Pathways for the Formation of Formamide, a Prebiotic Biomonomer: Metal-Ions in Interstellar Gas-Phase Chemistry

Vetting molecular candidates posited for the first diffuse interstellar bands (5780 and 5797 Å): a quantum chemical study

Diffuse interstellar bands (DIBs) comprise over 550 celestial absorption features whose molecular carriers remain largely unidentified or contested. In this study, we present a statistical analysis that identifies two previously overlooked families of strongly correlated lines associated with the original Heger features at 5780 and 5797 Å. Comprehensive UV-vis spectra were computed at several levels of theory (mainly TD-PBE0 and EOM-CCSD with an aug-cc-pVTZ basis set) for the following candidates posited as diffuse interstellar band carriers (in both their neutral and cationic forms): 2-cyclopenten-1-one, 3(2H)-thiophenone, 2(5H)-furanone, 3(2H)-selenophenone, 3-hydroxypropanamide, oxamic acid, lactamide, and glycolamide. Glycolamide is of particular interest since it has recently been detected in microwave (rotational) spectra of the comparatively dense molecular cloud G+0.693-0027. Importantly, the computations reveal that the anions exhibit marginal electron affinities despite producing improbable lines (i.e., with excitations to levels above the ionization threshold) overlapping DIBs, whereas the neutral molecules yield lines shortward of DIBs and possibly linked to the broad 220 nm interstellar feature, and their cations produced too few lines in the DIB domain inspected. Further vetting of candidates awaits the construction of an expansive optical-infrared molecular ion database, which will facilitate concurrent matching to DIBs in the optical (electronic) and their energy differences in the mid-infrared (vibrational), thereby narrowing the parameter space.

Role of metal(ii) hexacyanocobaltate(iii) surface chemistry for prebiotic peptides synthesis

Double metal cyanide (DMC), a heterogeneous catalyst, provides a surface for the polymerization of amino acids. Based on the hypothesis, the present study is designed to evaluate favorable environmental conditions for the chemical evolution and origin of life, such as the effects of temperature and time on the oligomerization of glycine and alanine on metal(ii) hexacyanocobaltate(iii), MHCCo. A series of MHCCo complexes were synthesized and characterized by XRD and FT-IR techniques. The effect of outer metal ions present in the MHCCo complexes on the condensation of glycine and alanine was studied. Our results revealed that Zn2+ ions in the outer sphere showed high catalytic activity compared to other metal ions in the outer sphere. Manganese(ii) hexacyanocobaltate(iii) (MnHCCo), iron(ii) hexacyanocobaltate(iii) (FeHCCo), nickel(ii) hexacyanocobaltate(iii) (NiHCCo) complexes condense the glycine up to trimer and the alanine up to dimer. At the same time, ZnHCCo showed the most valuable catalytic properties that change glycine into a tetramer and alanine into a dimer with a high yield at 90 °C after four weeks. ZnHCCo showed high catalytic activity because of its high surface area compared to other MHCCo complexes. High-Performance Liquid Chromatography (HPLC) and Electron Spray Ionization-Mass Spectroscopy (ESI-MS) techniques were used to confirm the oligomer products of glycine and alanine formed on MHCCo complexes. The results also exposed the catalytic role of MHCCo for the oligomerization of biomolecules, thus supporting chemical evolution.

Determinism of formamide-based biogenic prebiotic reactions

Formamide reacted in the presence of a catalyst and of a source of energy affords a rich and complex panel of compounds, including amino acids, amino sugars, nucleic bases, nucleosides, carboxylic acids, aliphatic chains, and more. Nor the source of energy nor the type of catalyst are fastidious. All the catalysts tested have activity; each catalyst affords its own specific set of products, although the panels of products of each catalyst largely overlap. Potentially biogenic compounds form in reasonable conditions and the chemistry that determines the initial syntheses is facile. Hence, Darwins warm little pond did not rely on exotic environments nor on magic tricks. The type of molecules resulting from a mixture of formamide and of two selected products of its initial reactions hint that the initial prebiotic soup was deterministic and oriented towards life-as-we-know-it.

