1
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de Moura CEV, Sokolov AY. Efficient Spin-Adapted Implementation of Multireference Algebraic Diagrammatic Construction Theory. I. Core-Ionized States and X-ray Photoelectron Spectra. J Phys Chem A 2024. [PMID: 38962857 DOI: 10.1021/acs.jpca.4c03161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/05/2024]
Abstract
We present an efficient implementation of multireference algebraic diagrammatic construction theory (MR-ADC) for simulating core-ionized states and X-ray photoelectron spectra (XPS). Taking advantage of spin adaptation, automatic code generation, and density fitting, our implementation can perform calculations for molecules with more than 1500 molecular orbitals, incorporating static and dynamic correlation in the ground and excited electronic states. We demonstrate the capabilities of MR-ADC methods by simulating the XPS spectra of substituted ferrocene complexes and azobenzene isomers. For the ground electronic states of these molecules, the XPS spectra computed using the extended second-order MR-ADC method (MR-ADC(2)-X) are in a very good agreement with available experimental results. We further show that MR-ADC can be used as a tool for interpreting or predicting the results of time-resolved XPS measurements by simulating the core ionization spectra of azobenzene along its photoisomerization, including the XPS signatures of excited states and the minimum energy conical intersection. This work is the first in a series of publications reporting the efficient implementations of MR-ADC methods.
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Affiliation(s)
- Carlos E V de Moura
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
| | - Alexander Yu Sokolov
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
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2
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Fransson T, Pettersson LGM. TDDFT and the x-ray absorption spectrum of liquid water: Finding the "best" functional. J Chem Phys 2024; 160:234105. [PMID: 38884399 DOI: 10.1063/5.0209719] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Accepted: 06/03/2024] [Indexed: 06/18/2024] Open
Abstract
We investigate the performance of time-dependent density functional theory (TDDFT) for reproducing high-level reference x-ray absorption spectra of liquid water and water clusters. For this, we apply the integrated absolute difference (IAD) metric, previously used for x-ray emission spectra of liquid water [T. Fransson and L. G. M. Pettersson, J. Chem. Theory Comput. 19, 7333-7342 (2023)], in order to investigate which exchange-correlation (xc) functionals yield TDDFT spectra in best agreement to reference, as well as to investigate the suitability of IAD for x-ray absorption spectroscopy spectrum calculations. Considering highly asymmetric and symmetric six-molecule clusters, it is seen that long-range corrected xc-functionals are required to yield good agreement with the reference coupled cluster (CC) and algebraic-diagrammatic construction spectra, with 100% asymptotic Hartree-Fock exchange resulting in the lowest IADs. The xc-functionals with best agreement to reference have been adopted for larger water clusters, yielding results in line with recently published CC theory, but which still show some discrepancies in the relative intensity of the features compared to experiment.
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Affiliation(s)
- Thomas Fransson
- Department of Physics, AlbaNova University Center, Stockholm University, 10961 Stockholm, Sweden
| | - Lars G M Pettersson
- Department of Physics, AlbaNova University Center, Stockholm University, 10961 Stockholm, Sweden
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3
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Gaba NP, de Moura CEV, Majumder R, Sokolov AY. Simulating transient X-ray photoelectron spectra of Fe(CO) 5 and its photodissociation products with multireference algebraic diagrammatic construction theory. Phys Chem Chem Phys 2024; 26:15927-15938. [PMID: 38805029 DOI: 10.1039/d4cp00801d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/29/2024]
Abstract
Accurate simulations of transient X-ray photoelectron spectra (XPS) provide unique opportunities to bridge the gap between theory and experiment in understanding the photoactivated dynamics in molecules and materials. However, simulating X-ray photoelectron spectra along a photochemical reaction pathway is challenging as it requires accurate description of electronic structure incorporating core-hole screening, orbital relaxation, electron correlation, and spin-orbit coupling in excited states or at nonequilibrium ground-state geometries. In this work, we employ the recently developed multireference algebraic diagrammatic construction theory (MR-ADC) to investigate the core-ionized states and X-ray photoelectron spectra of Fe(CO)5 and its photodissociation products (Fe(CO)4, Fe(CO)3) following excitation with 266 nm light. The simulated transient Fe 3p and CO 3σ XPS spectra incorporating spin-orbit coupling and high-order electron correlation effects are shown to be in a good agreement with the experimental measurements by Leitner et al. [J. Chem. Phys., 2018, 149, 044307]. Our calculations suggest that core-hole screening, spin-orbit coupling, and ligand-field splitting effects are similarly important in reproducing the experimentally observed chemical shifts in transient Fe 3p XPS spectra of iron carbonyl complexes. Our results also demonstrate that the MR-ADC methods can be very useful in interpreting the transient XPS spectra of transition metal compounds.
