1
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Liu X, Guo W, Feng H, Pang B, Wu Y. Competition between Elimination and Substitution for Ambident Nucleophiles CN - and Iodoethane Reactions in Gaseous and Aqueous Medium. J Phys Chem A 2023; 127:7373-7382. [PMID: 37639466 DOI: 10.1021/acs.jpca.3c04630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/31/2023]
Abstract
Nucleophilic substitution (SN2) and elimination (E2) reactions between ambident nucleophiles have long been considered as typical reactions in organic chemistry, and exploring the competition between the two reactions is of great importance in chemical synthesis. As a nucleophile, CN- can use its C and N atoms as the reactive centers to undergo E2 and SN2 reactions, but related research is currently limited. This study uses the CCSD(T)/pp/t//MP2/ECP/d electronic structure method to perform detailed investigations on the potential energy profiles for SN2 and E2 reactions between CN- and CH3CH2I in gaseous and aqueous media. The potential energy profiles reveal that the energy barriers for SN2 and E2 reactions with the C atom as the reactive center are consistently lower than those with the N atom, indicating that the C atom has a stronger nucleophilic ability and stronger basicity. Furthermore, the potential energy profiles in both gas and aqueous environments show that the barriers of SN2 reactions are lower than those for E2 reactions with both C and N as the attacking atom. By using the frontier molecular orbital and activation strain models to explain the interesting phenomenon, the transition from the gas phase to solution was investigated, specifically in the gas-microsolvation-water transition. The results show that water molecules reduce the nucleophilicity and basicity of CN-, while strain energy (ΔEstrain) causes a greater increase in the energy barrier for E2 reactions. This study provides new insights and perspectives on the understanding of CN- as a nucleophile in SN2 reactions and serves as theoretical guidance for organic synthesis.
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Affiliation(s)
- Xu Liu
- College of Chemistry, Liaoning University, Shenyang 110036, P. R. China
| | - Wenyu Guo
- College of Chemistry, Liaoning University, Shenyang 110036, P. R. China
| | - Huining Feng
- College of Chemistry, Liaoning University, Shenyang 110036, P. R. China
| | - Boxue Pang
- Key Laboratory of Ministry of Education on Safe Mining of Deep Metal Mines, School of Resources and Civil Engineering, Northeastern University, Shenyang 110819, China
| | - Yang Wu
- College of Chemistry, Liaoning University, Shenyang 110036, P. R. China
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2
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Robinson HT, Corkish TR, Haakansson CT, Watson PD, McKinley AJ, Wild DA. Spectroscopic Study of the Br - +CH 3 I→I - +CH 3 Br S N 2 Reaction. Chemphyschem 2022; 23:e202200278. [PMID: 35708114 PMCID: PMC9804238 DOI: 10.1002/cphc.202200278] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Revised: 06/06/2022] [Indexed: 01/05/2023]
Abstract
Mass spectrometry and anion photoelectron spectroscopy have been used to study the gas-phaseS N 2 ${{{\rm S}}_{{\rm N}}2}$ reaction involvingB r - ${{{\rm B}{\rm r}}^{-}}$ andC H 3 I ${{{\rm C}{\rm H}}_{3}{\rm I}}$ . The anion photoelectron spectra associated with the reaction intermediates of thisS N 2 ${{{\rm S}}_{{\rm N}}2}$ reaction are presented. High-level CCSD(T) calculations have been utilised to investigate the reaction intermediates that may form as a result of theS N 2 ${{{\rm S}}_{{\rm N}}2}$ reaction along various different reaction pathways, including back-side attack and front-side attack. In addition, simulated vertical detachment energies of each reaction intermediate have been calculated to rationalise the photoelectron spectra.
