1
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Joshi P, Voora VK. Generalized perturbative singles corrections to the random phase approximation method: Impact on noncovalent interaction energies of closed- and open-shell dimers. J Chem Phys 2024; 160:044104. [PMID: 38258929 DOI: 10.1063/5.0180526] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Accepted: 12/29/2023] [Indexed: 01/24/2024] Open
Abstract
The post-Kohn-Sham (KS) random phase approximation (RPA) method may provide a poor description of interaction energies of weakly bonded molecules due to inherent density errors in approximate KS functionals. To overcome these errors, we develop a generalized formalism to incorporate perturbative singles (pS) corrections to the RPA method using orbital rotations as a perturbation parameter. The pS schemes differ in the choice of orbital-rotation gradient and Hessian. We propose a pS scheme termed RPA singles (RPAS)[Hartree-Fock (HF)] that uses the RPA orbital-rotation gradient and time-dependent HF Hessian. This correction reduces the errors in noncovalent interaction energies of closed- and open-shell dimers. For the open-shell dimers, the RPAS(HF) method leads to a consistent error reduction by 50% or more compared to the RPA method for the cases of hydrogen-bonding, metal-solvent, carbene-solvent, and dispersion interactions. We also find that the pS corrections are more important in error reduction compared to higher-order exchange corrections to the RPA method. Overall, for open shells, the RPAS(HF)-corrected RPA method provides chemical accuracy for noncovalent interactions and is more reliable than other perturbative schemes and dispersion-corrected density functional approximations, highlighting its importance as a reliable beyond-RPA correction.
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Affiliation(s)
- Pulkit Joshi
- Department of Chemical Sciences, Tata Institute of Fundamental Research, Homi Bhabha Road, Colaba, Mumbai 400005, India
| | - Vamsee K Voora
- Department of Chemical Sciences, Tata Institute of Fundamental Research, Homi Bhabha Road, Colaba, Mumbai 400005, India
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2
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Paul M, Thomulka T, Harnying W, Neudörfl JM, Adams CR, Martens J, Berden G, Oomens J, Meijer AJHM, Berkessel A, Schäfer M. Hydrogen Bonding Shuts Down Tunneling in Hydroxycarbenes: A Gas-Phase Study by Tandem-Mass Spectrometry, Infrared Ion Spectroscopy, and Theory. J Am Chem Soc 2023. [PMID: 37235775 DOI: 10.1021/jacs.3c01698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Hydroxycarbenes can be generated and structurally characterized in the gas phase by collision-induced decarboxylation of α-keto carboxylic acids, followed by infrared ion spectroscopy. Using this approach, we have shown earlier that quantum-mechanical hydrogen tunneling (QMHT) accounts for the isomerization of a charge-tagged phenylhydroxycarbene to the corresponding aldehyde in the gas phase and above room temperature. Herein, we report the results of our current study on aliphatic trialkylammonio-tagged systems. Quite unexpectedly, the flexible 3-(trimethylammonio)propylhydroxycarbene turned out to be stable─no H-shift to either aldehyde or enol occurred. As supported by density functional theory calculations, this novel QMHT inhibition is due to intramolecular H-bonding of a mildly acidic α-ammonio C-H bonds to the hydroxyl carbene's C-atom (C:···H-C). To further support this hypothesis, (4-quinuclidinyl)hydroxycarbenes were synthesized, whose rigid structure prevents this intramolecular H-bonding. The latter hydroxycarbenes underwent "regular" QMHT to the aldehyde at rates comparable to, e.g., methylhydroxycarbene studied by Schreiner et al. While QMHT has been shown for a number of biological H-shift processes, its inhibition by H-bonding disclosed here may serve for the stabilization of highly reactive intermediates such as carbenes, even as a mechanism for biasing intrinsic selectivity patterns.