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Affiliation(s)
- Nicholas P Gaba
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio, 43210, USA.
| | - Carlos E V de Moura
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio, 43210, USA.
| | - Rajat Majumder
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio, 43210, USA.
| | - Alexander Yu Sokolov
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio, 43210, USA.
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4
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Ferté A, Giner E, Taïeb R, Carniato S. Unraveling the variational breakdown of core valence separation calculations: Diagnostic and cure to the over relaxation error of double core hole states. J Chem Phys 2023; 159:144104. [PMID: 37811825 DOI: 10.1063/5.0159493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Accepted: 09/21/2023] [Indexed: 10/10/2023] Open
Abstract
The core valence separation (CVS) approximation is the most employed strategy to prevent the variational collapse of standard wave function optimization when attempting to compute electronic states bearing one or more electronic vacancies in core orbitals. Here, we explore the spurious consequences of this approximation on the properties of the computed core hole states. We especially focus on the less studied case of double core hole (DCH) states, whose spectroscopic interest has recently been rapidly growing. We show that the CVS error leads to a systematic underestimation of DCH energies, a property in stark contrast with the case of single core hole states. We highlight that the CVS error can then be interpreted as an over relaxation effect and design a new correction strategy adapted to these specificities.
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Affiliation(s)
- Anthony Ferté
- Laboratoire de Chimie Physique-Matière et Rayonnement, Sorbonne Université and CNRS, F-75005 Paris, France
- Laboratoire de Chimie et Interdisciplinarité, Synthèse, Analyse, Modélisation, Nantes Université and CNRS, F-44000 Nantes, France
| | - Emmanuel Giner
- Laboratoire de Chimie Théorique, Sorbonne Université and CNRS, F-75005 Paris, France
| | - Richard Taïeb
- Laboratoire de Chimie Physique-Matière et Rayonnement, Sorbonne Université and CNRS, F-75005 Paris, France
| | - Stéphane Carniato
- Laboratoire de Chimie Physique-Matière et Rayonnement, Sorbonne Université and CNRS, F-75005 Paris, France
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5
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Huang M, Evangelista FA. A study of core-excited states of organic molecules computed with the generalized active space driven similarity renormalization group. J Chem Phys 2023; 158:124112. [PMID: 37003756 DOI: 10.1063/5.0137096] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2023] Open
Abstract
This work examines the accuracy and precision of x-ray absorption spectra computed with a multireference approach that combines generalized active space (GAS) references with the driven similarity renormalization group (DSRG). We employ the x-ray absorption benchmark of organic molecule (XABOOM) set, consisting of 116 transitions from mostly organic molecules [Fransson et al., J. Chem. Theory Comput. 17, 1618 (2021)]. Several approximations to a full-valence active space are examined and benchmarked. Absolute excitation energies and intensities computed with the GAS-DSRG truncated to second-order in perturbation theory are found to systematically underestimate experimental and reference theoretical values. Third-order perturbative corrections significantly improve the accuracy of GAS-DSRG absolute excitation energies, bringing the mean absolute deviation from experimental values down to 0.32 eV. The ozone molecule and glyoxylic acid are particularly challenging for second-order perturbation theory and are examined in detail to assess the importance of active space truncation and intruder states.
