1
|
Chen Q, Wang J, Zhang S, Chen X, Hao J, Wu Q, Zhu D. Discovery and directed evolution of C-C bond formation enzymes for the biosynthesis of β-hydroxy-α-amino acids and derivatives. Crit Rev Biotechnol 2024; 44:1495-1514. [PMID: 38566472 DOI: 10.1080/07388551.2024.2332295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Accepted: 02/16/2024] [Indexed: 04/04/2024]
Abstract
β-Hydroxy-α-amino acids (β-HAAs) have extensive applications in the pharmaceutical, chemical synthesis, and food industries. The development of synthetic methodologies aimed at producing optically pure β-HAAs has been driven by practical applications. Among the various synthetic methods, biocatalytic asymmetric synthesis is considered a sustainable approach due to its capacity to generate two stereogenic centers from simple prochiral precursors in a single step. Therefore, extensive efforts have been made in recent years to search for effective enzymes which enable such biotransformation. This review provides an overview on the discovery and engineering of C-C bond formation enzymes for the biocatalytic synthesis of β-HAAs. We highlight examples where the use of threonine aldolases, threonine transaldolases, serine hydroxymethyltransferases, α-methylserine aldolases, α-methylserine hydroxymethyltransferases, and engineered alanine racemases facilitated the synthesis of β-HAAs. Additionally, we discuss the potential future advancements and persistent obstacles in the enzymatic synthesis of β-HAAs.
Collapse
Affiliation(s)
- Qijia Chen
- College of Food Science and Biology, University of Science and Technology, Shijiazhuang, China
| | - Jingmin Wang
- College of Food Science and Biology, University of Science and Technology, Shijiazhuang, China
| | - Sisi Zhang
- College of Food Science and Biology, University of Science and Technology, Shijiazhuang, China
| | - Xi Chen
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China
| | - Jianxiong Hao
- College of Food Science and Biology, University of Science and Technology, Shijiazhuang, China
| | - Qiaqing Wu
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China
| | - Dunming Zhu
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China
| |
Collapse
|
2
|
Fang S, Wang Z, Xiao L, Meng Y, Lei Y, Liang T, Chen Y, Zhou X, Xu G, Yang L, Zheng W, Wu J. Thermostability and activity improvement in l-threonine aldolase through targeted mutations in V-shaped subunit. Int J Biol Macromol 2024; 278:134994. [PMID: 39181367 DOI: 10.1016/j.ijbiomac.2024.134994] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2024] [Revised: 08/11/2024] [Accepted: 08/21/2024] [Indexed: 08/27/2024]
Abstract
l-threonine aldolase (LTA) catalyzes the synthesis of β-hydroxy-α-amino acids, which are important chiral intermediates widely used in the fields of pharmaceuticals and pesticides. However, the limited thermostability of LTA hinders its industrial application. Furthermore, the trade-off between thermostability and activity presents a challenge in the thermostability engineering of this enzyme. This study proposes a strategy to regulate the rigidity of LTA's V-shaped subunit by modifying its opening and hinge regions, distant from the active center, aiming to mitigate the trade-off. With LTA from Bacillus nealsonii as targeted enzyme, a total of 25 residues in these two regions were investigated by directed evolution. Finally, mutant G85A/M207L/A12C was obtained, showing significantly enhanced thermostability with a 20 °C increase in T5060 to 66 °C, and specific activity elevated by 34 % at the optimum temperature. Molecular dynamics simulations showed that the newly formed hydrophobicity and hydrogen bonds improved the thermostability and boosted proton transfer efficiency. This work enhances the thermostability of LTA while preventing the loss of activity. It opens new avenues for the thermostability engineering of other industrially relevant enzymes with active center located at the interface of subunits or domains.
