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Rana G, Kar A, Kundal S, Musib D, Jana U. DDQ/Fe(NO 3) 3-Catalyzed Aerobic Synthesis of 3-Acyl Indoles and an In Silico Study for the Binding Affinity of N-Tosyl-3-acyl Indoles toward RdRp against SARS-CoV-2. J Org Chem 2023; 88:838-851. [PMID: 36622749 DOI: 10.1021/acs.joc.2c02009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
In the present study, we herein report a DDQ-catalyzed new protocol for the synthesis of substituted 3-acylindoles. Being a potential system for virtual hydrogen storage, introduction of catalytic DDQ in combination with Fe(NO3)3·9H2O and molecular oxygen as co-catalysts offers a regioselective oxo-functionalization of C-3 alkyl-/aryllidine indolines even with scale-up investigations. Intermediate isolation, their spectroscopic characterization, and the density functional theory calculations indicate that the method involves dehydrogenative allylic hydroxylation and 1,3-functional group isomerization/aromatization followed by terminal oxidation to afford 3-acylindoles quantitatively with very high regioselectivity. This method is very general for a large number of substrates with varieties of functional groups tolerance emerging high-yield outcome. Moreover, molecular docking studies were performed for some selected ligands with an RNA-dependent RNA polymerase complex (RdRp complex) of SARS-CoV-2 to illustrate the binding potential of those ligands. The docking results revealed that few of the ligands possess the potential to inhibit the RdRp of SARS-Cov-2 with binding energies (-6.7 to -8.19 kcal/mol), which are comparably higher with respect to the reported binding energies of the conventional re-purposed drugs such as Remdesivir, Ribavirin, and so forth (-4 to -7 kcal/mol).
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Affiliation(s)
- Gopal Rana
- Department of Chemistry, Jadavpur University, Kolkata 700 032, West Bengal, India
| | - Abhishek Kar
- Department of Chemistry, Jadavpur University, Kolkata 700 032, West Bengal, India
| | - Sandip Kundal
- Department of Chemistry, Jadavpur University, Kolkata 700 032, West Bengal, India
| | - Dulal Musib
- Department of Chemistry, National Institute of Technology Manipur, Langol, Imphal 795004, Manipur, India
| | - Umasish Jana
- Department of Chemistry, Jadavpur University, Kolkata 700 032, West Bengal, India
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Suzdalev KF, Gazizova JV, Tkachev VV, Kletskii ME, Lisovin AV, Burov ON, Steglenko DV, Kurbatov SV, Shilov GV. Domino reactions of thiopyrano[4,3- b]indole-3(5 H)-thiones and dimethyl acetylenedicarboxylate: Quantum chemical investigation and experiment. J Sulphur Chem 2022. [DOI: 10.1080/17415993.2022.2139147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
Affiliation(s)
| | - Julia V. Gazizova
- Department of Chemistry, Southern Federal University, Rostov-on-Don, Russia
| | - Valery V. Tkachev
- Institute of Problems of Chemical Physics, Russian Academy of Sciences, Chernogolovka, Russia
| | | | - Anton V. Lisovin
- Institute of Physical and Organic Chemistry, Southern Federal University, Rostov-on-Don, Russia
| | - Oleg N. Burov
- Department of Chemistry, Southern Federal University, Rostov-on-Don, Russia
| | - Dmitriy V. Steglenko
- Institute of Physical and Organic Chemistry, Southern Federal University, Rostov-on-Don, Russia
| | - Sergey V. Kurbatov
- Department of Chemistry, Southern Federal University, Rostov-on-Don, Russia
| | - Gennadii V. Shilov
- Institute of Problems of Chemical Physics, Russian Academy of Sciences, Chernogolovka, Russia
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3
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Suzdalev KF, Vyalyh JV, Tkachev VV, Lysenko EA, Burov ON, Lisovin AV, Kletskii ME, Kurbatov SV. Lithium-Promoted Cycloaddition of Indole-2,3-dienolates and Carbon Disulfide as a One-Pot Route to Thiopyrano[4,3- b]indole-3(5 H)-thiones. J Org Chem 2021; 86:11698-11707. [PMID: 34338514 DOI: 10.1021/acs.joc.1c01200] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A new approach for the annulation of a thiopyrane ring to an indole core under mild conditions was developed. Treating 2-methyl-3-acylindoles with lithium diisopropyl amide leads to the elimination of a proton from the 2-methyl group. The lithium indole-2,3-dienolates obtained were found to react with CS2 to give the corresponding thiopyrano[4,3-b]indole-3(5H)-thiones. The mechanism represents a stepwise addition through ion-pair formation, according to PCM/B3LYP/6-311++G**, PBE1PBE/6-311++G**, and MP2//HF/6-311++G** quantum chemical calculations. AIM calculations revealed the essential role of the Li atom at all stages of the process.