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Affiliation(s)
- Meng Huang
- Department of Chemistry and Cherry Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, USA
| | - Francesco A Evangelista
- Department of Chemistry and Cherry Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, USA
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6
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Ye L, Wang H, Zhang Y, Liu W. Self-Adaptive Real-Time Time-Dependent Density Functional Theory for X-ray Absorptions. J Chem Phys 2022; 157:074106. [DOI: 10.1063/5.0106250] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Real-time time-dependent density functional theory (RT-TDDFT) can in principle access the whole absorption spectrum of a many-electron system exposed to a narrow pulse. However, this requires an accurate and efficient propagator for the numerical integration of the time-dependent Kohn-Sham equation. While a low-order time propagator is already sufficient for the low-lying valence absorption spectra, it is no longer the case for the X-ray absorption spectra (XAS) of systems composed even only of light elements, for which the use of a high-order propagator is indispensable. It is then crucial to choose a largest possible time step and a shortest possible simulation time, so as to minimize the computational cost. To this end, we propose here a robust AutoPST approach to determine automatically (Auto) the propagator (P), step (S), and time (T) for relativistic RT-TDDFT simulations of XAS.
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Affiliation(s)
| | - Hao Wang
- Shandong University - Qingdao Campus, China
| | | | - Wenjian Liu
- Qingdao Institue for Theoretical and Computational Sciences, Shandong University, China
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7
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Nascimento DR, Govind N. Computational approaches for XANES, VtC-XES, and RIXS using linear-response time-dependent density functional theory based methods. Phys Chem Chem Phys 2022; 24:14680-14691. [PMID: 35699090 DOI: 10.1039/d2cp01132h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
The emergence of state-of-the-art X-ray light sources has paved the way for novel spectroscopies that take advantage of their atomic specificity to shed light on fundamental physical, chemical, and biological processes both in the static and time domains. The success of these experiments hinges on the ability to interpret and predict core-level spectra, which has opened avenues for theory to play a key role. Over the last two decades, linear-response time-dependent density functional theory (LR-TDDFT), despite various theoretical challenges, has become a computationally attractive and versatile framework to study excited-state spectra including X-ray spectroscopies. In this context, we focus our discussion on LR-TDDFT approaches for the computation of X-ray Near-Edge Structure (XANES), Valence-to-Core X-ray Emission (VtC-XES), and Resonant Inelastic X-ray Scattering (RIXS) spectroscopies in molecular systems with an emphasis on Gaussian basis set implementations. We illustrate these approaches with applications and provide a brief outlook of possible new directions.
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Affiliation(s)
- Daniel R Nascimento
- Department of Chemistry, The University of Memphis, Memphis, TN, 38152, USA.
| | - Niranjan Govind
- Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.
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8
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Brumboiu IE, Fransson T. Core-hole delocalization for modeling X-ray spectroscopies: A cautionary tale. J Chem Phys 2022; 156:214109. [DOI: 10.1063/5.0088195] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The influence of core-hole delocalization for X-ray photoelectron, X-ray absorption, and X-ray emission spectrum calculations is investigated in detail, using approaches including response theory, transition-potential methods, and ground state schemes. The question of a localized/delocalized vacancy is relevant for systems with symmetrically equivalent atoms, as well as near-degeneracies which can distribute the core-orbitals over several atoms. We show that issues relating to core-hole delocalization are present for calculations considering explicit core-hole states, e.g. when using a core-excited or core-ionized reference state, or for fractional occupation numbers. Including electron correlation eventually alleviates the issues, but even using CCSD(T) there is a noticable discrepancy between core-ionization energies obtained with a localized and delocalized core-hole (0.5 eV for the carbon K-edge). Within density functional theory, the discrepancy correlates to the exchange interaction involving the core orbitals of the same spin symmetry as the delocalized core-hole. The use of a localized core-hole allows for a reasonably good inclusion of relaxation at lower level of theory, whereas the proper symmetry solution involving a delocalized core-hole requires higher levels of theory to account for the correlation effects involved in orbital relaxation. For linear response methods, we further show that if X-ray absorption spectra are modelled by considering symmetry-unique sets of atoms, care has to be taken such that there are no delocalizations of the core orbitals, which would otherwise introduce shifts in absolute energies and relative features.
