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Alemán J, Humbrías-Martín J, Del Río-Rodríguez R, Aguilar-Galindo F, Díaz-Tendero S, Fernández-Salas JA. Bicarbonate-binding catalysis for the enantioselective desymmetrization of keto sulfonium salts. Nat Commun 2024; 15:4727. [PMID: 38830865 PMCID: PMC11148132 DOI: 10.1038/s41467-024-48832-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2023] [Accepted: 05/14/2024] [Indexed: 06/05/2024] Open
Abstract
Herein, an enantioselective desymmetrization of cyclic keto sulfonium salts through enantioselective deprotonation/ring opening process by anion-binding catalysis is presented. We report a squaramide/HCO3- complex as catalytic active species which is able to stereo-differentiate two enantiomeric protons, triggering the ring opening event taking advantage of the great tendency of sulfonium salts to act as leaving groups. Thus, this desymmetrization methodology give rise to β-methylsulfenylated sulfa-Michael addition type products with excellent yields and very good enantioselectivities. The bifunctional organocatalyst has been demonstrated to be capable of activating simultaneously the base and the keto sulfonium salt by DFT calculations and experimental proofs.
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Affiliation(s)
- José Alemán
- Departamento de Química Orgánica (módulo 1), Universidad Autónoma de Madrid, Cantoblanco, Madrid, Spain.
- Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, Madrid, Spain.
- Center for Innovation in Advanced Chemistry (ORFEO-CINQA), Universidad Autónoma de Madrid, Madrid, Spain.
| | - Jorge Humbrías-Martín
- Departamento de Química Orgánica (módulo 1), Universidad Autónoma de Madrid, Cantoblanco, Madrid, Spain
| | - Roberto Del Río-Rodríguez
- Departamento de Química Orgánica (módulo 1), Universidad Autónoma de Madrid, Cantoblanco, Madrid, Spain
| | - Fernando Aguilar-Galindo
- Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, Madrid, Spain
- Departamento de Química, Universidad Autónoma de Madrid, Cantoblanco, Madrid, Spain
| | - Sergio Díaz-Tendero
- Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, Madrid, Spain
- Departamento de Química, Universidad Autónoma de Madrid, Cantoblanco, Madrid, Spain
- Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid, Madrid, Spain
| | - Jose A Fernández-Salas
- Departamento de Química Orgánica (módulo 1), Universidad Autónoma de Madrid, Cantoblanco, Madrid, Spain.
- Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, Madrid, Spain.
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Nájera C, Foubelo F, Sansano JM, Yus M. Enantioselective desymmetrization reactions in asymmetric catalysis. Tetrahedron 2022. [DOI: 10.1016/j.tet.2022.132629] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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Mardirossian M, Rubini M, Adamo MFA, Scocchi M, Saviano M, Tossi A, Gennaro R, Caporale A. Natural and Synthetic Halogenated Amino Acids-Structural and Bioactive Features in Antimicrobial Peptides and Peptidomimetics. Molecules 2021; 26:7401. [PMID: 34885985 PMCID: PMC8659048 DOI: 10.3390/molecules26237401] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Revised: 11/16/2021] [Accepted: 11/26/2021] [Indexed: 11/17/2022] Open
Abstract
The 3D structure and surface characteristics of proteins and peptides are crucial for interactions with receptors or ligands and can be modified to some extent to modulate their biological roles and pharmacological activities. The introduction of halogen atoms on the side-chains of amino acids is a powerful tool for effecting this type of tuning, influencing both the physico-chemical and structural properties of the modified polypeptides, helping to first dissect and then rationally modify features that affect their mode of action. This review provides examples of the influence of different types of halogenation in amino acids that replace native residues in proteins and peptides. Examples of synthetic strategies for obtaining halogenated amino acids are also provided, focusing on some representative compounds and their biological effects. The role of halogenation in native and designed antimicrobial peptides (AMPs) and their mimetics is then discussed. These are in the spotlight for the development of new antimicrobial drugs to counter the rise of antibiotic-resistant pathogens. AMPs represent an interesting model to study the role that natural halogenation has on their mode of action and also to understand how artificially halogenated residues can be used to rationally modify and optimize AMPs for pharmaceutical purposes.