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Affiliation(s)
- Mathias Paul
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstraße 4, Cologne 50939, Germany
| | - Thomas Thomulka
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstraße 4, Cologne 50939, Germany
| | - Wacharee Harnying
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstraße 4, Cologne 50939, Germany
| | - Jörg-Martin Neudörfl
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstraße 4, Cologne 50939, Germany
| | - Charlie R Adams
- Department of Chemistry, University of Sheffield, Sheffield S3 7HF, U.K
| | - Jonathan Martens
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, Nijmegen 6525 ED, The Netherlands
| | - Giel Berden
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, Nijmegen 6525 ED, The Netherlands
| | - Jos Oomens
- Institute for Molecules and Materials, FELIX Laboratory, Radboud University, Toernooiveld 7, Nijmegen 6525 ED, The Netherlands
- Van't Hoff Institute for Molecular Sciences, University of Amsterdam, Science Park 904, Amsterdam 1098 XH, The Netherlands
| | | | - Albrecht Berkessel
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstraße 4, Cologne 50939, Germany
| | - Mathias Schäfer
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstraße 4, Cologne 50939, Germany
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3
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Bejoy NB, Roy Chowdhury P, Patwari GN. Modulating the Roaming Dynamics for the NO Release in ortho-Nitrobenzenes. J Phys Chem Lett 2023; 14:2816-2822. [PMID: 36912644 DOI: 10.1021/acs.jpclett.3c00134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
The dynamics of NO release upon photodissociation of nitroaromatic compounds is dependent on the nature of the interaction between the NO2 group and substituent in the ortho position. A bimodal (slow and fast) translational energy distribution of the NO photofragment indicates the presence of two distinct NO elimination channels. The slow-to-fast branching ratio for the NO release is regulated by the hydrogen bonding ability of the ortho substituent and follows the order [OH > NH2 > CH3 > OCH3], indicating that the intramolecular hydrogen bonding plays a pivotal role in NO release dynamics. Further, the topology of the triplet state potential energy surface acts as a doorway to the dissociation pathway switching between the roaming and nonroaming mechanisms, with hydrogen bonding substituents (OH and NH2) favoring the roaming mechanism.
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Affiliation(s)
- Namitha Brijit Bejoy
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
| | - Prahlad Roy Chowdhury
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
| | - G Naresh Patwari
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
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4
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Phelps R, Orr-Ewing AJ. Direct Observation of the Dynamics of Ylide Solvation by Hydrogen-bond Donors Using Time-Resolved Infrared Spectroscopy. J Am Chem Soc 2022; 144:9330-9343. [PMID: 35580274 PMCID: PMC9164226 DOI: 10.1021/jacs.2c01208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The photoexcitation of α-diazocarbonyl compounds produces singlet carbene intermediates that react with nucleophilic solvent molecules to form ylides. The zwitterionic nature of these newly formed ylides induces rapid changes in their interactions with the surrounding solvent. Here, ultrafast time-resolved infrared absorption spectroscopy is used to study the ylide-forming reactions of singlet carbene intermediates from the 270 nm photoexcitation of ethyl diazoacetate in various solvents and the changes in the subsequent ylide-solvent interactions. The results provide direct spectroscopic observation of the competition between ylide formation and C-H insertion in reactions of the singlet carbene with nucleophilic solvent molecules. We further report the specific solvation dynamics of the tetrahydrofuran (THF)-derived ylide (with a characteristic IR absorption band at 1636 cm-1) by various hydrogen-bond donors and the coordination by lithium cations. Hydrogen-bonded ylide bands shift to a lower wavenumber by -19 cm-1 for interactions with ethanol, -14 cm-1 for chloroform, -10 cm-1 for dichloromethane, -9 cm-1 for acetonitrile or cyclohexane, and -16 cm-1 for Li+ coordination, allowing the time evolution of the ylide-solvent interactions to be tracked. The hydrogen-bonded ylide bands grow with rate coefficients that are close to the diffusional limit. We further characterize the specific interactions of ethanol with the THF-derived ylide using quantum chemical (MP2) calculations and DFT-based atom-centered density matrix propagation trajectories, which show preferential coordination to the α-carbonyl group. This coordination alters the hybridization character of the ylidic carbon atom, with the greatest change toward sp2 character found for lithium-ion coordination.