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Affiliation(s)
- Iulia Emilia Brumboiu
- Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University in Torun Institute of Physics, Poland
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9
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Yao Y, Golze D, Rinke P, Blum V, Kanai Y. All-Electron BSE@ GW Method for K-Edge Core Electron Excitation Energies. J Chem Theory Comput 2022; 18:1569-1583. [PMID: 35138865 DOI: 10.1021/acs.jctc.1c01180] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
We present an accurate computational approach to calculate absolute K-edge core electron excitation energies as measured by X-ray absorption spectroscopy. Our approach employs an all-electron Bethe-Salpeter equation (BSE) formalism based on GW quasiparticle energies (BSE@GW) using numeric atom-centered orbitals (NAOs). The BSE@GW method has become an increasingly popular method for the computation of neutral valence excitation energies of molecules. However, it was so far not applied to molecular K-edge excitation energies. We discuss the influence of different numerical approximations on the BSE@GW calculation and employ in our final setup (i) exact numeric algorithms for the frequency integration of the GW self-energy, (ii) G0W0 and BSE starting points with ∼50% of exact exchange, (iii) the Tamm-Dancoff approximation and (iv) relativistic corrections. We study the basis set dependence and convergence with common Gaussian-type orbital and NAO basis sets. We identify the importance of additional spatially confined basis functions as well as of diffuse augmenting basis functions. The accuracy of our BSE@GW method is assessed for a benchmark set of small organic molecules, previously used for benchmarking the equation-of-motion coupled cluster method [Peng et al., J. Chem. Theory Comput., 2015, 11, 4146], as well as the medium-sized dibenzothiophene (DBT) molecule. Our BSE@GW results for absolute excitation energies are in excellent agreement with the experiment, with a mean average error of only 0.63 eV for the benchmark set and with errors <1 eV for the DBT molecule.
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Affiliation(s)
- Yi Yao
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Dorothea Golze
- Faculty of Chemistry and Food Chemistry, Technische Universität Dresden, 01062 Dresden, Germany.,Department of Applied Physics, Aalto University, P.O. Box 11100, FI-00076 Aalto, Finland
| | - Patrick Rinke
- Department of Applied Physics, Aalto University, P.O. Box 11100, FI-00076 Aalto, Finland
| | | | - Yosuke Kanai
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
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10
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de Moura CEV, Sokolov AY. Simulating X-ray photoelectron spectra with strong electron correlation using multireference algebraic diagrammatic construction theory. Phys Chem Chem Phys 2022; 24:4769-4784. [DOI: 10.1039/d1cp05476g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
A new theoretical approach for the simulations of X-ray photoelectron spectra of strongly correlated molecular systems that combines multireference algebraic diagrammatic construction theory (MR-ADC) with a core–valence separation (CVS) technique.
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Affiliation(s)
- Carlos E. V. de Moura
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio, 43210, USA
| | - Alexander Yu. Sokolov
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio, 43210, USA
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11
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Huang M, Li C, Evangelista FA. Theoretical Calculation of Core-Excited States along Dissociative Pathways beyond Second-Order Perturbation Theory. J Chem Theory Comput 2021; 18:219-233. [PMID: 34964628 DOI: 10.1021/acs.jctc.1c00884] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
We extend the multireference driven similarity renormalization (MR-DSRG) method to compute core-excited states by combining it with a GASSCF treatment of orbital relaxation and static electron correlation effects. We consider MR-DSRG treatments of dynamical correlation truncated at the level of perturbation theory (DSRG-MRPT2/3) and iterative linearized approximations with one- and two-body operators [MR-LDSRG(2)] in combination with a spin-free exact-two-component (X2C) one-electron treatment of scalar relativistic effects. This approach is calibrated and tested on a series of 16 core-excited states of five closed- and open-shell diatomic molecules containing first-row elements (C, N, and O). All GASSCF-MR-DSRG theories show excellent agreement with experimental adiabatic transitions energies, with mean absolute errors ranging between 0.17 and 0.35 eV, even for the challenging partially doubly excited states of the N2+ molecule. The vibrational structure of all these transitions, obtained from using a full potential energy scan, shows a mean absolute error as low as 25 meV for DSRG-MRPT2 and 12/13 meV for DSRG-MRPT3 and MR-LDSRG(2). We generally find that a treatment of dynamical correlation that goes beyond the second-order level in perturbation theory improves the accuracy of the potential energy surface, especially in the bond-dissociation region.
