1
|
Sriram A, Choi S, Yu X, Brabson LM, Das A, Ulissi Z, Uyttendaele M, Medford AJ, Sholl DS. The Open DAC 2023 Dataset and Challenges for Sorbent Discovery in Direct Air Capture. ACS CENTRAL SCIENCE 2024; 10:923-941. [PMID: 38799660 PMCID: PMC11117325 DOI: 10.1021/acscentsci.3c01629] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 05/29/2024]
Abstract
Direct air capture (DAC) of CO2 with porous adsorbents such as metal-organic frameworks (MOFs) has the potential to aid large-scale decarbonization. Previous screening of MOFs for DAC relied on empirical force fields and ignored adsorbed H2O and MOF deformation. We performed quantum chemistry calculations overcoming these restrictions for thousands of MOFs. The resulting data enable efficient descriptions using machine learning.
Collapse
Affiliation(s)
- Anuroop Sriram
- Fundamental AI Research,
Meta AI, Meta, Menlo Park, California 94025, United States
| | - Sihoon Choi
- Fundamental AI Research,
Meta AI, Meta, Menlo Park, California 94025, United States
- School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
| | - Xiaohan Yu
- School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
| | - Logan M. Brabson
- School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
| | - Abhishek Das
- Fundamental AI Research,
Meta AI, Meta, Menlo Park, California 94025, United States
| | - Zachary Ulissi
- Fundamental AI Research,
Meta AI, Meta, Menlo Park, California 94025, United States
| | - Matt Uyttendaele
- Fundamental AI Research,
Meta AI, Meta, Menlo Park, California 94025, United States
| | - Andrew J. Medford
- School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
| | - David S. Sholl
- School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-2008, United States
| |
Collapse
|
2
|
Kobayashi T, Ikeda T, Nakayama A. Long-range proton and hydroxide ion transfer dynamics at the water/CeO 2 interface in the nanosecond regime: reactive molecular dynamics simulations and kinetic analysis. Chem Sci 2024; 15:6816-6832. [PMID: 38725504 PMCID: PMC11077578 DOI: 10.1039/d4sc01422g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Accepted: 04/02/2024] [Indexed: 05/12/2024] Open
Abstract
The structural properties, dynamical behaviors, and ion transport phenomena at the interface between water and cerium oxide are investigated by reactive molecular dynamics (MD) simulations employing neural network potentials (NNPs). The NNPs are trained to reproduce density functional theory (DFT) results, and DFT-based MD (DFT-MD) simulations with enhanced sampling techniques and refinement schemes are employed to efficiently and systematically acquire training data that include diverse hydrogen-bonding configurations caused by proton hopping events. The water interfaces with two low-index surfaces of (111) and (110) are explored with these NNPs, and the structure and long-range proton and hydroxide ion transfer dynamics are examined with unprecedented system sizes and long simulation times. Various types of proton hopping events at the interface are categorized and analyzed in detail. Furthermore, in order to decipher the proton and hydroxide ion transport phenomena along the surface, a counting analysis based on the semi-Markov process is formulated and applied to the MD trajectories to obtain reaction rates by considering the transport as stochastic jump processes. Through this model, the coupling between hopping events, vibrational motions, and hydrogen bond networks at the interface are quantitatively examined, and the high activity and ion transport phenomena at the water/CeO2 interface are unequivocally revealed in the nanosecond regime.
Collapse
Affiliation(s)
- Taro Kobayashi
- Department of Chemical System Engineering, The University of Tokyo Tokyo 113-8656 Japan
| | - Tatsushi Ikeda
- Department of Chemical System Engineering, The University of Tokyo Tokyo 113-8656 Japan
| | - Akira Nakayama
- Department of Chemical System Engineering, The University of Tokyo Tokyo 113-8656 Japan
| |
Collapse
|
3
|
Di Biase M, Brugnoli L, Miyatani K, Akaji M, Yoshida T, Urata S, Pedone A. Impact of Atomic Defects on Ceria Surfaces on Chemical Mechanical Polishing of Silica Glass Surfaces. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:6773-6785. [PMID: 38507244 DOI: 10.1021/acs.langmuir.3c03557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/22/2024]
Abstract
This study investigates the impact of atomic defects, such as oxygen vacancies and Ce3+ ions, on cerium oxide (ceria) surfaces during chemical mechanical polishing (CMP) for silica glass finishing. Using density functional theory (DFT) and reactive molecular dynamics simulations, the interaction of orthosilicic molecules and silica glass with dry and wet ceria surfaces is explored. Defects alter the surface reactivity, leading to the dissociation of orthosilicic acid on oxygen vacancies, forming a strong Si-O-Ce bond. Hydroxylated surfaces exhibit easier oxygen vacancy formation and thermodynamically favored substitution of hydroxyl groups with orthosilicic acid. A new ReaxFF library for silica/ceria interfaces with defects is validated using DFT outcomes. Reactive MD simulations demonstrate that ceria surfaces with 30% Ce3+ ions on (111) planes exhibit higher polishing efficiency, attributed to increased Si-O-Ce bond formation. The simultaneous presence of oxygen vacancies and various acidic and basic sites on ceria surfaces enhances the polishing efficiency, involving acid-base reactions with silica. Defective surfaces show superior efficiency by removing silicate chains, contrasting with nondefective surfaces removing isolated orthosilicate units. This study provides insights into optimizing CMP processes for high-precision glass industry surface finishing.