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Affiliation(s)
- Ryan Phelps
- School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, U.K
| | - Andrew J Orr-Ewing
- School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, U.K
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5
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Gallardo GM, Ventura DJ, Petit AS. Computationally Probing the Mechanism of the Blue-Light-Driven O–H Functionalization of Alcohols by Aryldiazoacetates: Photobasicity or Carbene Chemistry. J Org Chem 2022; 87:6212-6223. [DOI: 10.1021/acs.joc.2c00442] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Geovanny M. Gallardo
- Department of Chemistry and Biochemistry, California State University─Fullerton, Fullerton, California 92834-6866, United States
| | - Damian J. Ventura
- Department of Chemistry and Biochemistry, California State University─Fullerton, Fullerton, California 92834-6866, United States
| | - Andrew S. Petit
- Department of Chemistry and Biochemistry, California State University─Fullerton, Fullerton, California 92834-6866, United States
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6
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Priebbenow DL. Silicon‐Derived Singlet Nucleophilic Carbene Reagents in Organic Synthesis. Adv Synth Catal 2020. [DOI: 10.1002/adsc.202000279] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Daniel L. Priebbenow
- School of ChemistryThe University of Melbourne Parkville, Victoria Australia 3010
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7
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Del Bene JE, Alkorta I, Elguero J. Hydrogen bonds and halogen bonds in complexes of carbones L→C←L as electron donors to HF and ClF, for L = CO, N2, HNC, PH3, and SH2. Phys Chem Chem Phys 2020; 22:15966-15975. [DOI: 10.1039/d0cp02009e] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
MP2 and EOM-CCSD calculations have been carried out to determine the structures, binding energies, and spin-spin coupling constants of carbone complexes L→C←L with the carbone the electron donor to HF or ClF, for L = CO, N2, HNC, PH3, and SH2.
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Affiliation(s)
| | - Ibon Alkorta
- Instituto de Química Médica (IQM-CSIC)
- E-28006 Madrid
- Spain
| | - José Elguero
- Instituto de Química Médica (IQM-CSIC)
- E-28006 Madrid
- Spain
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8
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Kieser JM, Kinney ZJ, Gaffen JR, Evariste S, Harrison AM, Rheingold AL, Protasiewicz JD. Three Ways Isolable Carbenes Can Modulate Emission of NH-Containing Fluorophores. J Am Chem Soc 2019; 141:12055-12063. [PMID: 31322901 DOI: 10.1021/jacs.9b04864] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Fluorescent molecules and materials that exhibit emission changes in response to analytes are of great interest across multiple disciplines. Herein, we investigate the response of NH-containing fluorophores carbazole and 2-phenylbenzimidazole (Ph-BIM) with two representative isolable singlet carbenes. Specifically, N-heterocyclic carbene 1,3-bis(2,6-diisopropylphenyl)imidazol-2-ylidene (IPr) and cyclic (alkyl)(amino)carbene (2,6-diisopropylphenyl)-4,4-diethyl-2,2-dimethyl-pyrrolidin-5-ylidene (EtCAAC) were discovered to afford three different types of reaction products with carbazole and Ph-BIM. Depending on the reaction pair, hydrogen bonding (1), NH-insertion (2,3), or proton transfer (4) products can be isolated, each displaying variable photophysical responses. These products have been structurally authenticated by single crystal X-ray diffraction and NMR spectrometric methods. Studies of the solution state behavior of 1-4 reveals that these adducts are labile and can reversibly dissociate to free carbenes and fluorophores to varying extents. These equilibria produce concentration dependent solution state behavior as identified and quantified via UV-visible absorption, emission, 1H DOSY, and NMR spectroscopic measurements.
