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Vandaele E, Mališ M, Luber S. A Local Diabatisation Method for Two-State Adiabatic Conical Intersections. J Chem Theory Comput 2024; 20:856-872. [PMID: 38174710 DOI: 10.1021/acs.jctc.3c01008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2024]
Abstract
A methodology to locally characterize conical intersections (CIs) between two adiabatic electronic states for which no nonadiabatic coupling (NAC) vectors are available is presented. Based on the Hessian and gradient at the CI, the branching space coordinates are identified. The potential energy surface around the CI in the branching space is expressed in the diabatic representation, from which the NAC vectors can be calculated in a wave-function-free, energy-based approach. To demonstrate the universality of the developed methodology, the minimum-energy CI (MECI) between the first (S1) and second (S2) singlet excited states of formamide is investigated at the state-averaged complete active space self-consistent field (SA-CASSCF) and extended multistate complete active space second-order perturbation theory (XMS-CASPT2) levels of theory. In addition, the asymmetrical MECI between the ground state (S0) and S1 of cyclopropanone is evaluated using SA-CASSCF, as well as (ME)CIs between the S1 and S2 states of benzene using SA-CASSCF and time-dependent density functional theory (TDDFT). Finally, a CI between the S1 and S2 excited states of thiophene was analyzed using TDDFT.
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Affiliation(s)
- Eva Vandaele
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, 8057 Zürich, Switzerland
| | - Momir Mališ
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, 8057 Zürich, Switzerland
| | - Sandra Luber
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, 8057 Zürich, Switzerland
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2
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Peng X, Zeng L, Wang D, Liu Z, Li Y, Li Z, Yang B, Lei L, Dai L, Hou Y. Electrochemical C-N coupling of CO 2 and nitrogenous small molecules for the electrosynthesis of organonitrogen compounds. Chem Soc Rev 2023; 52:2193-2237. [PMID: 36806286 DOI: 10.1039/d2cs00381c] [Citation(s) in RCA: 15] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2023]
Abstract
Electrochemical C-N coupling reactions based on abundant small molecules (such as CO2 and N2) have attracted increasing attention as a new "green synthetic strategy" for the synthesis of organonitrogen compounds, which have been widely used in organic synthesis, materials chemistry, and biochemistry. The traditional technology employed for the synthesis of organonitrogen compounds containing C-N bonds often requires the addition of metal reagents or oxidants under harsh conditions with high energy consumption and environmental concerns. By contrast, electrosynthesis avoids the use of other reducing agents or oxidants by utilizing "electrons", which are the cleanest "reagent" and can reduce the generation of by-products, consistent with the atomic economy and green chemistry. In this study, we present a comprehensive review on the electrosynthesis of high value-added organonitrogens from the abundant CO2 and nitrogenous small molecules (N2, NO, NO2-, NO3-, NH3, etc.) via the C-N coupling reaction. The associated fundamental concepts, theoretical models, emerging electrocatalysts, and value-added target products, together with the current challenges and future opportunities are discussed. This critical review will greatly increase the understanding of electrochemical C-N coupling reactions, and thus attract research interest in the fixation of carbon and nitrogen.
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Affiliation(s)
- Xianyun Peng
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, China.
- Institute of Zhejiang University - Quzhou, Quzhou, 324000, China
| | - Libin Zeng
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, China.
- Institute of Zhejiang University - Quzhou, Quzhou, 324000, China
| | - Dashuai Wang
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, China.
- Institute of Zhejiang University - Quzhou, Quzhou, 324000, China
| | - Zhibin Liu
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, China.
- Institute of Zhejiang University - Quzhou, Quzhou, 324000, China
| | - Yan Li
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, China.
- Australian Carbon Materials Centre (A-CMC), School of Chemical Engineering, University of New South Wales, Sydney, NSW, 2052, Australia.
| | - Zhongjian Li
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, China.
- Institute of Zhejiang University - Quzhou, Quzhou, 324000, China
| | - Bin Yang
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, China.
- Institute of Zhejiang University - Quzhou, Quzhou, 324000, China
| | - Lecheng Lei
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, China.
- Institute of Zhejiang University - Quzhou, Quzhou, 324000, China
| | - Liming Dai
- Australian Carbon Materials Centre (A-CMC), School of Chemical Engineering, University of New South Wales, Sydney, NSW, 2052, Australia.
| | - Yang Hou
- College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310027, China.