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Affiliation(s)
- Hayden T. Robinson
- School of Molecular SciencesThe University of Western AustraliaCrawleyWestern Australia6009
| | - Timothy R. Corkish
- School of Molecular SciencesThe University of Western AustraliaCrawleyWestern Australia6009
| | | | - Peter D. Watson
- School of Molecular SciencesThe University of Western AustraliaCrawleyWestern Australia6009
- Department of ChemistryUniversity of OxfordSouth Parks RoadOxfordUnited KingdomOX1 3QZ
| | - Allan J. McKinley
- School of Molecular SciencesThe University of Western AustraliaCrawleyWestern Australia6009
| | - Duncan A. Wild
- School of Molecular SciencesThe University of Western AustraliaCrawleyWestern Australia6009
- School of ScienceEdith Cowan UniversityJoondalupWestern Australia6027
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3
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Yu F. Origin of the Microsolvation Effect on the Central Barriers of S N2 Reactions. J Phys Chem A 2022; 126:4342-4348. [PMID: 35785958 DOI: 10.1021/acs.jpca.2c01677] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We have quantitatively analyzed the microsolvation effect on the central barriers of microsolvated bimolecular nucleophilic substitution (SN2) reactions by means of a two-step energy decomposition procedure. According to the first energy decompositions, an obvious increase in the central barrier for a microsolvated SN2 reaction against its unsolvated counterpart can be mainly ascribed to the fact that the interaction between the solute and the conjunct solvent becomes less attractive from the reactant complex to the transition state. On the basis of the second energy decompositions with symmetry-adapted perturbation theory, this less attractive interaction in the transition state is primarily due to the interplay of the changes in the electrostatic, exchange, and induction components. However, the contribution of the change for the dispersion component is relatively small. A distinct linear correlation has also been observed between the changes of the total interaction energies and those of the corresponding electrostatic components for the microsolvated SN2 reactions studied in this work. Moreover, the two-step energy decomposition procedure employed in this work is expected to be extensively applied to the gas phase reactions mediated by molecules or clusters.
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Affiliation(s)
- Feng Yu
- Department of Physics, School of Freshmen, Xi'an Technological University, No. 4 Jinhua North Road, Xi'an, Shaanxi 710032, China
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4
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Lu X, Li L, Zhang X, Fu B, Xu X, Zhang DH. Dynamical Effects of S N2 Reactivity Suppression by Microsolvation: Dynamics Simulations of the F -(H 2O) + CH 3I Reaction on a 21-Dimensional Potential Energy Surface. J Phys Chem Lett 2022; 13:5253-5259. [PMID: 35674277 DOI: 10.1021/acs.jpclett.2c01323] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
A comparison of atomistic dynamics between microsolvated and unsolvated reactions can expose the precise role of solvent molecules and thus provide deep insight into how solvation influences chemical reactions. Here we developed the first full-dimensional analytical potential energy surface of the F-(H2O) + CH3I reaction, which facilitates the efficient dynamics simulations on a quantitatively accurate level. The computed SN2 reactivity suppression ratio of the monosolvated F-(H2O) + CH3I reaction relative to the unsolvated F- + CH3I reaction as a function of collision energy first increases and then decreases steadily, forming an inverted-V shape, due to the combined dynamical effects of interaction time, steric hindrance, and collision-induced dehydration. Moreover, further analysis reveals that the steric effect of the F-(H2O) + CH3I reaction resulting from the single water molecule is manifested mainly in dragging the F- anion away from the central C atom, rather than shielding F- from C. Our study shows there is great potential in rigorously studying the role of the solvent in more complicated reactions.
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Affiliation(s)
- Xiaoxiao Lu
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Lulu Li
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Xiaoren Zhang
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Bina Fu
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Xin Xu
- Department of Chemistry, Fudan University, Shanghai 200433, China
| | - Dong H Zhang
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
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5
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Valverde D, Georg HC, Canuto S. Free-Energy Landscape of the S N2 Reaction CH 3Br + Cl - → CH 3Cl + Br - in Different Liquid Environments. J Phys Chem B 2022; 126:3685-3692. [PMID: 35543431 DOI: 10.1021/acs.jpcb.1c10282] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
This work describes in detail the reaction path of the well-known SN2 reaction CH3Br + Cl- → CH3Cl + Br-, whose reaction rate has a huge variation with the solvent in the gas phase and in protic and aprotic liquid environments. We employed the ASEC-FEG method to optimize for minima (reactants and products) and saddle points (transition states) in the in-solution free-energy hypersurface. The method takes atomistic details of the solvent into account. A polarizable continuum model (PCM) has also been employed for comparison. The most perceptive structural changes are noted in aqueous solution by using the ASEC-FEG approach. The activation energies in all solvents, estimated by means of free-energy perturbation calculations, are in good agreement with the experimental data. The total solute-solvent hydrogen bonds play an important role in the increased barrier height observed in water and are therefore crucial to explain the huge decrease in the kinetic constant. It is also found that the hydration shell around the ions breaks itself spontaneously to accommodate the molecule, thus forming minimum energy complexes.