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Affiliation(s)
- Jerod M Kieser
- Department of Chemistry , Case Western Reserve University , 2080 Adelbert Road , Cleveland , Ohio 44106 , United States
| | - Zacharias J Kinney
- Department of Chemistry , Case Western Reserve University , 2080 Adelbert Road , Cleveland , Ohio 44106 , United States
| | - Joshua R Gaffen
- Department of Chemistry , Case Western Reserve University , 2080 Adelbert Road , Cleveland , Ohio 44106 , United States
| | - Sloane Evariste
- Department of Chemistry , Case Western Reserve University , 2080 Adelbert Road , Cleveland , Ohio 44106 , United States
| | - Alexandra M Harrison
- Department of Chemistry , Case Western Reserve University , 2080 Adelbert Road , Cleveland , Ohio 44106 , United States
| | - Arnold L Rheingold
- Department of Chemistry and Biochemistry , University of California, San Diego , La Jolla , California 92093 , United States
| | - John D Protasiewicz
- Department of Chemistry , Case Western Reserve University , 2080 Adelbert Road , Cleveland , Ohio 44106 , United States
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9
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Ghafarian Shirazi R, Neese F, Pantazis DA, Bistoni G. Physical Nature of Differential Spin-State Stabilization of Carbenes by Hydrogen and Halogen Bonding: A Domain-Based Pair Natural Orbital Coupled Cluster Study. J Phys Chem A 2019; 123:5081-5090. [PMID: 30938995 PMCID: PMC6727382 DOI: 10.1021/acs.jpca.9b01051] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2019] [Revised: 03/21/2019] [Indexed: 11/28/2022]
Abstract
The variation in the singlet-triplet energy gap of diphenylcarbene (DPC) upon interaction with hydrogen (water and methanol) or halogen bond (XCF3, X = Cl, Br, I) donors to form van der Waals (vdW) complexes is investigated in relation to the electrostatic and dispersion components of such intermolecular interactions. The domain-based local pair natural orbital coupled cluster method, DLPNO-CCSD(T), is used for calculating accurate single-triplet energy gaps and interaction energies for both spin states. The local energy decomposition scheme is used to provide an accurate quantification to the various interaction energy components at the DLPNO-CCSD(T) level. It is shown that the formation of vdW adducts stabilizes the singlet state of DPC, and in the case of water, methanol, and ICF3, it reverses the ground state from triplet to singlet. Electrostatic interactions are significant in both spin states, but preferentially stabilize the singlet state. For methanol and ClCF3, London dispersion forces have the opposite effect, stabilizing preferentially the triplet state. The quantification of the energetic components of the interactions through the local energy decomposition analysis correlates well with experimental findings and provides the basis for more elaborate treatments of microsolvation in carbenes.
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Affiliation(s)
- Reza Ghafarian Shirazi
- Max-Planck-Institut
für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
- Fakultät
für Chemie und Biochemie, Ruhr-Universität Bochum, 44780 Bochum, Germany
| | - Frank Neese
- Max-Planck-Institut
für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Dimitrios A. Pantazis
- Max-Planck-Institut
für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Giovanni Bistoni
- Max-Planck-Institut
für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
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10
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Altun A, Saitow M, Neese F, Bistoni G. Local Energy Decomposition of Open-Shell Molecular Systems in the Domain-Based Local Pair Natural Orbital Coupled Cluster Framework. J Chem Theory Comput 2019; 15:1616-1632. [PMID: 30702888 PMCID: PMC6728066 DOI: 10.1021/acs.jctc.8b01145] [Citation(s) in RCA: 67] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
![]()
Local
energy decomposition (LED) analysis decomposes the interaction
energy between two fragments calculated at the domain-based local
pair natural orbital CCSD(T) (DLPNO-CCSD(T)) level of theory into
a series of chemically meaningful contributions and has found widespread
applications in the study of noncovalent interactions. Herein, an
extension of this scheme that allows for the analysis of interaction
energies of open-shell molecular systems calculated at the UHF-DLPNO-CCSD(T)
level is presented. The new scheme is illustrated through applications
to the CH2···X (X = He, Ne, Ar, Kr, and
water) and heme···CO interactions in the low-lying
singlet and triplet spin states. The results are used to discuss the
mechanism that governs the change in the singlet–triplet energy
gap of methylene and heme upon adduct formation.