Collapse
Affiliation(s)
- Sai Fang
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310058, China
| | - Zhe Wang
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310058, China
| | - Lanxin Xiao
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310058, China
| | - Yan Meng
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310058, China
| | - Yixuan Lei
- College of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058, China
| | - Tianxin Liang
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310058, China
| | - Yuhuan Chen
- College of Pharmaceutical Sciences, Zhejiang University, Hangzhou 310058, China
| | - Xiaoshu Zhou
- Transfar Chemicals Group Co., Ltd, Hangzhou 311215, China
| | - Gang Xu
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310058, China
| | - Lirong Yang
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310058, China; ZJU-Hangzhou Global Scientific and Technological Innovation Centre, Zhejiang University, Hangzhou 311215, China
| | - Wenlong Zheng
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310058, China; ZJU-Hangzhou Global Scientific and Technological Innovation Centre, Zhejiang University, Hangzhou 311215, China.
| | - Jianping Wu
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310058, China; ZJU-Hangzhou Global Scientific and Technological Innovation Centre, Zhejiang University, Hangzhou 311215, China.
| |
Collapse
|
3
|
Acebrón-García-de-Eulate M, Mayol-Llinàs J, Holland MTO, Kim SY, Brown KP, Marchetti C, Hess J, Di Pietro O, Mendes V, Abell C, Floto RA, Coyne AG, Blundell TL. Discovery of Novel Inhibitors of Uridine Diphosphate- N-Acetylenolpyruvylglucosamine Reductase (MurB) from Pseudomonas aeruginosa, an Opportunistic Infectious Agent Causing Death in Cystic Fibrosis Patients. J Med Chem 2022; 65:2149-2173. [PMID: 35080396 PMCID: PMC7614804 DOI: 10.1021/acs.jmedchem.1c01684] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Pseudomonas aeruginosa is of major concern for cystic fibrosis patients where this infection can be fatal. With the emergence of drug-resistant strains, there is an urgent need to develop novel antibiotics against P. aeruginosa. MurB is a promising target for novel antibiotic development as it is involved in the cell wall biosynthesis. MurB has been shown to be essential in P. aeruginosa, and importantly, no MurB homologue exists in eukaryotic cells. A fragment-based drug discovery approach was used to target Pa MurB. This led to the identification of a number of fragments, which were shown to bind to MurB. One fragment, a phenylpyrazole scaffold, was shown by ITC to bind with an affinity of Kd = 2.88 mM (LE 0.23). Using a structure guided approach, different substitutions were synthesized and the initial fragment was optimized to obtain a small molecule with Kd = 3.57 μM (LE 0.35).
Collapse
Affiliation(s)
| | - Joan Mayol-Llinàs
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K
| | - Matthew T O Holland
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K
| | - So Yeon Kim
- Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, U.K
| | - Karen P Brown
- Molecular Immunity Unit, Department of Medicine, MRC Laboratory of Molecular Biology, University of Cambridge, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge CB2 0QH, U.K.,Cambridge Centre for Lung Infection, Royal Papworth Hospital, Cambridge, CB23 3RE, UK
| | - Chiara Marchetti
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K
| | - Jeannine Hess
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K
| | - Ornella Di Pietro
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K
| | - Vitor Mendes
- Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, U.K
| | - Chris Abell
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K
| | - R Andres Floto
- Molecular Immunity Unit, Department of Medicine, MRC Laboratory of Molecular Biology, University of Cambridge, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge CB2 0QH, U.K.,Cambridge Centre for Lung Infection, Royal Papworth Hospital, Cambridge, CB23 3RE, UK
| | - Anthony G Coyne
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K
| | - Tom L Blundell
- Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, U.K
| |
Collapse
|
4
|
Wang C, Zhou L, Qiu J, Yang K, Song Q. Rh-Catalyzed diastereoselective addition of arylboronic acids to α-keto N-tert-butanesulfinyl aldimines: synthesis of α-amino ketones. Org Chem Front 2022. [DOI: 10.1039/d1qo01721g] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Herein we present a diastereoselective addition of arylboronic acids to α-keto N-tert-butanesulfinyl aldimines catalyzed by a Rh(i) catalyst.