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Affiliation(s)
- Danillo Valverde
- Instituto de Física, Universidade de São Paulo, Rua do Matão 1371 Cidade Universitária, CEP 05508-090 São Paulo, São Paulo, Brazil
| | - Herbert C Georg
- Instituto de Física, Universidade Federal de Goiás, Avenida Esperança, Campus Samambaia, CEP 74690-900 Goiânia, Goiás, Brazil
| | - Sylvio Canuto
- Instituto de Física, Universidade de São Paulo, Rua do Matão 1371 Cidade Universitária, CEP 05508-090 São Paulo, São Paulo, Brazil
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6
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Ji X, Xie J. Proton transfer-induced competing product channels of microsolvated Y -(H 2O) n + CH 3I (Y = F, Cl, Br, I) reactions. Phys Chem Chem Phys 2022; 24:7539-7550. [PMID: 35289813 DOI: 10.1039/d1cp04873b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The potential energy profiles of three proton transfer-involved product channels for the reactions of Y-(H2O)1,2 + CH3I (Y = F, Cl, Br, I) were characterized using the B97-1/ECP/d method. These three channels include the (1) PTCH3 product channel that transfers a proton from methyl to nucleophile, (2) HO--induced nucleophilic substitution (HO--SN2) product channel, and (3) oxide ion substitution (OIS) product channel that gives CH3O- and HY products. The reaction enthalpies and barrier heights follow the order OIS > PTCH3 > HO--SN2 > Y--SN2, and thus HO--SN2 can compete with the most favored Y--SN2 product channel under singly-/doubly-hydrated conditions, while the PTCH3 channel only occurs under high collision energy and the OIS channel is the least probable. All product channels share the same pre-reaction complex, Y-(H2O)n-CH3I, in the entrance of the potential energy profile, signifying the importance of the pre-reaction complex. For HO-/Y--SN2 channels, we considered front-side attack, back-side attack, and halogen-bonded complex mechanisms. Incremental hydration increases the barriers of both HO-/Y--SN2 channels as well as their barrier difference, implying that the HO--SN2 channel becomes less important when further hydrated. Varying the nucleophile Y- from F- to I- also increases the barrier heights and barrier difference, which correlates with the proton affinity of the nucleophiles. Energy decomposition analyses show that both the orbital interaction energy and structural deformation energy of the transition states determine the SN2 barrier change trend with incremental hydration and varying Y-. In brief, this work computes the comprehensive potential energy surfaces of the HO--SN2 and PTCH3 channels and shows how proton transfer affects the microsolvated Y-(H2O)1,2 + CH3I reaction by competing with the traditional Y--SN2 channel.
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Affiliation(s)
- Xiaoyan Ji
- Key Laboratory of Cluster Science of Ministry of Education, Beijing Key Laboratory of Photoelectronic/Electrophotonic Conversion Materials, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing 100081, China.
| | - Jing Xie
- Key Laboratory of Cluster Science of Ministry of Education, Beijing Key Laboratory of Photoelectronic/Electrophotonic Conversion Materials, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing 100081, China.
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7
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Zhao C, Ma X, Wu X, Thomsen DL, Bierbaum VM, Xie J. Single Solvent Molecules Induce Dual Nucleophiles in Gas-Phase Ion-Molecule Nucleophilic Substitution Reactions. J Phys Chem Lett 2021; 12:7134-7139. [PMID: 34296887 DOI: 10.1021/acs.jpclett.1c01665] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Direct dynamics simulation of singly hydrated peroxide ion reacting with CH3Cl reveals a new product channel that forms CH3OH + Cl- + HOOH, besides the traditional channel that forms CH3OOH + Cl- + H2O. This finding shows that singly hydrated peroxide ion behaves as a dual nucleophile through proton transfer between HOO-(H2O) and HO-(HOOH). Trajectory analysis attributes the occurrence of the thermodynamically and kinetically unfavored HO--induced pathway to the entrance channel dynamics, where extensive proton transfer occurs within the deep well of the prereaction complex. This study represents the first example of a single solvent molecule altering the nucleophile in a gas-phase ion-molecule nucleophilic substitution reaction, in addition to reducing the reactivity and affecting the dynamics, signifying the importance of dynamical effects of solvent molecules.