Peptide Bonds in the Interstellar Medium: Facile Catalytic Formation from Nitriles on Water-Ice Grains

A recent suggestion that acetamide, CH₃C(O)NH₂, could be readily formed on water-ice grains by the acid induced addition of water across the C≡N bond has now been shown to be credible. Computational modeling of the reaction between R-CN (R = H, CH₃) and a cluster of 32 molecules of water and one H₃O⁺ proceeds catalytically to form first a hydroxy imine R-C(OH)═NH and second an amide R-C(O)NH₂. Quantum mechanical tunneling, computed from small-curvature estimates, plays a key role in the rates of these reactions. This work represents the first reasonable effort to show, in general, how amides can be formed from nitriles and water, which are abundant substrates, reacting on a water-ice cluster containing catalytic amounts of hydrons in the interstellar medium with consequential implications toward the origins of life.

Icy Grain Mantle Surface Astrochemistry of MgNC: The Emergence of Metal Ion Catalysis Studied via Model Ice Cluster Calculations

One of a small number of known magnesium-containing astromolecules, magnesium isocyanide (MgNC) was first detected in 1986. MgNC is an intriguing reactant to consider: it is an open-shell radical in which its metal atom forms a bond with CN that is a mixture of ionic and covalent character. While its gas phase astrochemistry has received prior attention, the grain surface chemistry of MgNC has never been studied. Because of its ionic character, MgNC is found to interact far more strongly with an ice surface than molecules with a greater degree of covalency. As a radical, it may react with closed-shell molecules deposited from the gas phase. In this work, cluster calculations treated with density functional theory and correlation consistent basis sets were used to model the deposition of MgNC on clusters containing 17 and 24 water molecules, which were then allowed to react with acetylene (HCCH) and hydrogen cyanide (HCN) as well as with H atoms. The addition of H to MgNC-nH₂O yields hydromagnesium isocyanide (HMgNC), a known astromolecule that may be ejected into the gas phase. HCCH and HCN bind to MgNC-nH₂O to form intermediate radical compounds that may then also react with H atoms. There is enough reaction energy from H addition to eject fragments of the intermediates into the gas phase: the vinyl radical (C₂H₃) for HCCH and the methaniminyl radical (H₂CN) for HCN. That leaves MgNC-nH₂O to perform further catalytic activity. Alternatively, various hydrogenated divalent Mg compounds may also be stabilized and frozen into the ice or potentially ejected into the gas phase. Benchmark coupled cluster theory calculations in limited systems were used to characterize the submerged reaction barriers present when HCCH or HCN add to MgNC in the gas phase.

On the formation of CN bonds in Titan's atmosphere-a unified reaction valley approach study

In this work, we investigated the formation of protonated hydrogen cyanide HCNH⁺ and methylene amine cation CH[Formula: see text] (both identified in Titan's upper atmosphere) from three different pathways which stem from the interaction between CH₄ and N⁺(³P). As a mechanistic tool, we used the Unified Reaction Valley Approach (URVA) complemented with the Local Mode Analysis (LMA) assessing the strength of the CN bonds formed in these reactions. Our URVA studies could provide a comprehensive overview on bond formation/cleavage processes relevant to the specific mechanism of eight reactions R1- R8 that occur across the three pathways. In addition, we could explain the formation of CH[Formula: see text] and the appearance of HCNH⁺ and CHNH[Formula: see text] along these paths. Although only smaller molecules are involved in these reactions including isomerization, hydrogen atom abstraction, and hydrogen molecule capture, we found a number of interesting features, such as roaming in reaction R3 or the primary interaction of H₂ with the carbon atom in HCNH⁺ in reaction R8 followed by migration of one of the H₂ hydrogen atoms to the nitrogen which is more cost effective than breaking the HH bond first; a feature often found in catalysis. In all cases, charge transfer between carbon and nitrogen could be identified as a driving force for the CN bond formation. As revealed by LMA, the CN bonds formed in reactions R1-R8 cover a broad bond strength range from very weak to very strong, with the CN bond in protonated hydrogen cyanide HCNH⁺ identified as the strongest of all molecules investigated in this work. Our study demonstrates the large potential of both URVA and LMA to shed new light into these extraterrestrial reactions to help better understand prebiotic processes as well as develop guidelines for future investigations involving areas of complex interstellar chemistry. In particular, the formation of CN bonds as a precursor to the extraterrestrial formation of amino acids will be the focus of future investigations. Formation of CN bonds in Titan's atmosphere visualized via the reaction path curvature.