Collapse
Affiliation(s)
- Cece Wang
- Key Laboratory of Molecule Synthesis and Function Discovery, Fujian Province University, College of Chemistry at Fuzhou University, Fuzhou, Fujian, 350108, China
| | - Lu Zhou
- Key Laboratory of Molecule Synthesis and Function Discovery, Fujian Province University, College of Chemistry at Fuzhou University, Fuzhou, Fujian, 350108, China
| | - Jian Qiu
- Key Laboratory of Molecule Synthesis and Function Discovery, Fujian Province University, College of Chemistry at Fuzhou University, Fuzhou, Fujian, 350108, China
| | - Kai Yang
- Key Laboratory of Molecule Synthesis and Function Discovery, Fujian Province University, College of Chemistry at Fuzhou University, Fuzhou, Fujian, 350108, China
| | - Qiuling Song
- Key Laboratory of Molecule Synthesis and Function Discovery, Fujian Province University, College of Chemistry at Fuzhou University, Fuzhou, Fujian, 350108, China
- Institute of Next Generation Matter Transformation, College of Materials Science Engineering at Huaqiao University, 668 Jimei Boulevard, Xiamen, Fujian, 361021, China
| |
Collapse
|
5
|
Ling F, Wang Y, Huang A, Wang Z, Wang S, He J, Zhao X, Zhong W. Iridium‐Catalyzed Enantioselective and Diastereoselective Hydrogenation of Racemic
β’
‐Keto‐
β
‐Amino Esters via Dynamic Kinetic Resolution. Adv Synth Catal 2021. [DOI: 10.1002/adsc.202100929] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Fei Ling
- College of Pharmaceutical Science Zhejiang University of Technology Hangzhou 310014 People's Republic of China
| | - Yifan Wang
- College of Pharmaceutical Science Zhejiang University of Technology Hangzhou 310014 People's Republic of China
| | - An Huang
- College of Pharmaceutical Science Zhejiang University of Technology Hangzhou 310014 People's Republic of China
| | - Ze Wang
- College of Pharmaceutical Science Zhejiang University of Technology Hangzhou 310014 People's Republic of China
| | - Shiliang Wang
- College of Pharmaceutical Science Zhejiang University of Technology Hangzhou 310014 People's Republic of China
| | - Jiayin He
- College of Pharmaceutical Science Zhejiang University of Technology Hangzhou 310014 People's Republic of China
| | - Xianghua Zhao
- College of Pharmaceutical Science Zhejiang University of Technology Hangzhou 310014 People's Republic of China
| | - Weihui Zhong
- College of Pharmaceutical Science Zhejiang University of Technology Hangzhou 310014 People's Republic of China
| |
Collapse
|
6
|
Zhang Q, Lu Z, Hu C, Zhu K, Jiang M, Huang Z, Chen F. Enantio‐ and Diastereoselective Synthesis of Chiral
Syn
‐Aryl β‐Hydroxy α‐Amino Esters via Biocatalytic Dynamic Reductive Kinetic Resolution. ASIAN J ORG CHEM 2021. [DOI: 10.1002/ajoc.202100276] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Qing‐Chun Zhang
- Institute of Pharmaceutical Science and Technology Zhejiang University of Technology Hangzhou 310014 P. R. China
| | - Zuo‐Lin Lu
- Institute of Pharmaceutical Science and Technology Zhejiang University of Technology Hangzhou 310014 P. R. China
| | - Chen Hu
- Department of Chemistry Engineering Center of Catalysis and Synthesis for Chiral Molecules Fudan University Shanghai Engineering Research Center of Industrial Asymmetric Catalysis of Chiral Drugs 220 Handan Road Shanghai 200433 P. R. China
| | - Kejie Zhu
- Department of Chemistry Engineering Center of Catalysis and Synthesis for Chiral Molecules Fudan University Shanghai Engineering Research Center of Industrial Asymmetric Catalysis of Chiral Drugs 220 Handan Road Shanghai 200433 P. R. China
| | - Meifen Jiang
- Department of Chemistry Engineering Center of Catalysis and Synthesis for Chiral Molecules Fudan University Shanghai Engineering Research Center of Industrial Asymmetric Catalysis of Chiral Drugs 220 Handan Road Shanghai 200433 P. R. China
| | - Zedu Huang
- Department of Chemistry Engineering Center of Catalysis and Synthesis for Chiral Molecules Fudan University Shanghai Engineering Research Center of Industrial Asymmetric Catalysis of Chiral Drugs 220 Handan Road Shanghai 200433 P. R. China
