Benchmarking Density Functionals for Chemical Bonds of Gold

Dirhodium(II) complex catalyzed dehydrosilylation of styrenes: theoretical investigations on the mechanism, selectivity, and ligand effects

The dirhodium(II) complexes with bridging phosphine and OAc ligands showed high reactivity and selectivities in olefin dehydrosilylation. In order to determine the structure of the actual catalyst which cannot be determined experimentally, the geometries of the dirhodium catalyst, the detailed catalytic mechanism, and the stereo- and chemo-selectivities of the title reaction were studied using DFT calculations. The results showed that one OAc group is monodentate and the other is bidentate in the dirhodium catalyst C'. The determined catalytic cycle consists of four processes: Rh-H bond activation in C', Si-H bond activation in alkoxysilane, alkylene insertion into the Rh-Si bond, followed by β-H elimination or σ-metathesis reaction. Among them, the alkylene insertion process is the rate-determining step. The stereoselectivity of the title reaction is controlled by the steric effect and orbital interactions between the alkyene and dirhodium catalysts in the β-H elimination process. The chemoselectivity is regulated by the presence of the axial ligand in the dirhodium catalyst, when there is an axial ligand coordinated to the Rh atom, E-alkene is the main product, whereas alkane would be obtained in the absence of an axial ligand. Our work determines the structure of the actual catalyst, and provides explanations and predictions for the activity, and chemo- and stereo-selectivity control of olefin dehydrosilylation.

Regiodivergent Synthesis of 4- and 5-Sulfenyl Oxazoles from Alkynyl Thioethers

The regiodivergent synthesis of 4- and 5-sulfenyl oxazoles from 1,4,2-dioxazoles and alkynyl thioethers has been achieved. Gold-catalysed conditions are used to favour the formation of 5-sulfenyl oxazoles via β-selective attack of the nitrenoid relative to the sulfenyl group. In contrast, 4-sulfenyl oxazoles are formed by α-selective reaction under Brønsted acid conditions from the same substrates. The nature of stabilising gold-sulfur interactions have been investigated by natural bond orbital analysis, showing that the S→Au interactions are significantly stronger in the intermediate that favours the 5-sulfenyl oxazoles. A kinetic survey identifies catalyst inhibition processes. This study into the regiodivergent methods includes the development of telescoped annulation-oxidation protocols for regioselective access to oxazole sulfoxides and sulfones.

A New Gold(III) Complex, TGS 703, Shows Potent Anti-Inflammatory Activity in Colitis via the Enzymatic and Non-Enzymatic Antioxidant System-An In Vitro, In Silico, and In Vivo Study

Inflammatory bowel diseases (IBD) and their main representatives, Crohn's disease and ulcerative colitis, are worldwide health-care problems with constantly increasing frequency and still not fully understood pathogenesis. IBD treatment involves drugs such as corticosteroids, derivatives of 5-aminosalicylic acid, thiopurines, and others, with the goal to achieve and maintain remission of the disease. Nowadays, as our knowledge about IBD is continually growing, more specific and effective therapies at the molecular level are wanted. In our study, we tested novel gold complexes and their potential effect on inflammation and IBD in vitro, in silico, and in vivo. A series of new gold(III) complexes (TGS 404, 512, 701, 702, and 703) were designed and screened in the in vitro inflammation studies. In silico modeling was used to study the gold complexes' structure vs. their activity and stability. Dextran sulphate sodium (DSS)-induced mouse model of colitis was employed to characterize the anti-inflammatory activity in vivo. Lipopolysaccharide (LPS)-stimulated RAW264.7 cell experiments proved the anti-inflammatory potential of all tested complexes. Selected on the bases of in vitro and in silico analyses, TGS 703 significantly alleviated inflammation in the DSS-induced mouse model of colitis, which was confirmed by a statistically significant decrease in the macro- and microscopic score of inflammation. The mechanism of action of TGS 703 was linked to the enzymatic and non-enzymatic antioxidant systems. TGS 703 and other gold(III) complexes present anti-inflammatory potential and may be applied therapeutically in the treatment of IBD.