- Institute of Zhejiang University - Quzhou, Quzhou, 324000, China
- Donghai Laboratory, Zhoushan, China
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Asha S, Thomas A, Suma S, K R, Sandhya K, Siddlingeshwar B, Sudarsanakumar M. STRUCTURAL STUDIES OF A NOVEL TAUTOMERIC SCHIFF BASE DERIVED FROM 4-(N,N’-DIETHYLAMINO)SALICYLALDEHYDE AND 2-AMINO-4-METHYL PHENOL: AN EXPERIMENTAL AND THEORETICAL STUDY. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2023.135468] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2023]
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Volosatova AD, Tyurin DA, Feldman VI. The Radiation Chemistry of NH 3···CO Complex in Cryogenic Media as Studied by Matrix Isolation. J Phys Chem A 2022; 126:3893-3902. [PMID: 35696324 DOI: 10.1021/acs.jpca.2c01774] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The NH3···CO complex can be considered an important building block for cold synthetic astrochemistry leading to the formation of complex organic molecules, including key prebiotic species. In this work, we have studied the radiation-induced transformations of this complex in Ar, Kr, and Xe matrices using FTIR spectroscopy. On the basis of comparison with the quantum chemical calculations at the CCSD(T)/L2a_3 level of theory, it was found that the initial complex had the configuration with hydrogen bonding through the carbon atom of CO. Irradiation of the matrix isolated complex with X-rays at 6 K leads to the formation of a number of synthetic products, namely, HNCO (in all matrices), formamide NH2CHO, NH2CO, and HNCO-H2 (in argon and krypton). The matrix effect on the product distribution was explained by the involvement of different excited states of the complex in their formation. It was suggested that formamide results from the singlet excited states while other species mainly originate from triplet excited states. The latter states are efficiently populated through ion-electron recombination (in all matrices) and through intersystem crossing (particularly, in xenon). High yield of the recombination triplet states is a feature of the processes induced by high-energy radiation (in contrast to direct photolysis). NCO, CN, and NO were found as minor secondary products at high adsorbed doses. The astrochemical implications of the obtained results are discussed.
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Affiliation(s)
| | - Daniil A Tyurin
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russia
| | - Vladimir I Feldman
- Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russia
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Derbali I, Thissen R, Alcaraz C, Romanzin C, Zins EL. Study of the Reactivity of CH 3COOH +• and COOH + Ions with CH 3NH 2: Evidence of the Formation of New Peptide-like C(O)-N Bonds. J Phys Chem A 2021; 125:10006-10020. [PMID: 34761946 DOI: 10.1021/acs.jpca.1c06630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Acetamide, a small organic compound containing a peptide bond, was observed in the interstellar medium, but reaction pathways leading to the formation of this prebiotic molecule remain uncertain. We investigated the possible formation of a peptide-like bond from the reaction between acetic acid (CH3-COOH) and methylamine (CH3-NH2) that were identified in the interstellar medium. From an experimental point of view, a quadrupole/octopole/quadrupole mass spectrometer was used in combination with synchrotron radiation as a tunable source of VUV photons for monitoring the reactivity of selected ions. Acetic acid was photoionized, and the reactivity of CH3COOH+• as well as COOH+ (produced from either acetic acid or formic acid) ions with neutral CH3NH2 was further studied. With no surprise, charge transfer, proton transfer, and concomitant dissociation processes were found to largely dominate the reactivity. However, a C(O)-N bond formation process between the two reactants was also evidenced, with a weak cross section reaction. From a theoretical point of view, results concerning reactivity and barrier heights were obtained using density functional theory, with the LC-ωPBE range-separated functional in combination with the 6-311++G(d,p) Pople basis set and are in perfect agreement with the experimental data.
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Affiliation(s)
- Imene Derbali
- De la Molécule aux Nano-Objets: Réactivité, Interactions Spectroscopies, MONARIS, Sorbonne Université, CNRS, 75005 Paris, France
| | - Roland Thissen
- Institut de Chimie Physique, UMR 8000, Université Paris-Saclay, CNRS, Bât. 350, 91405 Orsay, France.,SOLEIL Synchrotron, L'Orme des Merisiers, Saint-Aubin, BP 48, 91192 Gif-sur-Yvette, France
| | - Christian Alcaraz
- Institut de Chimie Physique, UMR 8000, Université Paris-Saclay, CNRS, Bât. 350, 91405 Orsay, France.,SOLEIL Synchrotron, L'Orme des Merisiers, Saint-Aubin, BP 48, 91192 Gif-sur-Yvette, France
| | - Claire Romanzin
- Institut de Chimie Physique, UMR 8000, Université Paris-Saclay, CNRS, Bât. 350, 91405 Orsay, France.,SOLEIL Synchrotron, L'Orme des Merisiers, Saint-Aubin, BP 48, 91192 Gif-sur-Yvette, France
| | - Emilie-Laure Zins
- De la Molécule aux Nano-Objets: Réactivité, Interactions Spectroscopies, MONARIS, Sorbonne Université, CNRS, 75005 Paris, France
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Sitha S. Tetrel bonding in the realm of transition states favors silicon over Carbon: Role of water as a tetrel spectator in the formation of silaformamide. COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2021.113456] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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7