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Affiliation(s)
- Meng Huang
- Department of Chemistry and Cherry Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
| | - Chenyang Li
- Department of Chemistry and Cherry Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States.,Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - Francesco A Evangelista
- Department of Chemistry and Cherry Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
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12
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Misiewicz JP, Turney JM, Schaefer HF. Cumulants as the variables of density cumulant theory: A path to Hermitian triples. J Chem Phys 2021; 155:244105. [PMID: 34972366 DOI: 10.1063/5.0076888] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We study the combination of orbital-optimized density cumulant theory and a new parameterization of reduced density matrices in which the variables are the particle-hole cumulant elements. We call this combination OλDCT. We find that this new Ansatz solves problems identified in the previous unitary coupled cluster Ansatz for density cumulant theory: the theory is now free of near-zero denominators between occupied and virtual blocks, can correctly describe the dissociation of H2, and is rigorously size-extensive. In addition, the new Ansatz has fewer terms than the previous unitary Ansatz, and the optimal orbitals delivered by the exact theory are the natural orbitals. Numerical studies on systems amenable to full configuration interaction show that the amplitudes from the previous ODC-12 method approximate the exact amplitudes predicted by this Ansatz. Studies on equilibrium properties of diatomic molecules show that even with the new Ansatz, it is necessary to include triples to improve the accuracy of the method compared to orbital-optimized linearized coupled cluster doubles. With a simple iterative triples correction, OλDCT outperforms other orbital-optimized methods truncated at comparable levels in the amplitudes, as well as coupled cluster single and doubles with perturbative triples [CCSD(T)]. By adding four more terms to the cumulant parameterization, OλDCT outperforms CCSDT while having the same O(V5O3) scaling.
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Affiliation(s)
- Jonathon P Misiewicz
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Justin M Turney
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Henry F Schaefer
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
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13
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Ranga S, Dutta AK. A Core-Valence Separated Similarity Transformed EOM-CCSD Method for Core-Excitation Spectra. J Chem Theory Comput 2021; 17:7428-7446. [PMID: 34814683 DOI: 10.1021/acs.jctc.1c00402] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We present the theory and implementation of a core-valence separated similarity transformed EOM-CCSD (STEOM-CCSD) method for K-edge core excitation spectra. The method can select an appropriate active space using CIS natural orbitals and near "black box" to use. The second similarity transformed Hamiltonian is diagonalized in the space of single excitation. Therefore, the final diagonalization step is free from the convergence problem arising due to the coupling of the core-excited states with the continuum of doubly excited states. Convergence trouble can appear for the preceding core-ionized state calculation in STEOM-CCSD. A core-valence separation (CVS) scheme compatible with the natural orbital based active space selection (CVS-STEOM-CCSD-NO) is implemented to overcome the problem. The CVS-STEOM-CCSD-NO has a similar accuracy to that of the standard CVS-EOM-CCSD method but comes with a lower computational cost. The modification required in the CVS scheme to make use of the CIS natural orbital is highlighted. The suitability of the CVS-STEOM-CCSD-NO method for chemical application is demonstrated by simulating the K-edge spectra of glycine and thymine.
