1
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Egbaria N, Agbaria M, Borin VA, Hoffman RE, Bogoslavsky B, Schapiro I, Nairoukh Z. The Conformational Behaviour of Fluorinated Tetrahydrothiopyran. Chemistry 2024; 30:e202402260. [PMID: 38989892 DOI: 10.1002/chem.202402260] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Revised: 07/10/2024] [Accepted: 07/11/2024] [Indexed: 07/12/2024]
Abstract
We present a comprehensive study on the conformational behavior of diversely substituted 4-fluorotetrahydrothiopyran derivatives. Through quantum chemical simulations including DFT as well as NBO and NPA analysis, we elucidate the pivotal role of electrostatic interactions, occasionally complemented by hyperconjugative interactions, in stabilizing axial fluorine conformers. Less polar conformers were occasionally obtained, attributed to the interplay of electrostatic and hyperconjugative interactions. Experimental validation through NMR spectroscopy aligns with the computational analysis, thus providing a coherent understanding of the structural dynamics of these compounds.
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Affiliation(s)
- Nwar Egbaria
- Institute of Chemistry, Casali Center of Applied Chemistry, The Hebrew University of Jerusalem, 9190401, Jerusalem, Israel
| | - Mohamed Agbaria
- Institute of Chemistry, Casali Center of Applied Chemistry, The Hebrew University of Jerusalem, 9190401, Jerusalem, Israel
| | - Veniamin A Borin
- Fritz Haber Center for Molecular Dynamics Research, Institute of Chemistry, The Hebrew University of, Jerusalem, 9190401, Jerusalem, Israel
| | - Roy E Hoffman
- Institute of Chemistry, Casali Center of Applied Chemistry, The Hebrew University of Jerusalem, 9190401, Jerusalem, Israel
| | - Benny Bogoslavsky
- Institute of Chemistry, Casali Center of Applied Chemistry, The Hebrew University of Jerusalem, 9190401, Jerusalem, Israel
| | - Igor Schapiro
- Fritz Haber Center for Molecular Dynamics Research, Institute of Chemistry, The Hebrew University of, Jerusalem, 9190401, Jerusalem, Israel
| | - Zackaria Nairoukh
- Institute of Chemistry, Casali Center of Applied Chemistry, The Hebrew University of Jerusalem, 9190401, Jerusalem, Israel
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2
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Otogo N'Nang E, Gallard JF, Champy P, Le Pogam P, Beniddir MA. Density functional theory-nuclear magnetic resonance-validated full structure elucidation of theionbrunonine C, an unstable N-oxide theionbrunonine from Mostuea brunonis. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2022; 60:1178-1184. [PMID: 35368097 DOI: 10.1002/mrc.5271] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Revised: 03/23/2022] [Accepted: 03/30/2022] [Indexed: 06/14/2023]
Abstract
The structure elucidation of theionbrunonine C, a thioether-bridged dimeric monoterpene indole alkaloid (MIA), and more generally, one of the very few sulfur-containing MIA, is reported after its isolation from Mostuea brunonis (Gelsemiaceae). This unstable structure had already been targeted for isolation in our former, molecular network-guided, investigation of this plant, but this compound had degraded before sufficient spectroscopic data could have been acquired for a complete structure assignment. With this constraint in mind, the rapid acquisition of nuclear magnetic resonance (NMR) data enabled retrieving sufficient spectroscopic information for full structure elucidation, although from a partial set of spectroscopic information (1 H and 13 C NMR; COSY, HSQC, and HMBC). In conjunction with biosynthetic considerations, the cursory examination of 13 C NMR data unambiguously defined the complete stereostructure of 1, as further supported by density functional theory (DFT)-NMR calculations and subsequent DP4 probability score.