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Affiliation(s)
- Chongyang Zhao
- Key Laboratory of Cluster Science of Ministry of Education, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing 100081, China
| | - Xinyou Ma
- Department of Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
| | - Xiangyu Wu
- Key Laboratory of Cluster Science of Ministry of Education, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing 100081, China
| | - Ditte L Thomsen
- Department of Chemistry, University of Colorado Boulder, 215 UCB, Boulder, Colorado 80309, United States
| | - Veronica M Bierbaum
- Department of Chemistry, University of Colorado Boulder, 215 UCB, Boulder, Colorado 80309, United States
| | - Jing Xie
- Key Laboratory of Cluster Science of Ministry of Education, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing 100081, China
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8
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Ji X, Zhao C, Xie J. Investigating the role of halogen-bonded complexes in microsolvated Y−(H2O)n + CH3I SN2 reactions. Phys Chem Chem Phys 2021; 23:6349-6360. [DOI: 10.1039/d0cp06299e] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A halogen-bonded complex pathway is computed for Y−(H2O)n + CH3I (Y = HO, F, Cl, Br, and I) ion–molecule nucleophilic substitution reactions and is compared with back-side and front-side attack pathways.
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Affiliation(s)
- Xiaoyan Ji
- Key Laboratory of Cluster Science of Ministry of Education
- School of Chemistry and Chemical Engineering
- Beijing Institute of Technology
- Beijing 100081
- China
| | - Chongyang Zhao
- Key Laboratory of Cluster Science of Ministry of Education
- School of Chemistry and Chemical Engineering
- Beijing Institute of Technology
- Beijing 100081
- China
| | - Jing Xie
- Key Laboratory of Cluster Science of Ministry of Education
- School of Chemistry and Chemical Engineering
- Beijing Institute of Technology
- Beijing 100081
- China
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9
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Bastian B, Michaelsen T, Li L, Ončák M, Meyer J, Zhang DH, Wester R. Imaging Reaction Dynamics of F -(H 2O) and Cl -(H 2O) with CH 3I. J Phys Chem A 2020; 124:1929-1939. [PMID: 32050071 PMCID: PMC7197043 DOI: 10.1021/acs.jpca.0c00098] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
![]()
The
dynamics of microhydrated nucleophilic substitution reactions
have been studied using crossed beam velocity map imaging experiments
and quasiclassical trajectory simulations at different collision energies
between 0.3 and 2.6 eV. For F–(H2O) reacting
with CH3I, a small fraction of hydrated product ions I–(H2O) is observed at low collision energies.
This product, as well as the dominant I–, is formed
predominantly through indirect reaction mechanisms. In contrast, a
much smaller indirect fraction is determined for the unsolvated reaction.
At the largest studied collision energies, the solvated reaction is
found to also occur via a direct rebound mechanism. The measured product
angular distributions exhibit an overall good agreement with the simulated
angular distributions. Besides nucleophilic substitution, also ligand
exchange reactions forming F–(CH3I) and,
at high collision energies, proton transfer reactions are detected.
The differential scattering images reveal that the Cl–(H2O) + CH3I reaction also proceeds predominantly
via indirect reaction mechanisms.
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Affiliation(s)
- Björn Bastian
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria
| | - Tim Michaelsen
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria
| | - Lulu Li
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, China
| | - Milan Ončák
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria
| | - Jennifer Meyer
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria
| | - Dong H Zhang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, China
| | - Roland Wester
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria
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10
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Olasz B, Czakó G. High-Level-Optimized Stationary Points for the F -(H 2O) + CH 3I System: Proposing a New Water-Induced Double-Inversion Pathway. J Phys Chem A 2019; 123:454-462. [PMID: 30571112 DOI: 10.1021/acs.jpca.8b10630] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We report 29 stationary points for the F-(H2O) + CH3I reaction obtained by using the high-level explicitly correlated CCSD(T)-F12b method with the aug-cc-pVDZ basis set for the determination of the benchmark structures and frequencies and the aug-cc-pVQZ basis for energy computations. The stationary points characterize the monohydrated F-- and OH--induced Walden-inversion pathways and, for the first time, the front-side attack and F--induced double-inversion mechanisms leading to CH3F with retention as well as the novel H2O-induced double-inversion retention pathway producing CH3OH. Hydration effectively increases the relative energies of the stationary points, but the monohydrated inversion pathways are still barrierless, whereas the front-side attack and double-inversion barrier heights are around 30 and 20 kcal/mol, respectively.
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Affiliation(s)
- Balázs Olasz
- Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry , University of Szeged , Rerrich Béla tér 1 , Szeged H-6720 , Hungary
| | - Gábor Czakó
- Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry , University of Szeged , Rerrich Béla tér 1 , Szeged H-6720 , Hungary
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