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Affiliation(s)
- Mario Mardirossian
- Department of Medicine, Surgery and Health Sciences, University of Trieste, Piazza dell’Ospitale, 1, 34125 Trieste, Italy
| | - Marina Rubini
- School of Chemistry, University College Dublin, Belfield, Dublin 4, Ireland;
| | - Mauro F. A. Adamo
- Department of Chemistry, Centre for Synthesis and Chemical Biology (CSCB), RCSI, 123 St. Stephens Green, Dublin 2, Ireland;
| | - Marco Scocchi
- Department of Life Sciences, University of Trieste, Via L. Giorgieri, 5, Q Building, 34127 Trieste, Italy; (M.S.); (A.T.); (R.G.)
| | - Michele Saviano
- Institute of Crystallography (IC), National Research Council (CNR), Via Amendola, 122, 70126 Bari, Italy;
| | - Alessandro Tossi
- Department of Life Sciences, University of Trieste, Via L. Giorgieri, 5, Q Building, 34127 Trieste, Italy; (M.S.); (A.T.); (R.G.)
| | - Renato Gennaro
- Department of Life Sciences, University of Trieste, Via L. Giorgieri, 5, Q Building, 34127 Trieste, Italy; (M.S.); (A.T.); (R.G.)
| | - Andrea Caporale
- Institute of Crystallography (IC), National Research Council (CNR), c/o Area Science Park, S.S. 14 Km 163.5, Basovizza, 34149 Trieste, Italy
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Costanzo M, Cortigiani M, Gillick‐Healy MW, Kelly BG, Monasterolo C, Adamo MFA. Organocatalytic Desymmetrization of Meso‐Aziridines Via Asymmetric Intramolecular Rearrangement. European J Org Chem 2021. [DOI: 10.1002/ejoc.202100502] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Martina Costanzo
- Centre for Synthesis and Chemical Biology Department of Chemistry Royal College of Surgeons in Ireland 123 St. Stephen's Green Dublin 2 Ireland
| | - Mauro Cortigiani
- Centre for Synthesis and Chemical Biology Department of Chemistry Royal College of Surgeons in Ireland 123 St. Stephen's Green Dublin 2 Ireland
| | | | - Brian G. Kelly
- Kelada Pharmachem. Ltd A1.01, Science Centre South, Belfield Dublin 4 Ireland
| | - Claudio Monasterolo
- Centre for Synthesis and Chemical Biology School of Chemistry University College Dublin, Belfield Dublin 4 Ireland
| | - Mauro F. A. Adamo
- Centre for Synthesis and Chemical Biology Department of Chemistry Royal College of Surgeons in Ireland 123 St. Stephen's Green Dublin 2 Ireland
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Bencivenni G, Salazar Illera D, Moccia M, Houk KN, Izzo JA, Novacek J, Grieco P, Vetticatt MJ, Waser M, Adamo MFA. Study of Ground State Interactions of Enantiopure Chiral Quaternary Ammonium Salts and Amides, Nitroalkanes, Nitroalkenes, Esters, Heterocycles, Ketones and Fluoroamides. Chemistry 2021; 27:11352-11366. [PMID: 33963788 PMCID: PMC8453964 DOI: 10.1002/chem.202100908] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Indexed: 11/21/2022]
Abstract
Chiral phase-transfer catalysis provides high level of enantiocontrol, however no experimental data showed the interaction of catalysts and substrates. 1 H NMR titration was carried out on Cinchona and Maruoka ammonium bromides vs. nitro, carbonyl, heterocycles, and N-F containing compounds. It was found that neutral organic species and quaternary ammonium salts interacted via an ensemble of catalyst + N-C-H and (sp2 )C-H, specific for each substrate studied. The correspondent BArF salts interacted with carbonyls via a diverse set of + N-C-H and (sp2 )C-H compared to bromides. This data suggests that BArF ammonium salts may display a different enantioselectivity profile. Although not providing quantitative data for the affinity constants, the data reported proofs that chiral ammonium salts coordinate with substrates, prior to transition state, through specific C-H positions in their structures, providing a new rational to rationalize the origin of enantioselectivity in their catalyses.