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Affiliation(s)
- Elvis Otogo N'Nang
- Équipe "Chimie des substances naturelles" BioCIS, CNRS, Université Paris-Saclay, Châtenay-Malabry, France
- Laboratoire de chimie des substances naturelles, Département Science Fondamentale de l'Ingénieur (INSAB), Université des Sciences et Techniques de Masuku, Franceville, Gabon
| | - Jean-François Gallard
- Institut de Chimie des Substances Naturelles, CNRS, ICSN UPR 2301, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Pierre Champy
- Équipe "Chimie des substances naturelles" BioCIS, CNRS, Université Paris-Saclay, Châtenay-Malabry, France
| | - Pierre Le Pogam
- Équipe "Chimie des substances naturelles" BioCIS, CNRS, Université Paris-Saclay, Châtenay-Malabry, France
| | - Mehdi A Beniddir
- Équipe "Chimie des substances naturelles" BioCIS, CNRS, Université Paris-Saclay, Châtenay-Malabry, France
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3
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Vallejos González V, Podlech J. Oxidation of Dithia Compounds: Comparative Experimental and Theoretical Studies on 1,3‐Bis(methylthio)propane, Bis(methylthio)methane, and
meso
‐4,6‐Dimethyl‐1,3‐dithiane. European J Org Chem 2021. [DOI: 10.1002/ejoc.202100940] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Victorino Vallejos González
- Institut für Organische Chemie Karlsruher Institut für Technologie (KIT) 76131 Karlsruhe Fritz-Haber-Weg 6 Germany
| | - Joachim Podlech
- Institut für Organische Chemie Karlsruher Institut für Technologie (KIT) 76131 Karlsruhe Fritz-Haber-Weg 6 Germany
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4
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Jung ST, Nickisch R, Reinsperger T, Luy B, Podlech J. Stereoelectronic effects: Perlin effects in cyclohexane‐derived compounds. J PHYS ORG CHEM 2020. [DOI: 10.1002/poc.4165] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Sebastian T. Jung
- Institute for Organic Chemistry Karlsruher Institute of Technology (KIT) Karlsruhe Germany
| | - Roman Nickisch
- Institute for Organic Chemistry Karlsruher Institute of Technology (KIT) Karlsruhe Germany
| | - Tony Reinsperger
- Institute for Organic Chemistry Karlsruher Institute of Technology (KIT) Karlsruhe Germany
- Institute for Biological Interfaces 4—Magnetic Resonance Karlsruher Institute of Technology (KIT) Eggenstein‐Leopoldshafen Germany
| | - Burkhard Luy
- Institute for Organic Chemistry Karlsruher Institute of Technology (KIT) Karlsruhe Germany
- Institute for Biological Interfaces 4—Magnetic Resonance Karlsruher Institute of Technology (KIT) Eggenstein‐Leopoldshafen Germany
| | - Joachim Podlech
- Institute for Organic Chemistry Karlsruher Institute of Technology (KIT) Karlsruhe Germany
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5
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Jung ST, Podlech J. Development of a Robust Protocol for the Determination of Weak Acids’ p Ka Values in DMSO. J Org Chem 2020; 85:10951-10957. [DOI: 10.1021/acs.joc.0c00909] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Sebastian T. Jung
- Institut für Organische Chemie, Karlsruher Institut für Technologie (KIT), Fritz-Haber-Weg 6, 76131 Karlsruhe, Germany
| | - Joachim Podlech
- Institut für Organische Chemie, Karlsruher Institut für Technologie (KIT), Fritz-Haber-Weg 6, 76131 Karlsruhe, Germany
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6
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Kumar J, Ahmad A, Rizvi MA, Ganie MA, Khajuria C, Shah BA. Photoredox-Mediated Synthesis of Functionalized Sulfoxides from Terminal Alkynes. Org Lett 2020; 22:5661-5665. [PMID: 32602720 DOI: 10.1021/acs.orglett.0c02055] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
A photoredox-mediated protocol for the synthesis of α-alkoxy-β-ketosulfoxides and α,β-dialkoxysulfoxides using alkynes, thiol, and alcohols is reported. This work presents a rare single-step synthesis of α-substituted sulfoxides, involving tandem introduction of a thiol and alcohol as a key enabling advancement. Furthermore, the method can be easily employed to access vinyl sulfoxides and β-ketosulfoxides.
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Affiliation(s)
- Jaswant Kumar
- AcSIR and Natural Product Microbes, CSIR-Indian Institute of Integrative Medicine, Jammu 180001, Jammu and Kashmir
| | - Ajaz Ahmad
- AcSIR and Natural Product Microbes, CSIR-Indian Institute of Integrative Medicine, Jammu 180001, Jammu and Kashmir
| | - Masood Ahmad Rizvi
- Department of Chemistry, University of Kashmir, Srinagar 190006, Jammu and Kashmir
| | - Majid Ahmed Ganie
- AcSIR and Natural Product Microbes, CSIR-Indian Institute of Integrative Medicine, Jammu 180001, Jammu and Kashmir
| | - Chhavi Khajuria
- AcSIR and Natural Product Microbes, CSIR-Indian Institute of Integrative Medicine, Jammu 180001, Jammu and Kashmir.,Department of Chemistry, Guru Nanak Dev University, Amritsar, India
| | - Bhahwal Ali Shah
- AcSIR and Natural Product Microbes, CSIR-Indian Institute of Integrative Medicine, Jammu 180001, Jammu and Kashmir
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8
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Shan H, Wilson WK, Kamaric E. NOESY and DFT-GIAO Calculations Reveal Pervasive Errors in C20 Configurations of Taraxastane-3,20-diols: Proposals to Improve NMR Structure Determinations. Org Lett 2020; 22:1714-1719. [DOI: 10.1021/acs.orglett.9b04566] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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9
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Wang B, Yu D, Zhao D, Rong C, Liu S. Nature and origin of γ-gauche effect in sulfoxides: A density functional theory and information-theoretic approach study. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2019.06.039] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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10
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Cagašová K, Ghavami M, Yao ZK, Carlier PR. Questioning the γ-gauche effect: stereoassignment of 1,3-disubstituted-tetrahydro-β-carbolines using 1H- 1H coupling constants. Org Biomol Chem 2019; 17:6687-6698. [PMID: 31232413 DOI: 10.1039/c9ob01139k] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
The Pictet-Spengler reaction of tryptophan esters and aldehydes has been widely applied in natural product synthesis and medicinal chemistry. To date, the trans- or cis-configuration of 1,3-disubstituted tetrahydro-β-carbolines (THβCs) formed in this reaction has most often been assigned based on the relative 13C chemical shifts of C1 and C3 in the diastereomers. Although the upfield shifts of C1 and C3 in trans-THβCs relative to cis-THβCs has been attributed to steric compression associated with the "γ-gauche" effect, we show that this effect is not borne out experimentally for other carbons that should suffer this same compression. Thus we developed a robust alternative method for stereochemical assignment based on 1H NMR coupling constants (31 examples) and supported by extensive DFT-based conformational analysis and calculation of 1H-1H coupling constants. DFT calculations of 13C NMR chemical shifts also cast doubt upon the role of the "γ-gauche" effect on C1 and C3 chemical shifts in trans-THβCs.