The nature of stability and adsorption interactions of binary Au-Li clusters with bridge adsorption structures

Earlier findings have confirmed that CO molecules have propensities to adsorb on low-coordinated gold atoms (top sites) of Au-based clusters, which can be treated by the Blyholder model wherein the σ donation and π-back donation take place. Here, the structural features and stability of (AuLi)_n (n = 1-9) clusters were first analyzed using the GA-DFT method. The new adsorption modes, vibration frequencies and electronic interactions for Au-Li clusters with CO were investigated in detail. More excitingly, we found that CO prefers to adsorb on the bridge sites of the Au-Li clusters rather than on the top sites, which are much lower in energies than the top adsorptions, and the C-O stretching frequencies are also red-shifted. AIMD simulations show that the adsorption structures still have good thermal stability at 500 K. The density of states reveals that the electronic structures of Au-Li clusters have excellent stability for the bridge adsorptions of CO molecules. The ETS-NOCV analysis and NPA charges show that the direction of charge flow is from Au-Li clusters → CO. Our study provides an idea to elucidate the new adsorption mechanism on Au-Li clusters and the connection between the geometries and reaction properties.

On the Electron-Induced Reactions of (CH3)AuP(CH3)3: A Combined UHV Surface Science and Gas-Phase Study

Focused-electron-beam-induced deposition (FEBID) is a powerful nanopatterning technique where electrons trigger the local dissociation of precursor molecules, leaving a deposit of non-volatile dissociation products. The fabrication of high-purity gold deposits via FEBID has significant potential to expand the scope of this method. For this, gold precursors that are stable under ambient conditions but fragment selectively under electron exposure are essential. Here, we investigated the potential gold precursor (CH3)AuP(CH3)3 using FEBID under ultra-high vacuum (UHV) and spectroscopic characterization of the corresponding metal-containing deposits. For a detailed insight into electron-induced fragmentation, the deposit's composition was compared with the fragmentation pathways of this compound through dissociative ionization (DI) under single-collision conditions using quantum chemical calculations to aid the interpretation of these data. Further comparison was made with a previous high-vacuum (HV) FEBID study of this precursor. The average loss of about 2 carbon and 0.8 phosphor per incident was found in DI, which agreed well with the carbon content of the UHV FEBID deposits. However, the UHV deposits were found to be as good as free of phosphor, indicating that the trimethyl phosphate is a good leaving group. Differently, the HV FEBID experiments showed significant phosphor content in the deposits.

Density-functional tight-binding for phosphine-stabilized nanoscale gold clusters

We report a parameterization of the second-order density-functional tight-binding (DFTB2) method for the quantum chemical simulation of phosphine-ligated nanoscale gold clusters, metalloids, and gold surfaces. Our parameterization extends the previously released DFTB2 "auorg" parameter set by connecting it to the electronic parameter of phosphorus in the "mio" parameter set. Although this connection could technically simply be accomplished by creating only the required additional Au-P repulsive potential, we found that the Au 6p and P 3d virtual atomic orbital energy levels exert a strong influence on the overall performance of the combined parameter set. Our optimized parameters are validated against density functional theory (DFT) geometries, ligand binding and cluster isomerization energies, ligand dissociation potential energy curves, and molecular orbital energies for relevant phosphine-ligated Au n clusters (n = 2-70), as well as selected experimental X-ray structures from the Cambridge Structural Database. In addition, we validate DFTB simulated far-IR spectra for several phosphine- and thiolate-ligated gold clusters against experimental and DFT spectra. The transferability of the parameter set is evaluated using DFT and DFTB potential energy surfaces resulting from the chemisorption of a PH3 molecule on the gold (111) surface. To demonstrate the potential of the DFTB method for quantum chemical simulations of metalloid gold clusters that are challenging for traditional DFT calculations, we report the predicted molecular geometry, electronic structure, ligand binding energy, and IR spectrum of Au108S24(PPh3)16.

Theoretical investigation of the ORR on boron-silicon nanotubes (B-SiNTs) as acceptable catalysts in fuel cells

Here, the potential of boron doped silicon nanotubes (7, 0) as ORR catalysts is examined. Acceptable paths for the ORR on studied catalysts are examined through DFT. The optimum mechanism of the ORR on the surface of B2-SiNT (7, 0) is shown. The ORR on the surface of B2-SiNTs (7, 0) can continue through LH and ER mechanisms. The calculated beginning voltage for the ORR on B2-SiNTs (7, 0) is 0.37 V and it is smaller than the beginning voltage (0.45 V) for platinum-based catalysts. In the acidic solution the beginning voltage for the oxygen reduction process can be evaluated to be 0.97 V, which corresponds to 0.37 V as a minimum overvoltage for the ORR. The B2-SiNTs (7, 0) are suggested as an ORR catalyst in acidic environments.