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Affiliation(s)
- Ahmet Altun
- Max-Planck-Institut für Kohlenforschung , Kaiser-Wilhelm-Platz 1 , D-45470 Mülheim an der Ruhr , Germany
| | - Masaaki Saitow
- Department of Chemistry, Graduate School of Science , Nagoya University , 1-5 Chikusa-ku , 464-8602 Nagoya , Japan
| | - Frank Neese
- Max-Planck-Institut für Kohlenforschung , Kaiser-Wilhelm-Platz 1 , D-45470 Mülheim an der Ruhr , Germany
| | - Giovanni Bistoni
- Max-Planck-Institut für Kohlenforschung , Kaiser-Wilhelm-Platz 1 , D-45470 Mülheim an der Ruhr , Germany
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11
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Lin H, Meng L, Li X, Zeng Y, Zhang X. Comparison of pnicogen and tetrel bonds in complexes containing CX2 carbenes (X = F, Cl, Br, OH, OMe, NH2, and NMe2). NEW J CHEM 2019. [DOI: 10.1039/c9nj03397a] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The similarities and differences of pnicogen and tetrel bonds formed by carbenes CX2 with H3AsO and H3SiCN were investigated by carrying out ab initio calculations in association with topological analysis of electron density.
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Affiliation(s)
- Hui Lin
- College of Chemistry and Material Science
- Hebei Normal University
- Shijiazhuang
- P. R. China
| | - Lingpeng Meng
- College of Chemistry and Material Science
- Hebei Normal University
- Shijiazhuang
- P. R. China
- National Demonstration Center for Experimental Chemistry
| | - Xiaoyan Li
- College of Chemistry and Material Science
- Hebei Normal University
- Shijiazhuang
- P. R. China
- National Demonstration Center for Experimental Chemistry
| | - Yanli Zeng
- College of Chemistry and Material Science
- Hebei Normal University
- Shijiazhuang
- P. R. China
- National Demonstration Center for Experimental Chemistry
| | - Xueying Zhang
- College of Chemistry and Material Science
- Hebei Normal University
- Shijiazhuang
- P. R. China
- National Demonstration Center for Experimental Chemistry
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12
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Alkorta I, Elguero J. Interaction ofN-Heterocyclic Carbenes and Simple Carbenes with Small Molecules (One to Three Atoms) Excluding Metals: Formation of Covalent C-X Bonds. J Heterocycl Chem 2018. [DOI: 10.1002/jhet.3331] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Ibon Alkorta
- Instituto de Química Médica; CSIC; Juan de la Cierva, 3 Madrid E-28006 Spain
| | - José Elguero
- Instituto de Química Médica; CSIC; Juan de la Cierva, 3 Madrid E-28006 Spain
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13
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Ghafarian Shirazi R, Neese F, Pantazis DA. Accurate Spin-State Energetics for Aryl Carbenes. J Chem Theory Comput 2018; 14:4733-4746. [DOI: 10.1021/acs.jctc.8b00587] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Reza Ghafarian Shirazi
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Frank Neese
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Dimitrios A. Pantazis
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
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14
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15
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Del Bene JE, Alkorta I, Elguero J. Carbenes as Electron-Pair Donors for P⋅⋅⋅C Pnicogen Bonds. Chemphyschem 2017; 18:1597-1610. [DOI: 10.1002/cphc.201700187] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2017] [Revised: 03/24/2017] [Indexed: 11/11/2022]
Affiliation(s)
- Janet E. Del Bene
- Department of Chemistry; Youngstown State University; Youngstown Ohio 44555 USA
| | - Ibon Alkorta
- Instituto de Química Médica ( IQM-CSIC); Juan de la Cierva, 3 E-28006 Madrid Spain
| | - José Elguero
- Instituto de Química Médica ( IQM-CSIC); Juan de la Cierva, 3 E-28006 Madrid Spain
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