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Affiliation(s)
- Santosh Ranga
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
| | - Achintya Kumar Dutta
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
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14
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Rankine CD, Penfold TJ. Progress in the Theory of X-ray Spectroscopy: From Quantum Chemistry to Machine Learning and Ultrafast Dynamics. J Phys Chem A 2021; 125:4276-4293. [DOI: 10.1021/acs.jpca.0c11267] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- C. D. Rankine
- Chemistry—School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, U.K
| | - T. J. Penfold
- Chemistry—School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, U.K
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15
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Fransson T, Brumboiu IE, Vidal ML, Norman P, Coriani S, Dreuw A. XABOOM: An X-ray Absorption Benchmark of Organic Molecules Based on Carbon, Nitrogen, and Oxygen 1s → π* Transitions. J Chem Theory Comput 2021; 17:1618-1637. [PMID: 33544612 PMCID: PMC8023667 DOI: 10.1021/acs.jctc.0c01082] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2020] [Indexed: 01/05/2023]
Abstract
The performance of several standard and popular approaches for calculating X-ray absorption spectra at the carbon, nitrogen, and oxygen K-edges of 40 primarily organic molecules up to the size of guanine has been evaluated, focusing on the low-energy and intense 1s → π* transitions. Using results obtained with CVS-ADC(2)-x and fc-CVS-EOM-CCSD as benchmark references, we investigate the performance of CC2, ADC(2), ADC(3/2), and commonly adopted density functional theory (DFT)-based approaches. Here, focus is on precision rather than on accuracy of transition energies and intensities-in other words, we target relative energies and intensities and the spread thereof, rather than absolute values. The use of exchange-correlation functionals tailored for time-dependent DFT calculations of core excitations leads to error spreads similar to those seen for more standard functionals, despite yielding superior absolute energies. Long-range corrected functionals are shown to perform particularly well compared to our reference data, showing error spreads in energy and intensity of 0.2-0.3 eV and ∼10%, respectively, as compared to 0.3-0.6 eV and ∼20% for a typical pure hybrid. In comparing intensities, state mixing can complicate matters, and techniques to avoid this issue are discussed. Furthermore, the influence of basis sets in high-level ab initio calculations is investigated, showing that reasonably accurate results are obtained with the use of 6-311++G**. We name this benchmark suite as XABOOM (X-ray absorption benchmark of organic molecules) and provide molecular structures and ground-state self-consistent field energies and spectroscopic data. We believe that it provides a good assessment of electronic structure theory methods for calculating X-ray absorption spectra and will become useful for future developments in this field.
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Affiliation(s)
- Thomas Fransson
- Interdisciplinary
Center for Scientific Computing, Ruprecht-Karls
University, Im Neuenheimer
Feld 205, 69120 Heidelberg, Germany
- Fysikum, Stockholm University, Albanova, 10691 Stockholm, Sweden
| | - Iulia E. Brumboiu
- Department
of Theoretical Chemistry and Biology, KTH
Royal Institute of Technology, 10691 Stockholm, Sweden
- Department
of Chemistry, Korea Advanced Institute of
Science and Technology, 34141 Daejeon, Korea
| | - Marta L. Vidal
- DTU
Chemistry, Technical University of Denmark, Kemitorvet Bldg 207, DK-2800 Kongens Lyngby, Denmark
| | - Patrick Norman
- Department
of Theoretical Chemistry and Biology, KTH
Royal Institute of Technology, 10691 Stockholm, Sweden
| | - Sonia Coriani
- DTU
Chemistry, Technical University of Denmark, Kemitorvet Bldg 207, DK-2800 Kongens Lyngby, Denmark
- Department
of Chemistry, NTNU-Norwegian University
of Science and Technology, N-7991 Trondheim, Norway
| | - Andreas Dreuw
- Interdisciplinary
Center for Scientific Computing, Ruprecht-Karls
University, Im Neuenheimer
Feld 205, 69120 Heidelberg, Germany
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16
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Tsuru S, Vidal ML, Pápai M, Krylov AI, Møller KB, Coriani S. An assessment of different electronic structure approaches for modeling time-resolved x-ray absorption spectroscopy. STRUCTURAL DYNAMICS (MELVILLE, N.Y.) 2021; 8:024101. [PMID: 33786337 PMCID: PMC7986275 DOI: 10.1063/4.0000070] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Accepted: 02/11/2021] [Indexed: 05/06/2023]
Abstract
We assess the performance of different protocols for simulating excited-state x-ray absorption spectra. We consider three different protocols based on equation-of-motion coupled-cluster singles and doubles, two of them combined with the maximum overlap method. The three protocols differ in the choice of a reference configuration used to compute target states. Maximum-overlap-method time-dependent density functional theory is also considered. The performance of the different approaches is illustrated using uracil, thymine, and acetylacetone as benchmark systems. The results provide guidance for selecting an electronic structure method for modeling time-resolved x-ray absorption spectroscopy.