Luminescence properties and optimized structural conformations of the S0, S1 and T1 states of a tetranuclear formamidinate complex based on AuI and AgI metal ions

N,N′-Bis(pyridin-4-yl)formamidine (4-pyfH) was reacted with AuI and AgI metal salts to form a novel tetranuclear complex, tetrakis[μ-N,N′-bis(pyridin-4-yl)formamidinato]digold(I)disilver(I), [Ag2Au2(C11H9N4)2] or [Au x Ag4–x (4-pyf)4] (x = 0–4), 1, which is supported by its metallophilicity. Due to the potential permutation of the coordinated metal ions, six different canonical structures of 1 can be obtained. Complex 1 shows an emission at 501 nm upon excitation at 375 nm in the solid state and an emission at 438 nm upon excitation at 304 nm when dispersed in methanol. Time-dependent density functional theory (TD-DFT) calculations confirmed that these emissions can be ascribed to metal-to-ligand charge transfer (MLCT) processes. Moreover, the calculations of the optimized structural conformations of the S0 ground state, and the S1 and T1 excited states are discussed and suggest a distorted planar conformation for the tetranuclear Au2Ag2 complex.

The Metal Hydride Problem of Computational Chemistry: Origins and Consequences

Formation and breaking of metal-hydrogen bonds are central to many important catalytic processes such as transition-metal catalyzed ammonia synthesis, hydrogenation reactions, and water splitting, and thus, they require an adequate theoretical description. We studied a data set of all 30 M-H and 30 M⁺-H bonds of the 3d, 4d, and 5d transition series; 50 of these systems have experimentally known bond dissociation enthalpies (BDE). To probe both the limit of low and high coordination number, we also studied a data set of 19 ML _nH complexes. The BDEs were computed using Hartree-Fock (HF), MP2, CCSD, CCSD(T), and 10 diverse density functionals including local, GGA, hybrid GGA, meta hybrid, range-separated, and double hybrids. Our ten most important findings are as follows: (1) HF fails completely to describe the metal hydrogen bond due to its lack of static correlation; (2) this makes post-HF methods such as MP2 and even CCSD(T) perform worse than many density functionals; (3) DFT requires much more HF exchange (∼35% on average) to describe the pure M-H bonds than to describe other metal ligand bonds (0-20%); (4) we design a test to determine if self-interaction error (SIE) is important by correlating DFT errors against a one-electron SIE metric; (5) we show that SIE correlates directly with the DFT errors and thus causes most of the problem; (6) HF-DFT cannot handle these systems because the HF method is too pathological already at the density level; (7) instead, we define and apply a simple metric of electronic abnormality as the difference in PBE energy computed at the self-consistent PBE0 and SVWN densities, and this metric gives appropriate spread and effectively captures density-derived errors; (8) the low electronegativity of the metal enforces a diffuse hydride-like electron density, which make the metal hydrides primary examples of many-electron systems exhibiting SIE already at equilibrium geometries; (9) in the coordinatively saturated ML _nH systems, much less HF exchange is required; i.e., the HF exchange requirements vary drastically with coordination number. Accordingly, DFT is unbalanced for any catalytic process involving both M-H and M-L bonds and changing coordination numbers; (10) importantly, the range-separated and double-hybrid functionals CAM-B3LYP and B2PLYP alone perform well for both M-H and M-L systems and in both limits of low and high coordination number, and at least as well as CCSD(T). This lends hope to a balanced treatment of computational chemistry for all types of M-L bonds at variable coordination number, as required for real catalytic reactions.

Analysis of the conformational properties of amine ligands at the gold/water interface with QM, MM and QM/MM simulations

We describe a strategy of integrating quantum mechanical (QM), hybrid quantum mechanical/molecular mechanical (QM/MM) and MM simulations to analyze the physical properties of a solid/water interface.