Collapse
Affiliation(s)
- Mirko Di Biase
- Department of Chemical and Geological Sciences, University of Modena and Reggio Emilia, Via G. Campi 103, 41125 Modena, Italy
| | - Luca Brugnoli
- Chimie ParisTech, PSL Research University, CNRS, Institut de Recherche de Chimie Paris, 75005 Paris, France
| | - Katsuaki Miyatani
- Innovative Technology Laboratories, AGC Inc., Yokohama, Kanagawa 230-0045, Japan
| | - Masatoshi Akaji
- Procurement & Logistics Division, AGC Inc., Yokohama, Kanagawa 230-0045, Japan
| | - Takumi Yoshida
- Innovative Technology Laboratories, AGC Inc., Yokohama, Kanagawa 230-0045, Japan
| | - Shingo Urata
- Innovative Technology Laboratories, AGC Inc., Yokohama, Kanagawa 230-0045, Japan
| | - Alfonso Pedone
- Department of Chemical and Geological Sciences, University of Modena and Reggio Emilia, Via G. Campi 103, 41125 Modena, Italy
| |
Collapse
|
4
|
Monti S, Trouki C, Barcaro G. Disclosing gate-opening/closing events inside a flexible metal-organic framework loaded with CO 2 by reactive and essential dynamics. NANOSCALE 2023; 15:14505-14513. [PMID: 37609787 DOI: 10.1039/d3nr02760k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/24/2023]
Abstract
We have combined reactive molecular dynamics simulations with principal component analysis to provide a clearer view of the interactions and motion of the CO2 molecules inside a metal-organic framework and the movements of the MOF components that regulate storage, adsorption, and diffusion of the guest species. The tens-of-nanometer size of the simulated model, the capability of the reactive force field tuned to reproduce the inorganic-organic material confidently, and the unconventional use of essential dynamics have effectively disclosed the gate-opening/closing phenomenon, possible coordinations of CO2 at the metal centers, all the diffusion steps inside the MOF channels, the primary motions of the linkers, and the effects of their concerted rearrangements on local CO2 relocations.
Collapse
Affiliation(s)
- Susanna Monti
- CNR-ICCOM, Institute of Chemistry of Organometallic Compounds, Pisa 56124, Italy.
| | - Cheherazade Trouki
- CNR-IPCF, Institute of Chemical and Physical Processes, Pisa 56124, Italy
- Department of Pharmacy, University of Pisa, Pisa 56126, Italy
| | - Giovanni Barcaro
- CNR-IPCF, Institute of Chemical and Physical Processes, Pisa 56124, Italy
| |
Collapse
|
5
|
Brugnoli L, Miyatani K, Akaji M, Urata S, Pedone A. New Atomistic Insights on the Chemical Mechanical Polishing of Silica Glass with Ceria Nanoparticles. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023; 39:5527-5541. [PMID: 37029752 PMCID: PMC10116594 DOI: 10.1021/acs.langmuir.3c00304] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Revised: 03/29/2023] [Indexed: 06/19/2023]
Abstract
Reactive molecular dynamics simulations have been used to simulate the chemical mechanical polishing (CMP) process of silica glass surfaces with the ceria (111) and (100) surfaces, which are predominantly found in ceria nanoparticles. Since it is known that an alteration layer is formed at the glass surface as a consequence of the chemical interactions with the slurry solutions used for polishing, we have created several glass surface models with different degrees of hydroxylation and porosity for investigating their morphology and chemistry after the interaction with acidic, neutral, and basic water solutions and the ceria surfaces. Both the chemical and mechanical effects under different pressure and temperature conditions have been studied and clarified. According to the simulation results, we have found that the silica slab with a higher degree of hydroxylation (thicker alteration layer) is more reactive, suggesting that proper chemical treatment is fundamental to augment the polishing efficiency. The reactivity between the silica and ceria (111) surfaces is higher at neutral pH since more OH groups present at the two surfaces increased the Si-O-Ce bonds formed at the interface. Usually, an outermost tetrahedral silicate unit connected to the rest of the silicate network through a single bond was removed during the polishing simulations. We observed that higher pressure and temperature accelerated the removal of more SiO4 units. However, excessively high pressure was found to be detrimental since the heterogeneous detachment of SiO4 units led to rougher surfaces and breakage of the Si-O-Si bond, even in the bulk of the glass. Despite the lower concentration of Ce ions at the surface resulting in the lower amount of Si-O-Ce formed, the (100) ceria surface was intrinsically more reactive than (111). The different atomic-scale mechanisms of silica removal at the two ceria surfaces were described and discussed.
