Diamination of the Orn residues in the β-strand region of gramicidin S was found to enhance broad-spectrum antimicrobial activity without a corresponding increase in hemolytic activity.
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Affiliation(s)
- Benjamin M Rathman
- Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, IN 46556, United States
| | - Jessie L Allen
- Department of Cell Biology, Microbiology & Molecular Biology, University of South Florida, Tampa, FL 33620, United States
| | - Lindsey N Shaw
- Department of Cell Biology, Microbiology & Molecular Biology, University of South Florida, Tampa, FL 33620, United States
| | - Juan R Del Valle
- Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, IN 46556, United States.
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8
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Elbatrawi YM, Pedretty KP, Giddings N, Woodcock HL, Del Valle JR. δ-Azaproline and Its Oxidized Variants. J Org Chem 2020; 85:4207-4219. [DOI: 10.1021/acs.joc.9b03384] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Yassin M. Elbatrawi
- Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Kyle P. Pedretty
- Department of Chemistry, University of South Florida, Tampa, Florida 33620, United States
| | - Nicole Giddings
- Department of Chemistry, University of South Florida, Tampa, Florida 33620, United States
| | - H. Lee Woodcock
- Department of Chemistry, University of South Florida, Tampa, Florida 33620, United States
| | - Juan R. Del Valle
- Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States
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9
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Velázquez M, Alberca S, Iglesias-Sigüenza J, Fernández R, Lassaletta JM, Monge D. Catalytic enantioselective synthesis of α-aryl α-hydrazino esters and amides. Chem Commun (Camb) 2020; 56:5823-5826. [DOI: 10.1039/d0cc02478c] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Asymmetric 1,2-addition of aryl boronic acids to N-carbamoyl (Cbz and Fmoc) protected glyoxylate-derived hydrazones affords α-aryl α-hydrazino esters/amides, key building blocks en route to artificial peptides.
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Affiliation(s)
- Marta Velázquez
- Departamento de Química Orgánica
- Universidad de Sevilla and Centro de Innovación en Química Avanzada (ORFEO-CINQA)
- 41012 Sevilla
- Spain
| | - Saúl Alberca
- Departamento de Química Orgánica
- Universidad de Sevilla and Centro de Innovación en Química Avanzada (ORFEO-CINQA)
- 41012 Sevilla
- Spain
| | - Javier Iglesias-Sigüenza
- Departamento de Química Orgánica
- Universidad de Sevilla and Centro de Innovación en Química Avanzada (ORFEO-CINQA)
- 41012 Sevilla
- Spain
| | - Rosario Fernández
- Departamento de Química Orgánica
- Universidad de Sevilla and Centro de Innovación en Química Avanzada (ORFEO-CINQA)
- 41012 Sevilla
- Spain
| | - José M. Lassaletta
- Instituto de Investigaciones Químicas (CSIC-US) and Centro de Innovación en Química Avanzada (ORFEO-CINQA)
- 41092 Sevilla
- Spain
| | - David Monge
- Departamento de Química Orgánica
- Universidad de Sevilla and Centro de Innovación en Química Avanzada (ORFEO-CINQA)
- 41012 Sevilla
- Spain
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10
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Tillett KC, Del Valle JR. N-Amino peptide scanning reveals inhibitors of Aβ42aggregation. RSC Adv 2020; 10:14331-14336. [PMID: 35498502 PMCID: PMC9051937 DOI: 10.1039/d0ra02009e] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Accepted: 03/21/2020] [Indexed: 11/21/2022] Open
Abstract
The aggregation of amyloids into toxic oligomers is believed to be a key pathogenic event in the onset of Alzheimer's disease. Peptidomimetic modulators capable of destabilizing the propagation of an extended network of β-sheet fibrils represent a potential intervention strategy. Modifications to amyloid-beta (Aβ) peptides derived from the core domain have afforded inhibitors capable of both antagonizing aggregation and reducing amyloid toxicity. Previous work from our laboratory has shown that peptide backbone amination stabilizes β-sheet-like conformations and precludes β-strand aggregation. Here, we report the synthesis of N-aminated hexapeptides capable of inhibiting the fibrillization of full-length Aβ42. A key feature of our design is N-amino substituents at alternating backbone amides within the aggregation-prone Aβ16–21 sequence. This strategy allows for maintenance of an intact hydrogen-bonding backbone edge as well as side chain moieties important for favorable hydrophobic interactions. An N-amino scan of Aβ16–21 resulted in the identification of peptidomimetics that block Aβ42 fibrilization in several biophysical assays. Structure-based design of backbone-aminated peptides affords novel β-strand mimics that inhibit amyloid-beta fibrillogenesis.![]()
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Affiliation(s)
| | - Juan R. Del Valle
- Department of Chemistry & Biochemistry
- University of Notre Dame
- Notre Dame
- USA
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11
