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Harariya MS, Gogoi R, Goswami A, Sharma AK, Jindal G. Is Enol Always the Culprit? The Curious Case of High Enantioselectivity in a Chiral Rh(II) Complex Catalyzed Carbene Insertion Reaction. Chemistry 2023; 29:e202301910. [PMID: 37665257 DOI: 10.1002/chem.202301910] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Revised: 09/04/2023] [Accepted: 09/04/2023] [Indexed: 09/05/2023]
Abstract
The mechanism of Rh2 (S-NTTL)4 catalyzed carbene insertion into C(3)-H of indole is investigated using DFT methods. Since the commonly accepted enol mechanism cannot account for enantioinduction, a concerted oxocarbenium pathway was proposed in an earlier work using a model catalyst. However, after considering the full catalytic system, this study finds that akin to other reactions, here, too, the enol pathway is of lower energy, which now naturally raises a conundrum regarding the mode of chiral induction. Herein, a new water promoted mechanistic pathway involving a metal-associated enol intermediate hydrogen bonding and stereochemical model are proposed to solve this puzzle. It is shown how the catalyst bowl-shaped structure along with substrate-catalyst binding is crucial for achieving high levels of enantioselectivity. A stereodetermining water-assisted proton transfer is proposed and confirmed through deuterium-labeling experiments. The water molecules are held together by H-bonding interactions with the carboxylate ligands that is reminiscent of enzyme catalysis. Although several previous studies have aimed at understanding the mechanism of metal catalyzed carbene insertion reactions, the origin of high stereoinduction especially with chiral metal complexes remains unclear, and till date there is no transition state model that can explain the high enantioselectivity with such chiral Rh complexes. The metal-associated enol pathway is currently underrepresented in catalytic cycles and may play a crucial role in catalyst design. Since the enol pathway is commonly adopted in other metal-catalyzed X-H insertion reactions involving a diazoester, the presented results are not specific to the current reaction. Therefore, this study could provide the direction for achieving high levels of enantioselectivity which is otherwise difficult to achieve with a single metal catalyst.
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Affiliation(s)
- Mahesh S Harariya
- Department of Organic Chemistry, Indian Institute of Science, Bangalore, Karnataka, 560012, India
| | - Romin Gogoi
- Department of Organic Chemistry, Indian Institute of Science, Bangalore, Karnataka, 560012, India
| | - Anubhav Goswami
- Department of Organic Chemistry, Indian Institute of Science, Bangalore, Karnataka, 560012, India
| | - Akhilesh K Sharma
- Institute of Chemical Research of Catalonia (ICIQ), Avgda. Països Catalans, 1643007, Tarragona, 560012, Spain
| | - Garima Jindal
- Department of Organic Chemistry, Indian Institute of Science, Bangalore, Karnataka, 560012, India
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2
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Cheng Q, Yan W, Li T, Jiao Y, Tang Z. Insights into the regioselectivity and diastereoselectivity of the Nazarov cyclization of 3-alkenyl-2-indolylmethanol with tryptophol. Org Chem Front 2023. [DOI: 10.1039/d2qo01896a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
Abstract
Density functional theory calculations of Nazarov cyclizations showed that 3-alkenyl-2-indolylmethanol and tryptophol formed binary and ternary complexes, respectively, in the presence and absence of H2O to produce C–N and C–C products.
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Affiliation(s)
- Qi Cheng
- School of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan, 411201, China
| | - Wenxin Yan
- School of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan, 411201, China
| | - Tian Li
- School of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan, 411201, China
| | - Yinchun Jiao
- School of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan, 411201, China
- Key Laboratory of Theoretical Organic Chemistry and Functional Molecular, Ministry of Education, Hunan Provincial Key Laboratory of Controllable Preparation and Functional Application of Fine Polymers, Hunan University of Science and Technology, Xiangtan, 411201, China
| | - Zilong Tang
- School of Chemistry and Chemical Engineering, Hunan University of Science and Technology, Xiangtan, 411201, China
- Key Laboratory of Theoretical Organic Chemistry and Functional Molecular, Ministry of Education, Hunan Provincial Key Laboratory of Controllable Preparation and Functional Application of Fine Polymers, Hunan University of Science and Technology, Xiangtan, 411201, China
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3
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Zhang X, Zhang SQ, Li Q, Xiao F, Yue Z, Hong X, Lei X. Computation-Guided Development of the "Click" ortho-Quinone Methide Cycloaddition with Improved Kinetics. Org Lett 2020; 22:2920-2924. [PMID: 32255637 DOI: 10.1021/acs.orglett.0c00578] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We report here a deep mechanistic study of the "click" ortho-quinone methide (oQM) cycloaddition between ortho-quinolinone quinone methide (oQQM) and thio-vinyl ether (TV), named as TQ-ligation. DFT calculations revealed the unexpected fact that dehydration of oQQM precursors is the rate-determining step of this transformation, and two highly reactive oQQM precursors were predicted. Guided by the calculations, a new "click" oQM cycloaddition which shows significantly improved kinetics and remarkable efficiency on protein labeling was developed.