Collapse
Affiliation(s)
- Luca Brugnoli
- Department
of Chemical and Geological Sciences, University
of Modena and Reggio Emilia, via G. Campi 103, 41125 Modena, Italia
| | - Katsuaki Miyatani
- Innovative
Technology Laboratories, AGC Inc., Yokohama, Kanagawa 230-0045, Japan
| | - Masatoshi Akaji
- Electronics
Company, AGC Inc., Yokohama, Kanagawa 230-0045, Japan
| | - Shingo Urata
- Innovative
Technology Laboratories, AGC Inc., Yokohama, Kanagawa 230-0045, Japan
| | - Alfonso Pedone
- Department
of Chemical and Geological Sciences, University
of Modena and Reggio Emilia, via G. Campi 103, 41125 Modena, Italia
| |
Collapse
|
6
|
Dasgupta N, Ho TA, Rempe SB, Wang Y. Hydrophobic Nanoconfinement Enhances CO 2 Conversion to H 2CO 3. J Phys Chem Lett 2023; 14:1693-1701. [PMID: 36757174 DOI: 10.1021/acs.jpclett.3c00124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Understanding the formation of H2CO3 in water from CO2 is important in environmental and industrial processes. Although numerous investigations have studied this reaction, the conversion of CO2 to H2CO3 in nanopores, and how it differs from that in bulk water, has not been understood. We use ReaxFF metadynamics molecular simulations to demonstrate striking differences in the free energy of CO2 conversion to H2CO3 in bulk and nanoconfined aqueous environments. We find that nanoconfinement not only reduces the energy barrier but also reverses the reaction from endothermic in bulk water to exothermic in nanoconfined water. Also, charged intermediates are observed more often under nanoconfinement than in bulk water. Stronger solvation and more favorable proton transfer with increasing nanoconfinement enhance the thermodynamics and kinetics of the reaction. Our results provide a detailed mechanistic understanding of an important step in the carbonation process, which depends intricately on confinement, surface chemistry, and CO2 concentration.
Collapse
Affiliation(s)
- Nabankur Dasgupta
- Geochemistry Department, Sandia National Laboratories, Albuquerque, New Mexico 87185, United States
| | - Tuan A Ho
- Geochemistry Department, Sandia National Laboratories, Albuquerque, New Mexico 87185, United States
| | - Susan B Rempe
- Center for Integrated Nanotechnologies, Sandia National Laboratories, Albuquerque, New Mexico 87185, United States
| | - Yifeng Wang
- Nuclear Waste Disposal Research and Analysis Department, Sandia National Laboratories, Albuquerque, New Mexico 87185, United States
| |
Collapse
|
7
|
Zhang X, Zhu L, Hou Q, Guan J, Lu Y, Keal TW, Buckeridge J, Catlow CRA, Sokol AA. Toward a Consistent Prediction of Defect Chemistry in CeO 2. CHEMISTRY OF MATERIALS : A PUBLICATION OF THE AMERICAN CHEMICAL SOCIETY 2023; 35:207-227. [PMID: 36644213 PMCID: PMC9835833 DOI: 10.1021/acs.chemmater.2c03019] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2022] [Revised: 11/25/2022] [Indexed: 05/10/2023]
Abstract
Polarizable shell-model potentials are widely used for atomic-scale modeling of charged defects in solids using the Mott-Littleton approach and hybrid Quantum Mechanical/Molecular Mechanical (QM/MM) embedded-cluster techniques. However, at the pure MM level of theory, the calculated defect energetics may not satisfy the requirement of quantitative predictions and are limited to only certain charged states. Here, we proposed a novel interatomic potential development scheme that unifies the predictions of all relevant charged defects in CeO2 based on the Mott-Littleton approach and QM/MM electronic-structure calculations. The predicted formation energies of oxygen vacancies accompanied by different excess electron localization patterns at the MM level of theory reach the accuracy of density functional theory (DFT) calculations using hybrid functionals. The new potential also accurately reproduces a wide range of physical properties of CeO2, showing excellent agreement with experimental and other computational studies. These findings provide opportunities for accurate large-scale modeling of the partial reduction and nonstoichiometry in CeO2, as well as a prototype for developing robust interatomic potentials for other defective crystals.
