1
|
Salomon G, Tarrat N, Schön JC, Rapacioli M. Low-Energy Transformation Pathways between Naphthalene Isomers. Molecules 2023; 28:5778. [PMID: 37570748 PMCID: PMC10420886 DOI: 10.3390/molecules28155778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Revised: 07/26/2023] [Accepted: 07/27/2023] [Indexed: 08/13/2023] Open
Abstract
The transformation pathways between low-energy naphthalene isomers are studied by investigating the topology of the energy landscape of this astrophysically relevant molecule. The threshold algorithm is used to identify the minima basins of the isomers on the potential energy surface of the system and to evaluate the probability flows between them. The transition pathways between the different basins and the associated probabilities were investigated for several lid energies up to 11 eV, this value being close to the highest photon energy in the interstellar medium (13.6 eV). More than a hundred isomers were identified and a set of 23 minima was selected among them, on the basis of their energy and probability of occurrence. The return probabilities of these 23 minima and the transition probabilities between them were computed for several lid energies up to 11 eV. The first connection appeared at 3.5 eV while all minima were found to be connected at 9.5 eV. The local density of state was also sampled inside their respective basins. This work gives insight into both energy and entropic barriers separating the different basins, which also provides information about the transition regions of the energy landscape.
Collapse
Affiliation(s)
- Grégoire Salomon
- ISAE-SUPAERO, 10 Avenue Édouard-Belin BP 54032, 31055 Toulouse CEDEX 4, France
- CEMES, Université de Toulouse, CNRS, 29 Rue Jeanne Marvig, 31055 Toulouse, France
- MPI for Solid State Research, Heisenbergstr. 1, D-70569 Stuttgart, Germany
- Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, UMR5626, Université de Toulouse (UPS) and CNRS, 31062 Toulouse, France
| | - Nathalie Tarrat
- CEMES, Université de Toulouse, CNRS, 29 Rue Jeanne Marvig, 31055 Toulouse, France
| | - J. Christian Schön
- MPI for Solid State Research, Heisenbergstr. 1, D-70569 Stuttgart, Germany
| | - Mathias Rapacioli
- Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, UMR5626, Université de Toulouse (UPS) and CNRS, 31062 Toulouse, France
| |
Collapse
|
2
|
Deslongchamps P. A new mechanism for the thermal and photochemical Diels-Alder cycloaddition based on the bent bond / antiperiplanar hypothesis orbital model. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133288] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
|
3
|
Stereochemistry of Eʹ and Eʹʹ decarboxylative-dehydration reactions and the bent bond / antiperiplanar hypothesis orbital model. Tetrahedron 2021. [DOI: 10.1016/j.tet.2021.132538] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
|
4
|
Revisiting the conformational analysis of unsaturated organic compounds using the bent bond / antiperiplanar hypothesis. Tetrahedron 2021. [DOI: 10.1016/j.tet.2021.132249] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
|
5
|
Deslongchamps P. Bent bond / antiperiplanar hypothesis and antiaromatic, aromatic and nonaromatic molecules. Tetrahedron 2021. [DOI: 10.1016/j.tet.2021.132161] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
|
6
|
Deslongchamps P. The conformation and reactivity of butadiene and the bent bond/antiperiplanar hypothesis orbital model. Tetrahedron 2021. [DOI: 10.1016/j.tet.2021.132060] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
|
7
|
The thermal rearrangements of naphthalene and azulene. An analysis through the bent bond and antiperiplanar hypothesis orbital model. Tetrahedron 2021. [DOI: 10.1016/j.tet.2021.131956] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
|
8
|
A theoretical study of the potential energy surface for the isomerization reaction of fluoranthene to aceanthrylene: Implications for combustion chemistry. COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2020.113118] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
9
|
Deslongchamps P. The bent bond / antiperiplanar hypothesis and the thermal rearrangement of cyclopropyl halides and tosylates. Tetrahedron 2020. [DOI: 10.1016/j.tet.2020.131416] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
|
10
|
Deslongchamps G, Deslongchamps P. Bent Bond/Antiperiplanar Hypothesis and the Chemical Reactivity of Annulenes. J Org Chem 2020; 85:8645-8655. [PMID: 32501012 DOI: 10.1021/acs.joc.0c01069] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The properties and stereochemical reactivity of cyclobutadiene, benzene, cyclooctatetraene, and the [10]- to [14]annulenes can be uniformly rationalized through the bent bond/antiperiplanar hypothesis (BBAH). This new orbital model considers electronic delocalization between pyramidal diradical resonance structures and associated bent bonds, as it applies to aromatic, nonaromatic, and antiaromatic molecules.