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Northrup JD, Mach RH, Sellmyer MA. Radiochemical Approaches to Imaging Bacterial Infections: Intracellular versus Extracellular Targets. Int J Mol Sci 2019; 20:E5808. [PMID: 31752318 PMCID: PMC6888724 DOI: 10.3390/ijms20225808] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2019] [Revised: 11/04/2019] [Accepted: 11/12/2019] [Indexed: 02/03/2023] Open
Abstract
The discovery of penicillin began the age of antibiotics, which was a turning point in human healthcare. However, to this day, microbial infections are still a concern throughout the world, and the rise of multidrug-resistant organisms is an increasing challenge. To combat this threat, diagnostic imaging tools could be used to verify the causative organism and curb inappropriate use of antimicrobial drugs. Nuclear imaging offers the sensitivity needed to detect small numbers of bacteria in situ. Among nuclear imaging tools, radiolabeled antibiotics traditionally have lacked the sensitivity or specificity necessary to diagnose bacterial infections accurately. One reason for the lack of success is that the antibiotics were often chelated to a radiometal. This was done without addressing the ramifications of how the radiolabeling would impact probe entry to the bacterial cell, or the mechanism of binding to an intracellular target. In this review, we approach bacterial infection imaging through the lens of bacterial specific molecular targets, their intracellular or extracellular location, and discuss radiochemistry strategies to guide future probe development.
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Affiliation(s)
- Justin D. Northrup
- Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104, USA; (J.D.N.); (R.H.M.)
- Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA 19104, USA
- Institute for Translational Medicine and Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Robert H. Mach
- Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104, USA; (J.D.N.); (R.H.M.)
| | - Mark A. Sellmyer
- Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104, USA; (J.D.N.); (R.H.M.)
- Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA 19104, USA
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12
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Howard EH, Cain CF, Kang C, Del Valle JR. Synthesis of Enantiopure ε-Oxapipecolic Acid. J Org Chem 2019; 85:1680-1686. [DOI: 10.1021/acs.joc.9b02382] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Evan H. Howard
- Department of Chemistry, University of South Florida, Tampa, Florida 33620, United States
| | - Christopher F. Cain
- Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Changwon Kang
- Department of Chemistry, University of South Florida, Tampa, Florida 33620, United States
| | - Juan R. Del Valle
- Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States
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13
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Stuhr-Hansen N, Vagianou CD, Blixt O. Clustering of Giant Unilamellar Vesicles Promoted by Covalent and Noncovalent Bonding of Functional Groups at Membrane-Embedded Peptides. Bioconjug Chem 2019; 30:2156-2164. [DOI: 10.1021/acs.bioconjchem.9b00394] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Nicolai Stuhr-Hansen
- Department of Chemistry, Chemical Biology, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg C, Denmark
| | - Charikleia-Despoina Vagianou
- Department of Chemistry, Chemical Biology, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg C, Denmark
| | - Ola Blixt
- Department of Chemistry, Chemical Biology, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg C, Denmark
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14
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Ghosh A, Chawla V, Banerjee P. An Assessment of Electrophilic N-Transfer of Oxaziridine with Different 2-, 3-, and 4-Carbon Donor-Acceptor Substrates to Furnish Diverse N-Containing Heterocycles in a Single Step. European J Org Chem 2019. [DOI: 10.1002/ejoc.201900589] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Asit Ghosh
- Department of Chemistry; Indian Institute of Technology; Nangal Road Rupnagar, Punjab Pin 140001 India
| | - Vatan Chawla
- Department of Chemistry; Indian Institute of Technology; Nangal Road Rupnagar, Punjab Pin 140001 India
| | - Prabal Banerjee
- Department of Chemistry; Indian Institute of Technology; Nangal Road Rupnagar, Punjab Pin 140001 India
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15
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Asahara H, Kikuchi S, Unno Y, Yokoyama S, Yoshioka K, Tani S, Umezu K, Nishiwaki N. A Facile Synthesis of Oxiranes Possessing Three or Four Carbonyl Groups. CURR ORG CHEM 2019. [DOI: 10.2174/1385272823666190112103813] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Tri-carbonylated oxiranes were efficiently synthesized by condensing a vicinal
tricarbonyl compound with α-bromoketones in the presence of a base. This protocol was
applicable to α–bromo-β-keto esters to create tetra-carbonylated oxiranes, from which trifunctionalized
bromoalkene was competitively formed. The ratio of these compounds was
influenced by the solvent and reaction temperature.