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Affiliation(s)
- Xiaoyun Zhang
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, Department of Chemical Biology, College of Chemistry and Molecular Engineering, Synthetic and Functional Biomolecules Center, and Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China
| | - Shuo-Qing Zhang
- Department of Chemistry, Zhejiang University, 38 Zheda Road, Hangzhou 310027, China
| | - Qiang Li
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, Department of Chemical Biology, College of Chemistry and Molecular Engineering, Synthetic and Functional Biomolecules Center, and Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China
| | - Fan Xiao
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, Department of Chemical Biology, College of Chemistry and Molecular Engineering, Synthetic and Functional Biomolecules Center, and Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China
| | - Zongwei Yue
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, Department of Chemical Biology, College of Chemistry and Molecular Engineering, Synthetic and Functional Biomolecules Center, and Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China
| | - Xin Hong
- Department of Chemistry, Zhejiang University, 38 Zheda Road, Hangzhou 310027, China
| | - Xiaoguang Lei
- Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, Department of Chemical Biology, College of Chemistry and Molecular Engineering, Synthetic and Functional Biomolecules Center, and Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China
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4
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Li F, Zhang JZ, Xia F. How CuCl and CuCl 2 Insert into C-N Bonds of Diazo Compounds: An Electronic Structure and Mechanistic Study. J Phys Chem A 2020; 124:2029-2035. [PMID: 32083869 DOI: 10.1021/acs.jpca.9b11991] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
The transition-metal Cu catalysts CuCl and CuCl2 have been widely employed to catalyze a series of chemical reactions with diazo compounds because of their high efficiency and selectivity. However, how to yield the active Cu carbene species from the Cu catalysts and diazo compounds still remains unclear. In this work, we performed a comprehensive theoretical investigation on the electronic structures of CuCl and CuCl2 in solution. The results indicate that the most stable structures for CuCl and CuCl2 are dimer and monomer, respectively. The C-N bond insertion of aryldiazoacetate by CuCl yields a stable bimetallic carbene species, which differs from the monometallic carbene generated from CuCl2.
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Affiliation(s)
- Fengyu Li
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China
| | - John Zenghui Zhang
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China.,NYU-ECNU Center for Computational Chemistry at New York University Shanghai, East China Normal University, Shanghai 200062, China
| | - Fei Xia
- Shanghai Engineering Research Center of Molecular Therapeutics and New Drug Development, School of Chemistry and Molecular Engineering, East China Normal University, Shanghai 200062, China.,NYU-ECNU Center for Computational Chemistry at New York University Shanghai, East China Normal University, Shanghai 200062, China
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Carreras L, Franconetti A, Grabulosa A, Frontera A, Vidal-Ferran A. Selective functionalisation of aromatic alcohols with supramolecularly regulated gold(i) catalysts. Org Chem Front 2020. [DOI: 10.1039/d0qo00416b] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Phosphite-based Au(i) catalytic systems containing an array of structurally diverse polyether-based regulation sites were designed and synthesised.
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Affiliation(s)
- Lucas Carreras
- Institute of Chemical Research of Catalonia (ICIQ)
- 43007 Tarragona
- Spain
| | - Antonio Franconetti
- Departament de Química
- Universitat de les Illes Balears
- 07122 Palma de Mallorca
- Spain
| | - Arnald Grabulosa
- Section of Inorganic Chemistry
- Department of Inorganic and Organic Chemistry
- University of Barcelona
- 08028 Barcelona
- Spain
| | - Antonio Frontera
- Departament de Química
- Universitat de les Illes Balears
- 07122 Palma de Mallorca
- Spain
| | - Anton Vidal-Ferran
- Institute of Chemical Research of Catalonia (ICIQ)
- 43007 Tarragona
- Spain
- Section of Inorganic Chemistry
- Department of Inorganic and Organic Chemistry
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Conformer-related pathways in cycloaddition of vinylaziridines and alkynes catalyzed by rhodium(I)-complex. Chem Phys Lett 2018. [DOI: 10.1016/j.cplett.2018.10.011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Herndon JW. The chemistry of the carbon-transition metal double and triple bond: Annual survey covering the year 2017. Coord Chem Rev 2018. [DOI: 10.1016/j.ccr.2018.08.007] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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Chen X, Merrett JT, Hong Chan PW. Gold-Catalyzed Formal [4 + 2] Cycloaddition of 5-(Ethynylamino)pent-2-yn-1-yl Esters to 1,2,3,5-Tetrahydrobenzo[g]quinolines. Org Lett 2018; 20:1542-1545. [DOI: 10.1021/acs.orglett.8b00267] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Xiaoyu Chen
- School of Chemistry, Monash University, Clayton, Victoria 3800, Australia
| | | | - Philip Wai Hong Chan
- School of Chemistry, Monash University, Clayton, Victoria 3800, Australia
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom
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