1
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Vu Nhat P, Duy NVA, Tran TN, Si NT, Nguyen TA, To Van N, Van Nghia N, Schall P, Dinh VA, Dang MT. Optoelectronic Properties of Nitrogen-Doped Hexagonal Graphene Quantum Dots: A First-Principles Study. ACS OMEGA 2024; 9:20056-20065. [PMID: 38737018 PMCID: PMC11079900 DOI: 10.1021/acsomega.3c10501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Revised: 04/11/2024] [Accepted: 04/11/2024] [Indexed: 05/14/2024]
Abstract
Graphene quantum dots have been widely studied owing to their unique optical, electrical, and optoelectrical properties for various applications in solar devices. Here, we investigate the optoelectronic properties of hexagonal and nitrogen-doped graphene quantum dots using the first-principles method. We find that doping nitrogen atoms to hexagonal graphene quantum dots results in a significant red shift toward the visible light range as compared to that of the pristine graphene quantum dots, and the doped nitrogen atoms also induce a clear signature of anisotropy of the frontier orbitals induced by the electron correlation between the doped nitrogen atoms and their adjacent carbon atoms. Moreover, time-dependent density functional theory calculations with the M06-2X functional and 6-311++G(d,p) basis set reproduce well the experimental absorption spectra reported recently. These results provide us with a novel approach for more systematic investigations on next-generation solar devices with assembled quantum dots to improve their light selectivity as well as efficiency.
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Affiliation(s)
- Pham Vu Nhat
- Can
Tho University, 3-2 Road, Can Tho 900000, Vietnam
| | - Nguyen Vo Anh Duy
- FPT
University, Can Tho Campus, 600 Nguyen Van Cu Street, Ninh Kieu, Can Tho 900000, Vietnam
| | - Thi Nhan Tran
- Faculty
of Fundamental Sciences, Hanoi University
of Industry, 298 Cau Dien Road, Hanoi 100000, Vietnam
| | - Nguyen Thanh Si
- Institute
of Environmental Science and Technology, Tra Vinh University, Tra Vinh 94000, Vietnam
| | - Truc Anh Nguyen
- Faculty
of Mechanics, Can Tho University of Technology, 256 Nguyen Van Cu Street, Can Tho 900000, Vietnam
| | - Nguyen To Van
- Faculty of
Chemico-Physical Engineering, Le Quy Don
Technical University, Ha Noi 100000, Vietnam
| | - Nguyen Van Nghia
- Open
Training Institute, Hanoi Architectural
University, Km10, Nguyen Trai Street, Hanoi 100000, Vietnam
| | - Peter Schall
- Van
der Waals-Zeeman Institute, University of
Amsterdam, Science Park
904, Amsterdam 1098 XH, The Netherlands
| | - Van An Dinh
- Department
of Precision Engineering, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka 565-0871, Japan
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2
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Fronzi M, Amos RD, Kobayashi R. Evaluation of Machine Learning Interatomic Potentials for Gold Nanoparticles-Transferability towards Bulk. NANOMATERIALS (BASEL, SWITZERLAND) 2023; 13:1832. [PMID: 37368262 DOI: 10.3390/nano13121832] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 05/22/2023] [Accepted: 06/06/2023] [Indexed: 06/28/2023]
Abstract
We analyse the efficacy of machine learning (ML) interatomic potentials (IP) in modelling gold (Au) nanoparticles. We have explored the transferability of these ML models to larger systems and established simulation times and size thresholds necessary for accurate interatomic potentials. To achieve this, we compared the energies and geometries of large Au nanoclusters using VASP and LAMMPS and gained better understanding of the number of VASP simulation timesteps required to generate ML-IPs that can reproduce the structural properties. We also investigated the minimum atomic size of the training set necessary to construct ML-IPs that accurately replicate the structural properties of large Au nanoclusters, using the LAMMPS-specific heat of the Au147 icosahedral as reference. Our findings suggest that minor adjustments to a potential developed for one system can render it suitable for other systems. These results provide further insight into the development of accurate interatomic potentials for modelling Au nanoparticles through machine learning techniques.