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Affiliation(s)
- Haruyasu Asahara
- School of Environmental Science and Engineering, Kochi University of Technology, Kami, Kochi 782-8502, Japan
| | - Shuhei Kikuchi
- School of Environmental Science and Engineering, Kochi University of Technology, Kami, Kochi 782-8502, Japan
| | - Yuto Unno
- School of Environmental Science and Engineering, Kochi University of Technology, Kami, Kochi 782-8502, Japan
| | - Soichi Yokoyama
- School of Environmental Science and Engineering, Kochi University of Technology, Kami, Kochi 782-8502, Japan
| | - Kotaro Yoshioka
- Kumiai Chemical Industry Co., Ltd. Fujikawa-cho, Ihara-gun, Shizuoka 421-3306, Japan
| | - Shinki Tani
- Kumiai Chemical Industry Co., Ltd. Fujikawa-cho, Ihara-gun, Shizuoka 421-3306, Japan
| | - Kazuto Umezu
- Kumiai Chemical Industry Co., Ltd. Fujikawa-cho, Ihara-gun, Shizuoka 421-3306, Japan
| | - Nagatoshi Nishiwaki
- School of Environmental Science and Engineering, Kochi University of Technology, Kami, Kochi 782-8502, Japan
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16
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Elbatrawi YM, Kang CW, Del Valle JR. Total Synthesis of L-156,373 and an oxoPiz Analogue via a Submonomer Approach. Org Lett 2018; 20:2707-2710. [DOI: 10.1021/acs.orglett.8b00912] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yassin M. Elbatrawi
- Department of Chemistry, University of South Florida, Tampa, Florida 33620, United States
| | - Chang Won Kang
- Department of Chemistry, University of South Florida, Tampa, Florida 33620, United States
| | - Juan R. Del Valle
- Department of Chemistry, University of South Florida, Tampa, Florida 33620, United States
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17
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Sarnowski MP, Pedretty KP, Giddings N, Woodcock HL, Del Valle JR. Synthesis and β-sheet propensity of constrained N-amino peptides. Bioorg Med Chem 2018; 26:1162-1166. [DOI: 10.1016/j.bmc.2017.08.017] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2017] [Revised: 08/04/2017] [Accepted: 08/08/2017] [Indexed: 12/14/2022]
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18
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Northrup JD, Mancini G, Purcell CR, Schafmeister CE. Development of Spiroligomer-Peptoid Hybrids. J Org Chem 2017; 82:13020-13033. [PMID: 29161507 DOI: 10.1021/acs.joc.7b01956] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Creating functional macromolecules that possess the diversity and functionality of proteins poses an enormous challenge, as this requires large, preorganized macromolecules to facilitate interactions. Peptoids have been shown to interact with proteins, and combinatorial libraries of peptoids have been useful in discovering new ligands for protein binding. We have created spiroligomer-peptoid hybrids that have a spirocyclic core that preorganizes functional groups in three-dimensional space. By utilizing spiroligomers, we can reduce the number of rotatable bonds between functional groups while increasing the stereochemical diversity of the molecules. We have synthesized 15 new spiroligomer monomer amines that contain two stereocenters and three functional groups (67-84% yields from a common hydantoin starting material) as well as a spiroligomer trimer 25 with six stereocenters and five functional groups. These 16 amines were used to synthesize five first-generation spiroligomer-peptoids hybrids.
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Affiliation(s)
- Justin D Northrup
- Department of Chemistry, Temple University , Philadelphia, Pennsylvania 19122, United States
| | - Giulia Mancini
- Department of Chemistry, University of the Sciences , Philadelphia, Pennsylvania 19104, United States
| | - Claire R Purcell
- Department of Chemistry, Temple University , Philadelphia, Pennsylvania 19122, United States
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19
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Wang C, Jiang YY, Qi CZ. Mechanism and Origin of Chemical Selectivity in Oxaziridine-Based Methionine Modification: A Computational Study. J Org Chem 2017; 82:9765-9772. [DOI: 10.1021/acs.joc.7b02026] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Chen Wang
- Zhejiang
Key Laboratory of Alternative Technologies for Fine Chemicals Process, Shaoxing University, Shaoxing 312000, China
- Department
of Chemistry, Zhejiang University, Hangzhou 310027, People’s Republic of China
| | - Yuan-Ye Jiang
- School
of Chemistry and Chemical Engineering, Qufu Normal University, Qufu 273165, People’s Republic of China
| | - Chen-Ze Qi
- Zhejiang
Key Laboratory of Alternative Technologies for Fine Chemicals Process, Shaoxing University, Shaoxing 312000, China
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