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Affiliation(s)
| | - Julia V Vyalyh
- Department of Chemistry, Southern Federal University, Rostov-on-Don 344090, Russia
| | - Valery V Tkachev
- Institute of Problems of Chemical Physics, Russian Academy of Sciences, Chernogolovka 142432, Russia
| | - Ekaterina A Lysenko
- Department of Chemistry, Southern Federal University, Rostov-on-Don 344090, Russia
| | - Oleg N Burov
- Department of Chemistry, Southern Federal University, Rostov-on-Don 344090, Russia
| | - Anton V Lisovin
- Department of Chemistry, Southern Federal University, Rostov-on-Don 344090, Russia
| | - Mikhail E Kletskii
- Department of Chemistry, Southern Federal University, Rostov-on-Don 344090, Russia
| | - Sergey V Kurbatov
- Department of Chemistry, Southern Federal University, Rostov-on-Don 344090, Russia
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Raju P, Saravanan V, Pavunkumar V, Mohanakrishnan AK. Pd(0)-Catalyzed Intramolecular Heck reaction of 2/3-Aryl(amino)methyl-3/2-bromoindoles: Syntheses of 3,4-Benzo[ c]-β-carbolines, Benzo[4,5]isothiazolo[2,3- a]indole 5,5-Dioxides, and 1,2-Benzo[ a]-γ-carbolines. J Org Chem 2021; 86:1925-1937. [PMID: 33395298 DOI: 10.1021/acs.joc.0c02152] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
One-pot synthesis of 3,4-benzo[c]-β-carbolines was achieved from 2-aryl(tosylamino)methyl-3-bromoindoles via 10 mol % Pd(OAc)2/PPh3-mediated intramolecular Heck coupling using K2CO3 as a base in DMF at 110 °C with concomitant aromatization through an elimination of tosylsulfinic acid. Under identical conditions, the isomeric 3-aryl(tosylamino)methyl-2-bromoindoles upon intramolecular Heck reaction furnished benzo[4,5]isothiazolo[2,3-a]indole 5,5-dioxides instead of the expected γ-carbolines. However, synthesis of the expected γ-carboline framework, 3-tosyl-6,9-dihydro-1,2-benzo[a]-γ-carbolines, could be achieved from 3-aryl(tosylamino)methyl-2-bromoindoles containing a mesitylene sulfonyl unit as a protecting group on the indole nitrogen.
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Affiliation(s)
- Potharaju Raju
- Department of Organic Chemistry, School of Chemical Sciences, University of Madras, Guindy Campus, Chennai 600 025, Tamil Nadu, India
| | - Velu Saravanan
- Department of Organic Chemistry, School of Chemical Sciences, University of Madras, Guindy Campus, Chennai 600 025, Tamil Nadu, India
| | - Vinayagam Pavunkumar
- Department of Organic Chemistry, School of Chemical Sciences, University of Madras, Guindy Campus, Chennai 600 025, Tamil Nadu, India
| | - Arasambattu K Mohanakrishnan
- Department of Organic Chemistry, School of Chemical Sciences, University of Madras, Guindy Campus, Chennai 600 025, Tamil Nadu, India
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Banerjee A, Kundu S, Bhattacharyya A, Sahu S, Maji MS. Benzannulation strategies for the synthesis of carbazoles, indolocarbazoles, benzocarbazoles, and carbolines. Org Chem Front 2021. [DOI: 10.1039/d1qo00092f] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
This review presents a critical and authoritative analysis of several exciting benzannulation approaches developed in the past decade for the construction of carbazoles, indolocarbazoles, benzocarbazoles, and carbolines.
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Affiliation(s)
- Ankush Banerjee
- Department of Chemistry
- Indian Institute of Technology Kharagpur
- Kharagpur 721302
- India
| | - Samrat Kundu
- Department of Chemistry
- Indian Institute of Technology Kharagpur
- Kharagpur 721302
- India
| | - Arya Bhattacharyya
- Department of Chemistry
- Indian Institute of Technology Kharagpur
- Kharagpur 721302
- India
| | - Samrat Sahu
- Department of Chemistry
- Indian Institute of Technology Kharagpur
- Kharagpur 721302
- India
| | - Modhu Sudan Maji
- Department of Chemistry
- Indian Institute of Technology Kharagpur
- Kharagpur 721302
- India
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Gong M, Guo J, Jiang P, Zhang Y, Fu Z, Huang W. Facile Synthesis of Polysubstituted Indolizines via One-Pot Reaction of 1-Acetylaryl 2-Formylpyrroles and Enals. Chem Asian J 2020; 15:352-355. [PMID: 31821730 DOI: 10.1002/asia.201901517] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2019] [Revised: 11/22/2019] [Indexed: 01/28/2023]
Abstract
An efficient method for the synthesis of polysubstituted indolizines has been developed based on formal [4+2] annulation of 1-acetylaryl 2-formylpyrroles with enals, followed by oxidative aromatization. Pyridine-type six-membered rings were constructed in this transformation. This transition metal-free reaction features mild reaction conditions, a broad substrate scope, and excellent functional group tolerance. Notably, the formyl group is well tolerated under reaction conditions.
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Affiliation(s)
- Minghua Gong
- Key Laboratory of Flexible Electronics & Institute of Advanced Materials, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech University, 30 South Puzhu Road, Nanjing, 211816, China
| | - Jingcheng Guo
- Key Laboratory of Flexible Electronics & Institute of Advanced Materials, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech University, 30 South Puzhu Road, Nanjing, 211816, China
| | - Pengrui Jiang
- Key Laboratory of Flexible Electronics & Institute of Advanced Materials, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech University, 30 South Puzhu Road, Nanjing, 211816, China
| | - Ye Zhang
- Key Laboratory of Flexible Electronics & Institute of Advanced Materials, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech University, 30 South Puzhu Road, Nanjing, 211816, China
| | - Zhenqian Fu
- Key Laboratory of Flexible Electronics & Institute of Advanced Materials, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech University, 30 South Puzhu Road, Nanjing, 211816, China.,Shaanxi Institute of Flexible Electronics (SIFE), Northwestern Polytechnical University (NPU), 127 West Youyi Road, Xi'an, 710072, China
| | - Wei Huang
- Key Laboratory of Flexible Electronics & Institute of Advanced Materials, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech University, 30 South Puzhu Road, Nanjing, 211816, China.,Shaanxi Institute of Flexible Electronics (SIFE), Northwestern Polytechnical University (NPU), 127 West Youyi Road, Xi'an, 710072, China
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