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Affiliation(s)
- Shota Tsuru
- DTU Chemistry, Technical University of Denmark, Kemitorvet Building 207, DK-2800 Kgs. Lyngby, Denmark
| | - Marta L. Vidal
- DTU Chemistry, Technical University of Denmark, Kemitorvet Building 207, DK-2800 Kgs. Lyngby, Denmark
| | - Mátyás Pápai
- DTU Chemistry, Technical University of Denmark, Kemitorvet Building 207, DK-2800 Kgs. Lyngby, Denmark
| | - Anna I. Krylov
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, USA
| | - Klaus B. Møller
- DTU Chemistry, Technical University of Denmark, Kemitorvet Building 207, DK-2800 Kgs. Lyngby, Denmark
| | - Sonia Coriani
- DTU Chemistry, Technical University of Denmark, Kemitorvet Building 207, DK-2800 Kgs. Lyngby, Denmark
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17
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Misiewicz JP, Turney JM, Schaefer HF, Sokolov AY. Assessing the orbital-optimized unitary Ansatz for density cumulant theory. J Chem Phys 2020; 153:244102. [PMID: 33380073 DOI: 10.1063/5.0036512] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
The previously proposed Ansatz for density cumulant theory that combines orbital-optimization and a parameterization of the 2-electron reduced density matrix cumulant in terms of unitary coupled cluster amplitudes (OUDCT) is carefully examined. Formally, we elucidate the relationship between OUDCT and orbital-optimized unitary coupled cluster theory and show the existence of near-zero denominators in the stationarity conditions for both the exact and some approximate OUDCT methods. We implement methods of the OUDCT Ansatz restricted to double excitations for numerical study, up to the fifth commutator in the Baker-Campbell-Hausdorff expansion. We find that methods derived from the Ansatz beyond the previously known ODC-12 method tend to be less accurate for equilibrium properties and less reliable when attempting to describe H2 dissociation. New developments are needed to formulate more accurate density cumulant theory variants.
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Affiliation(s)
- Jonathon P Misiewicz
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Justin M Turney
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Henry F Schaefer
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Alexander Yu Sokolov
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, USA
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18
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Garner SM, Neuscamman E. Core excitations with excited state mean field and perturbation theory. J Chem Phys 2020; 153:154102. [PMID: 33092351 DOI: 10.1063/5.0020595] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
Abstract
We test the efficacy of excited state mean field theory and its excited-state-specific perturbation theory on the prediction of K-edge positions and x-ray peak separations. We find that the mean field theory is surprisingly accurate, even though it contains no accounting of differential electron correlation effects. In the perturbation theory, we test multiple core-valence separation schemes and find that, with the mean field theory already so accurate, electron-counting biases in one popular separation scheme become a dominant error when predicting K-edges. Happily, these appear to be relatively easy to correct for, leading to a perturbation theory for K-edge positions that is lower scaling and more accurate than coupled cluster theory and competitive in accuracy with recent high-accuracy results from restricted open-shell Kohn-Sham theory. For peak separations, our preliminary data show excited state mean field theory to be exceptionally accurate, but more extensive testing will be needed to see how it and its perturbation theory compare to coupled cluster peak separations more broadly.
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Affiliation(s)
- Scott M Garner
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Eric Neuscamman
- Department of Chemistry, University of California, Berkeley, California 94720, USA
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19
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Garner SM, Neuscamman E. A variational Monte Carlo approach for core excitations. J Chem Phys 2020; 153:144108. [DOI: 10.1063/5.0020310] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Affiliation(s)
- Scott M. Garner
- Department of Chemistry, University of California, Berkeley, California 94720, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Eric Neuscamman
- Department of Chemistry, University of California, Berkeley, California 94720, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
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20
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Misiewicz JP, Turney JM, Schaefer HF. Reduced Density Matrix Cumulants: The Combinatorics of Size-Consistency and Generalized Normal Ordering. J Chem Theory Comput 2020; 16:6150-6164. [PMID: 32866012 DOI: 10.1021/acs.jctc.0c00422] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Reduced density matrix cumulants play key roles in the theory of both reduced density matrices and multiconfigurational normal ordering. We present a new, simpler generating function for reduced density matrix cumulants that is formally identical with equating the coupled cluster and configuration interaction ansätze. This is shown to be a general mechanism to convert between a multiplicatively separable quantity and an additively separable quantity, as defined by a set of axioms. It is shown that both the cumulants of probability theory and the reduced density matrices are entirely combinatorial constructions, where the differences can be associated with changes in the notion of "multiplicative separability" for expectation values of random variables compared to reduced density matrices. We compare our generating function to that of previous works and criticize previous claims of probabilistic significance of the reduced density matrix cumulants. Finally, we present a simple proof of the generalized normal ordering formalism to explore the role of reduced density matrix cumulants therein. While the formalism can be used without cumulants, the combinatorial structure of expressing RDMs in terms of cumulants is the same combinatorial structure on cumulants that allows for a simple extended generalized Wick's theorem.