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Affiliation(s)
- Kristýna Cagašová
- Department of Chemistry and Virginia Tech Center for Drug Discovery, Virginia Tech, Hahn Hall South, 800 West Campus Drive, Blacksburg, Virginia 24061, USA.
| | - Maryam Ghavami
- Department of Chemistry and Virginia Tech Center for Drug Discovery, Virginia Tech, Hahn Hall South, 800 West Campus Drive, Blacksburg, Virginia 24061, USA.
| | - Zhong-Ke Yao
- Department of Chemistry and Virginia Tech Center for Drug Discovery, Virginia Tech, Hahn Hall South, 800 West Campus Drive, Blacksburg, Virginia 24061, USA.
| | - Paul R Carlier
- Department of Chemistry and Virginia Tech Center for Drug Discovery, Virginia Tech, Hahn Hall South, 800 West Campus Drive, Blacksburg, Virginia 24061, USA.
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11
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Li LN, Liu XQ, Zhu DR, Chen C, Lin YL, Wang WL, Zhu L, Luo JG, Kong LY. Officinalins A and B, a pair of C23 terpenoid epimers with a tetracyclic 6/7/5/5 system from Salvia officinalis. Org Chem Front 2019. [DOI: 10.1039/c9qo00861f] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Officinalins A (1) and B (2), a pair of 6/7/5/5 tetracyclic C23 terpenoid epimers with a unique tetracycline-[9.6.0.03,8.012,16]-heptadecane core and a peroxide bridge, were isolated from the leaves of Salvia officinalis.
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Affiliation(s)
- Ling-Nan Li
- Jiangsu Key Laboratory of Bioactive Natural Product Research and State Key Laboratory of Natural Medicines
- China Pharmaceutical University
- Nanjing 210009
- People's Republic of China
| | - Xiao-Qin Liu
- Jiangsu Key Laboratory of Bioactive Natural Product Research and State Key Laboratory of Natural Medicines
- China Pharmaceutical University
- Nanjing 210009
- People's Republic of China
| | - Dong-Rong Zhu
- Jiangsu Key Laboratory of Bioactive Natural Product Research and State Key Laboratory of Natural Medicines
- China Pharmaceutical University
- Nanjing 210009
- People's Republic of China
| | - Chen Chen
- Jiangsu Key Laboratory of Bioactive Natural Product Research and State Key Laboratory of Natural Medicines
- China Pharmaceutical University
- Nanjing 210009
- People's Republic of China
| | - Yao-Lan Lin
- Jiangsu Key Laboratory of Bioactive Natural Product Research and State Key Laboratory of Natural Medicines
- China Pharmaceutical University
- Nanjing 210009
- People's Republic of China
| | - Wen-Li Wang
- Jiangsu Key Laboratory of Bioactive Natural Product Research and State Key Laboratory of Natural Medicines
- China Pharmaceutical University
- Nanjing 210009
- People's Republic of China
| | - Li Zhu
- Jiangsu Key Laboratory of Bioactive Natural Product Research and State Key Laboratory of Natural Medicines
- China Pharmaceutical University
- Nanjing 210009
- People's Republic of China
| | - Jian-Guang Luo
- Jiangsu Key Laboratory of Bioactive Natural Product Research and State Key Laboratory of Natural Medicines
- China Pharmaceutical University
- Nanjing 210009
- People's Republic of China
| | - Ling-Yi Kong
- Jiangsu Key Laboratory of Bioactive Natural Product Research and State Key Laboratory of Natural Medicines
- China Pharmaceutical University
- Nanjing 210009
- People's Republic of China
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12
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Surur AS, Schulig L, Link A. Interconnection of sulfides and sulfoxides in medicinal chemistry. Arch Pharm (Weinheim) 2018; 352:e1800248. [DOI: 10.1002/ardp.201800248] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2018] [Revised: 10/29/2018] [Accepted: 10/30/2018] [Indexed: 12/17/2022]
Affiliation(s)
| | - Lukas Schulig
- Institute of Pharmacy; University of Greifswald; Greifswald Germany
| | - Andreas Link
- Institute of Pharmacy; University of Greifswald; Greifswald Germany
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