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A computational study on the formations of formamide analogues: Interesting chemistry by silicon analogues. COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2021.113290] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Hydrogenations of Isocyanic Acid: A Computational Study on Four Possible Concerted Paths for Formamide Formation. Theor Chem Acc 2021. [DOI: 10.1007/s00214-021-02750-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Thripati S, Ramabhadran RO. Pathways for the Formation of Formamide, a Prebiotic Biomonomer: Metal-Ions in Interstellar Gas-Phase Chemistry. J Phys Chem A 2021; 125:3457-3472. [PMID: 33861935 DOI: 10.1021/acs.jpca.1c02132] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The chemistry occurring in the interstellar medium (ISM) is an active area of contemporary research. New aspects of interstellar chemistry are getting unraveled regularly. In this context, the role of metal-ions in the chemistry occurring in the ISM is not well-studied so far. Herein, we highlight the role of metal-ions in interstellar chemistry. For this purpose, we choose the problem of gas-phase formamide formation in interstellar molecular clouds. Formamide is a key biomonomer and contains the simplest peptide [-(C═O)-NH-] linkage. With its two electronegative atoms ("O" and "N"), it provides an excellent platform to probe the role of the metal-ions. The metal-ions chosen are Na+, K+, Al+, Mg+, and Mg2+-all of them present in the ISM. The metal-ions are studied in three different forms as bare positively charged ions, as hydrated metal-ions co-ordinated with a molecule of water, and when the metal-ions are part of a neutral covalent molecule. With the aid of electronic structure calculations [CCSD(T) and DFT methods], we study different gas-phase pathways which result in the generation of interstellar formamide. Throughout our study, we find that metal-ions lower the barriers (with Mg+, Mg++, and Al+ offering maximal stabilization of the transition states) and facilitate the reactions. The chemical factors influencing the reactions, how we consider the putative conditions in the ISM, the astrochemical implications of this study, and its connection with terrestrial prebiotic chemistry and refractory astrochemistry are subsequently presented. Based on our results, we also recommend the detection of two new closed-shell molecules, NH2CH2OH (aminomethanol) and CH2NH2+ (iminium ion), and two open-shell molecules, CONH2 (carbamyl radical) and HCONH (an isomer of carbamyl radical), in the ISM.
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Affiliation(s)
- Sorakayala Thripati
- Department of Chemistry, Indian Institute of Science Education and Research, Tirupati Andhra Pradesh 517507, India.,Center for Atomic, Molecular, and Optical Sciences and Technologies (CAMOST), Tirupati, Andhra Pradesh 517507, India
| | - Raghunath O Ramabhadran
- Department of Chemistry, Indian Institute of Science Education and Research, Tirupati Andhra Pradesh 517507, India.,Center for Atomic, Molecular, and Optical Sciences and Technologies (CAMOST), Tirupati, Andhra Pradesh 517507, India
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Darla N, Sharma D, Sitha S. Formation of Formamide from HCN + H 2O: A Computational Study on the Roles of a Second H 2O as a Catalyst, as a Spectator, and as a Reactant. J Phys Chem A 2019; 124:165-175. [PMID: 31820987 DOI: 10.1021/acs.jpca.9b09924] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Formamide (NH2CHO), being the smallest and fundamental building block of life (with a peptide linkage), has recently been able to attract much interests, in the field of astrochemistry, astrophysics, and astrobiology. In this work, using quantum mechanical computations, reactions between HCN and H2O, leading to the formation of formamide, have been analyzed. For the first time, an alternative and competing reaction channel, which proceeds via a geminal diol intermediate, for the formation of formamide, has been proposed. In this alternative channel, an extra water molecule (second H2O) was found to be acting as a reactant, in the second step of the reaction path. Effects of second H2O molecule in the reaction paths, providing catalytic assistance to the reaction or behaving like a spectator (concept is introduced for the first time for this reaction), have also been analyzed. Usefulness of spectator behavior is highlighted for the reactions happening on the rigid water-ice surfaces, where the water-ice may not be getting involved for any catalytic assistance. In light of catalytic assistances provided by the second H2O, prominent effects in reducing the barrier heights drastically (even for the second step of the reaction, the barrier height was found to be below the reactants), through a hydrogen relay transport mechanism, were observed. In addition to the mechanism studies, interstellar feasibilities of all the reaction channels and their significances are discussed in detail.
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Affiliation(s)
- Nagasuneetha Darla
- Department of Chemical Sciences , University of Johannesburg , P.O. Box 524, Auckland Park, Johannesburg , South Africa 2006
| | - Divya Sharma
- Department of Chemical Sciences , University of Johannesburg , P.O. Box 524, Auckland Park, Johannesburg , South Africa 2006
| | - Sanyasi Sitha
- Department of Chemical Sciences , University of Johannesburg , P.O. Box 524, Auckland Park, Johannesburg , South Africa 2006
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