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Affiliation(s)
- Jonathon P Misiewicz
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia, 30602, United States
| | - Justin M Turney
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia, 30602, United States
| | - Henry F Schaefer
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia, 30602, United States
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21
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Li X, Govind N, Isborn C, DePrince AE, Lopata K. Real-Time Time-Dependent Electronic Structure Theory. Chem Rev 2020; 120:9951-9993. [DOI: 10.1021/acs.chemrev.0c00223] [Citation(s) in RCA: 64] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Xiaosong Li
- Department of Chemistry, University of Washington, Seattle, Washington 98195-1700, United States
| | - Niranjan Govind
- Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Christine Isborn
- Department of Chemistry and Chemical Biology, University of California, Merced, California 95343, United States
| | - A. Eugene DePrince
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306-4390, United States
| | - Kenneth Lopata
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
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22
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Herbst MF, Fransson T. Quantifying the error of the core-valence separation approximation. J Chem Phys 2020; 153:054114. [PMID: 32770930 DOI: 10.1063/5.0013538] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
For the calculation of core-excited states probed through X-ray absorption spectroscopy, the core-valence separation (CVS) scheme has become a vital tool. This approach allows us to target such states with high specificity, albeit introducing an error. We report the implementation of a post-processing step for CVS excitations obtained within the algebraic-diagrammatic construction scheme for the polarization propagator, which removes this error. Based on this, we provide a detailed analysis of the CVS scheme, identifying its accuracy to be dominated by an error balance between two neglected couplings, one between core and valence single excitations and the other between single and double core excitations. The selection of the basis set is shown to be vital for a proper description of both couplings, with tight polarizing functions being necessary for a good balance of errors. The CVS error is confirmed to be stable across multiple systems, with an element-specific spread for K-edge spectrum calculations of only about ±0.02 eV. A systematic lowering of the CVS error by 0.02 eV-0.03 eV is noted when considering excitations to extremely diffuse states, emulating ionization.
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Affiliation(s)
- Michael F Herbst
- CERMICS, École des Ponts ParisTech, 6-8 Avenue Blaise Pascal, 77455 Marne-la-Vallée, France; Inria Paris, 75589 Paris Cedex 12, France; and Sorbonne Universitée, Institut des Sciences du Calcul et des Données, ISCD, 75005 Paris, France
| | - Thomas Fransson
- Interdisciplinary Center for Scientific Computing, Heidelberg University, 69120 Heidelberg, Germany and Fysikum, Stockholm University, Albanova, 10691 Stockholm, Sweden
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23
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Herbst MF, Scheurer M, Fransson T, Rehn DR, Dreuw A. adcc: A versatile toolkit for rapid development of algebraic‐diagrammatic construction methods. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2020. [DOI: 10.1002/wcms.1462] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Michael F. Herbst
- CERMICS, École des Ponts ParisTech Marne‐la‐Vallée France
- Inria Paris Paris Cedex 12 France
- Sorbonne Université Institut des sciences du calcul et des données, ISCD Paris France
| | - Maximilian Scheurer
- Interdisciplinary Center for Scientific Computing Heidelberg University Heidelberg Germany
| | - Thomas Fransson
- Interdisciplinary Center for Scientific Computing Heidelberg University Heidelberg Germany
- Fysikum Stockholm University Stockholm Sweden
| | - Dirk R. Rehn
- Interdisciplinary Center for Scientific Computing Heidelberg University Heidelberg Germany
| | - Andreas Dreuw
- Interdisciplinary Center for Scientific Computing Heidelberg University Heidelberg Germany
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