Collapse
Affiliation(s)
- Ghislain Deslongchamps
- Department of Chemistry, University of New Brunswick, P.O. Box 4400, Fredericton, New Brunswick E3B 5A3, Canada
| | | |
Collapse
|
11
|
Hou ICY, Sun Q, Eimre K, Di Giovannantonio M, Urgel JI, Ruffieux P, Narita A, Fasel R, Müllen K. On-Surface Synthesis of Unsaturated Carbon Nanostructures with Regularly Fused Pentagon-Heptagon Pairs. J Am Chem Soc 2020; 142:10291-10296. [PMID: 32428409 PMCID: PMC7304065 DOI: 10.1021/jacs.0c03635] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
![]()
Multiple
fused pentagon–heptagon pairs are frequently found
as defects at the grain boundaries of the hexagonal graphene lattice
and are suggested to have a fundamental influence on graphene-related
materials. However, the construction of sp2-carbon skeletons
with multiple regularly fused pentagon–heptagon pairs is challenging.
In this work, we found that the pentagon–heptagon skeleton
of azulene was rearranged during the thermal reaction of an azulene-incorporated
organometallic polymer on Au(111). The resulting sp2-carbon
frameworks were characterized by high-resolution scanning probe microscopy
techniques and feature novel polycyclic architectures composed of
multiple regularly fused pentagon–heptagon pairs. Moreover,
the calculated analysis of its aromaticity revealed a peculiar polar
electronic structure.
Collapse
Affiliation(s)
- Ian Cheng-Yi Hou
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany.,Department Chemie, Johannes Gutenberg-University Mainz, Duesbergweg 10-14, 55128 Mainz, Germany
| | - Qiang Sun
- Empa, Swiss Federal Laboratories for Materials Science and Technology, 8600 Dübendorf, Switzerland
| | - Kristjan Eimre
- Empa, Swiss Federal Laboratories for Materials Science and Technology, 8600 Dübendorf, Switzerland
| | - Marco Di Giovannantonio
- Empa, Swiss Federal Laboratories for Materials Science and Technology, 8600 Dübendorf, Switzerland
| | - José I Urgel
- Empa, Swiss Federal Laboratories for Materials Science and Technology, 8600 Dübendorf, Switzerland
| | - Pascal Ruffieux
- Empa, Swiss Federal Laboratories for Materials Science and Technology, 8600 Dübendorf, Switzerland
| | - Akimitsu Narita
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany.,Organic and Carbon Nanomaterials Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Kunigami, Okinawa 904-0495, Japan
| | - Roman Fasel
- Empa, Swiss Federal Laboratories for Materials Science and Technology, 8600 Dübendorf, Switzerland.,Department of Chemistry and Biochemistry, University of Bern, 3012 Bern, Switzerland
| | - Klaus Müllen
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany.,Department Chemie, Johannes Gutenberg-University Mainz, Duesbergweg 10-14, 55128 Mainz, Germany
| |
Collapse
|
12
|
Parent JF, Deslongchamps G, Deslongchamps P. Bent Bond/Antiperiplanar Hypothesis: Modulating the Reactivity and the Selectivity in the Glycosylation of Bicyclic Pyranoside Models. J Org Chem 2020; 85:4220-4236. [PMID: 32068401 DOI: 10.1021/acs.joc.9b03412] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Glycosylation reactions were performed on a series of bicyclic C2-substituted pyranoside models to isolate and analyze factors that control the glycosylation stereoselectivities observed in carbohydrates. The bent bond/antiperiplanar hypothesis (BBAH) orbital model rationalizes all of these results by considering hyperconjugation interactions between groups at C2 and the two τ bonds (bent bonds) of oxocarbenium ion intermediates formed under the glycosylation conditions. According to the BBAH, nucleophiles add to oxocarbenium intermediates by SN2-like antiperiplanar displacement of the weaker of their two τ bonds.