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Affiliation(s)
- Grazia Bencivenni
- Department of ChemistryRCSIUniversity of Medicine and Health Science123 St Stephen's GreenDublin 2, DublinRepublic of Ireland
| | - Diana Salazar Illera
- Department of ChemistryRCSIUniversity of Medicine and Health Science123 St Stephen's GreenDublin 2, DublinRepublic of Ireland
| | - Maria Moccia
- CNR-ICCInstitute of CrystallographyVia G. Amendola 122/O70126BariItaly
| | - K. N. Houk
- Department of Chemistry and BiochemistryUniversity of California, Los AngelesLos AngelesCA 90095-1569USA
| | - Joseph A. Izzo
- Department of ChemistryState University of NY BinghamtonBinghamton, NYUSA
| | - Johanna Novacek
- Institute of Organic ChemistryJohannes Kepler University LinzAltenbergerstrasse 694040LinzAustria
| | - Paolo Grieco
- Faculty of PharmacyUniversity of Naples Federico IICorso Umberto I, 4080138Napoli, NAItaly
| | | | - Mario Waser
- Institute of Organic ChemistryJohannes Kepler University LinzAltenbergerstrasse 694040LinzAustria
| | - Mauro F. A. Adamo
- Department of ChemistryRCSIUniversity of Medicine and Health Science123 St Stephen's GreenDublin 2, DublinRepublic of Ireland
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A flexible strategy for the synthesis of bifunctional 6′-(thio)-urea containing Cinchona alkaloid ammonium salts. Tetrahedron 2020. [DOI: 10.1016/j.tet.2019.130816] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Destro D, Bottinelli C, Ferrari L, Albanese DCM, Bencivenni G, Gillick-Healy MW, Kelly BG, Adamo MFA. Enantioselective Synthesis of 3,4-Dihydropyran-2-ones via Phase-Transfer-Catalyzed Addition–Cyclization of Acetylacetone to Cinnamic Thioesters. J Org Chem 2020; 85:5183-5192. [DOI: 10.1021/acs.joc.9b03216] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Dario Destro
- Centre for Synthesis and Chemical Biology (CSCB), Department of Chemistry, Royal College of Surgeons in Ireland, 123 St. Stephen’s Green, Dublin 2, Ireland
| | - Carlo Bottinelli
- Department of Chemistry, Universitá degli Studi di Milano, via Golgi 19, 20133, Milano, Italy
| | - Ludovica Ferrari
- Department of Chemistry, Universitá degli Studi di Milano, via Golgi 19, 20133, Milano, Italy
| | - Domenico C. M. Albanese
- Department of Chemistry, Universitá degli Studi di Milano, via Golgi 19, 20133, Milano, Italy
| | - Grazia Bencivenni
- Centre for Synthesis and Chemical Biology (CSCB), Department of Chemistry, Royal College of Surgeons in Ireland, 123 St. Stephen’s Green, Dublin 2, Ireland
| | - Malachi W. Gillick-Healy
- Centre for Synthesis and Chemical Biology (CSCB), Department of Chemistry, Royal College of Surgeons in Ireland, 123 St. Stephen’s Green, Dublin 2, Ireland
| | - Brian G. Kelly
- Kelada Pharmachem. Ltd. A1.01, Science Centre South, Belfield, Dublin 4, Ireland
| | - Mauro F. A. Adamo
- Centre for Synthesis and Chemical Biology (CSCB), Department of Chemistry, Royal College of Surgeons in Ireland, 123 St. Stephen’s Green, Dublin 2, Ireland
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