Collapse
Affiliation(s)
- Xingfan Zhang
- Kathleen
Lonsdale Materials Chemistry, Department of Chemistry, University College London, LondonWC1H 0AJ, United Kingdom
| | - Lei Zhu
- Kathleen
Lonsdale Materials Chemistry, Department of Chemistry, University College London, LondonWC1H 0AJ, United Kingdom
| | - Qing Hou
- Kathleen
Lonsdale Materials Chemistry, Department of Chemistry, University College London, LondonWC1H 0AJ, United Kingdom
- Institute
of Photonic Chips, University of Shanghai
for Science and Technology, Shanghai200093, China
| | - Jingcheng Guan
- Kathleen
Lonsdale Materials Chemistry, Department of Chemistry, University College London, LondonWC1H 0AJ, United Kingdom
| | - You Lu
- Scientific
Computing Department, STFC Daresbury Laboratory, Warrington, CheshireWA4 4AD, United Kingdom
| | - Thomas W. Keal
- Scientific
Computing Department, STFC Daresbury Laboratory, Warrington, CheshireWA4 4AD, United Kingdom
| | - John Buckeridge
- School
of Engineering, London South Bank University, LondonSE1 OAA, United Kingdom
| | - C. Richard A. Catlow
- Kathleen
Lonsdale Materials Chemistry, Department of Chemistry, University College London, LondonWC1H 0AJ, United Kingdom
- School
of Chemistry, Cardiff University, Park Place, CardiffCF10 1AT, United
Kingdom
| | - Alexey A. Sokol
- Kathleen
Lonsdale Materials Chemistry, Department of Chemistry, University College London, LondonWC1H 0AJ, United Kingdom
| |
Collapse
|
8
|
Brugnoli L, Urata S, Pedone A. H 2O 2adsorption and dissociation on various CeO 2(111) surface models: a first-principles study. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2022; 34:164006. [PMID: 35130519 DOI: 10.1088/1361-648x/ac5278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Accepted: 02/07/2022] [Indexed: 06/14/2023]
Abstract
Periodic density functional theory (DFT) calculations using the hybrid PBE0 functional and atom-centered Gaussian functions as basis sets were carried out to investigate the absorption and the first steps involved in the decomposition of hydrogen peroxide (H2O2) on three different models of the ceria (111) surface. One of the models is a clean surface, and the others are defective and partially hydroxylated ceria surfaces. On the clean surface, we found that the minimum energy path of hydrogen peroxide decomposition involves a three-step process, i.e., adsorption, deprotonation, and formation of the peroxide anion, stabilized through its interaction with the surface at a Ce (IV) site, with activation barriers of less than about 0.5 eV. The subsequent formation of superoxide anions and molecular oxygen species is attributed to electron transfer from the reactants to the Ce (IV) ions underneath. On the defective surface, H2O2dissociation is an energetically downhill reaction thermodynamically driven by the healing of the O vacancies, after the reduction and decomposition of H2O2into oxygen and water. On the hydroxylated surface, H2O2is first adsorbed by forming a favorable H-bond and then undergoes heterolytic dissociation, forming two hydroxyl groups at two vicinal Ce sites.
Collapse
Affiliation(s)
- Luca Brugnoli
- Department of Chemical and Geological Sciences, University of Modena and Reggio Emilia, via G. Campi 103, 41125 Modena, Italy
| | - Shingo Urata
- Planning Division, AGC Inc., Yokohama, Kanagawa 230-0045, Japan
| | - Alfonso Pedone
- Department of Chemical and Geological Sciences, University of Modena and Reggio Emilia, via G. Campi 103, 41125 Modena, Italy
| |
Collapse
|