Collapse
|
13
|
Parent JF, Bertrand X, Deslongchamps G, Deslongchamps P. Applying the Bent Bond/Antiperiplanar Hypothesis to the Stereoselective Glycosylation of Bicyclic Furanosides. J Org Chem 2020; 85:758-773. [PMID: 31820643 DOI: 10.1021/acs.joc.9b02791] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The glycosylation stereoselectivities for a series of bicyclic furanoside models have been carried out in the presence of weak nucleophiles. These results were analyzed through the bent bond/antiperiplanar hypothesis (BBAH) orbital model to test its validity. According to the BBAH, incoming nucleophiles displace one of the two bent bonds of bicyclic oxocarbenium ion intermediates in an antiperiplanar fashion. The glycosylation stereoselectivity is then governed by the displacement of the weaker bent bond as determined by the presence of electron-withdrawing or -donating substituents at C2. Overall, the BBAH analysis expands Woerpel's "inside/outside attack" glycosylation model by considering the stereoelectronic influence of neighboring electron-withdrawing and -donating groups on the nucleophilic addition to oxocarbenium ion intermediates.
Collapse
Affiliation(s)
| | - Xavier Bertrand
- Département de Chimie , Université Laval , Québec , QC G1V 0A6 , Canada
| | - Ghislain Deslongchamps
- Department of Chemistry , University of New Brunswick , Fredericton , NB E3B 5A3 , Canada
| | | |
Collapse
|
14
|
Deslongchamps G, Deslongchamps P. Thermal rearrangement of optically active tetradeuterated 2-methoxymethyl-methylenecyclopropane and the bent bond/antiperiplanar hypothesis. Org Biomol Chem 2019; 17:7007-7012. [PMID: 31282912 DOI: 10.1039/c9ob01030k] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
The thermolysis of an optically active tetradeuterated 2-methoxymethyl methylenecyclopropane produces a specific ratio of eight possible rearrangement stereoisomers. Despite numerous efforts, this reaction and other similar transformations have defied mechanistic interpretation until now. The direct application of the bent bond/antiperiplanar hypothesis (BBAH) to this reaction produces a mechanistic model that rationalizes all the observed reaction kinetics and products. The BBAH dictates that allyl diradical intermediates, produced during methylenecyclopropane thermolysis, retain pyramidal character due to antiperiplanar delocalization into their respective bent bond.
Collapse
Affiliation(s)
- Ghislain Deslongchamps
- Department of Chemistry, University of New Brunswick, P. O. Box 4400, Fredericton, NB E3B 5A3, Canada.
| | | |
Collapse
|
15
|
Deslongchamps G, Deslongchamps P. Bent Bonds and the Antiperiplanar Hypothesis. A Model To Account for Sigmatropic [1, n]-Hydrogen Shifts. J Org Chem 2018; 83:10383-10388. [PMID: 30041522 DOI: 10.1021/acs.joc.8b01472] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The bent bond/antiperiplanar hypothesis (BBAH) is used to propose a mechanism-based orbital model for the facial selectivity of sigmatropic hydrogen shifts under both thermal and photochemical conditions. The BBAH analysis of these concerted rearrangements invokes transient vibrationally excited singlet diradicals in both 4 n and 4 n+2 polyenes.
Collapse
Affiliation(s)
- Ghislain Deslongchamps
- Department of Chemistry , University of New Brunswick , Fredericton , New Brunswick E3B 5A3 , Canada
| | - Pierre Deslongchamps
- Département de Chimie , Université Laval , Québec City , Québec G1V 0A6 , Canada
| |
Collapse
|
16
|
Deslongchamps G, Deslongchamps P. Bent Bonds (τ) and the Antiperiplanar Hypothesis-The Chemistry of Cyclooctatetraene and Other C 8H 8 Isomers. J Org Chem 2018; 83:5751-5755. [PMID: 29715429 DOI: 10.1021/acs.joc.8b00809] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The bent bond/antiperiplanar hypothesis (BBAH) has been applied to the thermal rearrangements of cyclooctatetraene and related C8H8 isomers. This novel orbital model shows that pyramidal singlet diradical intermediates produced from thermal vibrational states of C8H8 isomers account for their chemical reactivity.
Collapse
Affiliation(s)
- Ghislain Deslongchamps
- Department of Chemistry , University of New Brunswick , Fredericton , NB , E3B 5A3 , Canada
| | | |
Collapse
|