| | - Fener Chen
- Institute of Pharmaceutical Science and Technology Zhejiang University of Technology Hangzhou 310014 P. R. China
- Department of Chemistry Engineering Center of Catalysis and Synthesis for Chiral Molecules Fudan University Shanghai Engineering Research Center of Industrial Asymmetric Catalysis of Chiral Drugs 220 Handan Road Shanghai 200433 P. R. China
| |
Collapse
|
7
|
|
8
|
Phansavath P, Ratovelomanana-Vidal V, Molina Betancourt R, Echeverria PG, Ayad T. Recent Progress and Applications of Transition-Metal-Catalyzed Asymmetric Hydrogenation and Transfer Hydrogenation of Ketones and Imines through Dynamic Kinetic Resolution. SYNTHESIS-STUTTGART 2020. [DOI: 10.1055/s-0040-1705918] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
AbstractBased on the ever-increasing demand for enantiomerically pure compounds, the development of efficient, atom-economical, and sustainable methods to produce chiral alcohols and amines is a major concern. Homogeneous asymmetric catalysis with transition-metal complexes including asymmetric hydrogenation (AH) and transfer hydrogenation (ATH) of ketones and imines through dynamic kinetic resolution (DKR) allowing the construction of up to three stereogenic centers is the main focus of the present short review, emphasizing the development of new catalytic systems combined to new classes of substrates and their applications as well.1 Introduction2 Asymmetric Hydrogenation via Dynamic Kinetic Resolution2.1 α-Substituted Ketones2.2 α-Substituted β-Keto Esters and Amides2.3 α-Substituted Esters2.4 Imine Derivatives3 Asymmetric Transfer Hydrogenation via Dynamic Kinetic Resolution3.1 α-Substituted Ketones3.2 α-Substituted β-Keto Esters, Amides, and Sulfonamides3.3 α,β-Disubstituted Cyclic Ketones3.4 β-Substituted Ketones3.5 Imine Derivatives4. Conclusion
Collapse
Affiliation(s)
- Phannarath Phansavath
- CSB2D Team, Institute of Chemistry for Life & Health Sciences, Chimie ParisTech-CNRS, PSL University
| | | | - Ricardo Molina Betancourt
- CSB2D Team, Institute of Chemistry for Life & Health Sciences, Chimie ParisTech-CNRS, PSL University
| | | | - Tahar Ayad
- CSB2D Team, Institute of Chemistry for Life & Health Sciences, Chimie ParisTech-CNRS, PSL University
| |
Collapse
|
9
|
Novel enzymatic reduction of α-amido- and α-cyanoalkyl-β-keto esters catalyzed by ketoreductases. MOLECULAR CATALYSIS 2020. [DOI: 10.1016/j.mcat.2020.110952] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
10
|
Reversal of diastereoselectivity in palladium-arene interaction directed hydrogenative desymmetrization of 1,3-diketones. Sci China Chem 2019. [DOI: 10.1007/s11426-019-9601-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
|
11
|
Sun G, Jian W, Luo Z, Sun T, Li C, Zhang J, Wang Z. Development of an Efficient and Scalable Asymmetric Synthesis of Eliglustat via Ruthenium(II)-Catalyzed Asymmetric Transfer Hydrogenation. Org Process Res Dev 2019. [DOI: 10.1021/acs.oprd.9b00138] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Guodong Sun
- Guangzhou Institutes of Biomedicine and Heath, Chinese Academy of Sciences, 190 Kaiyuan Road, Guangzhou 510530, P.R. China
- University of Chinese Academy of Sciences, No. 19 Yuquan Road, Beijing 100049, P.R. China
| | - Weilin Jian
- HEC Research and Development Center, HEC Pharm Group, Dongguan 523871, P.R. China
| | - Zhonghua Luo
- HEC Research and Development Center, HEC Pharm Group, Dongguan 523871, P.R. China
| | - Tengfei Sun
- HEC Research and Development Center, HEC Pharm Group, Dongguan 523871, P.R. China
| | - Chao Li
- HEC Research and Development Center, HEC Pharm Group, Dongguan 523871, P.R. China
| | - Jiancun Zhang
- Guangzhou Institutes of Biomedicine and Heath, Chinese Academy of Sciences, 190 Kaiyuan Road, Guangzhou 510530, P.R. China
| | - Zhongqing Wang
- HEC Research and Development Center, HEC Pharm Group, Dongguan 523871, P.R. China
- Anti-infection Innovation Department, New Drug Research Institute, HEC Pharma Group, Dong Guan 523871, P.R. China
| |
Collapse
|