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Affiliation(s)
- Marco Fronzi
- School of Chemical and Biomedical Engineering, University of Melbourne, Parkville, VIC 3010, Australia
- School of Mathematical and Physical Sciences, University of Technology Sydney, Ultimo, NSW 2007, Australia
| | - Roger D Amos
- School of Mathematical and Physical Sciences, University of Technology Sydney, Ultimo, NSW 2007, Australia
| | - Rika Kobayashi
- Supercomputer Facility, Australian National University, Canberra, ACT 2601, Australia
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3
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Nhat PV, Si NT, Fielicke A, Kiselev VG, Nguyen MT. A new look at the structure of the neutral Au 18 cluster: hollow versus filled golden cage. Phys Chem Chem Phys 2023; 25:9036-9042. [PMID: 36919716 DOI: 10.1039/d2cp05422a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
Abstract
The geometry of the neutral Au18 gold cluster was probed by a combination of quantum chemical calculations and far-infrared multiple photon dissociation (FIR-MPD) spectroscopy of a Kr messenger complex. Two low-lying isomers are identified to potentially contribute to the experimental IR spectrum, both being derived from a star-like Au17 structure upon capping with one extra Au atom either inside (18_1) or outside (18_5) the star. In particular, the present detection of structure 18_1 by DFT computations where a golden cage encapsulates an endohedral Au atom, is intriguing as a stable core-shell isomer has, to our knowledge, never been found before for such small neutral gold clusters. DFT and local coupled-cluster (DLPNO and PNO-CCSD(T)) computations indicate that both Au18 isomers are close to each other, within ∼3 kcal mol-1, on the energy scale. Although the exact energy ordering is again method-dependent and remains, at present, inconclusive, the most striking spectral signatures of both isomers are related to vibrational modes localized at atoms capping the inner pentaprism sub-structure that result in prominent peaks centered at ∼80 cm-1, close to the most prominent experimental feature found at 78 cm-1. The calculated IR spectra of both core-shell and hollow isomers are very similar to each other and both agree comparably well with the experimental FIR-MPD spectra of the Au18Kr1,2 complexes.
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Affiliation(s)
- Pham Vu Nhat
- Department of Chemistry, Can Tho University, Can Tho, Vietnam.,Molecular and Materials Modeling Laboratory, Can Tho University, Can Tho, Vietnam
| | - Nguyen Thanh Si
- Department of Chemistry, Can Tho University, Can Tho, Vietnam
| | - André Fielicke
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, Berlin, Germany
| | - Vitaly G Kiselev
- Novosibirsk State University, 1 Pirogova Str., 630090 Novosibirsk, Russia.,Institute of Chemical Kinetics and Combustion SB RAS, 3 Institutskaya Str., 630090 Novosibirsk, Russia
| | - Minh Tho Nguyen
- Institute for Computational Science and Technology (ICST), Ho Chi Minh City, Vietnam.
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4
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Hasegawa S, Masuda S, Takano S, Harano K, Kikkawa J, Tsukuda T. Synergistically Activated Pd Atom in Polymer-Stabilized Au 23Pd 1 Cluster. ACS NANO 2022; 16:16932-16940. [PMID: 36191255 DOI: 10.1021/acsnano.2c06996] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Single Pd atom doped Au23Pd1 clusters stabilized by polyvinylpyrrolidone (Au23Pd1:PVP) were selectively synthesized by kinetically controlled coreduction of the Au and Pd precursor ions. The geometric structure of Au23Pd1:PVP was investigated by density functional theory calculation, aberration-corrected transmission electron microscopy, extended X-ray absorption fine structure analysis, Fourier transform infrared spectroscopy of adsorbed CO, and hydrogenation catalysis. These results showed that Au23Pd1:PVP takes polydisperse but the same atomic arrangements as undoped Au24:PVP while exposing all the atoms including the Pd atom on the surface. Au23Pd1:PVP exhibited a significantly higher catalytic activity than Au24:PVP for the aerobic oxidation of p-substituted benzyl alcohols. The kinetic studies showed that the rate-determining step was the hydride abstraction from the α-carbon of the alkoxides for both systems. The activation energy for hydride abstraction by Au23Pd1:PVP was lower than that by Au24:PVP, indicating that the doped Pd atom acts as the active center.
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Affiliation(s)
- Shingo Hasegawa
- Department of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo113-0033, Japan
| | - Shinya Masuda
- Department of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo113-0033, Japan
| | - Shinjiro Takano
- Department of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo113-0033, Japan
| | - Koji Harano
- Research Center for Advanced Measurement and Characterization, National Institute for Materials Science, 1-1 Namiki, Tsukuba, Ibaraki305-0044, Japan
| | - Jun Kikkawa
- Research Center for Advanced Measurement and Characterization, National Institute for Materials Science, 1-1 Namiki, Tsukuba, Ibaraki305-0044, Japan
| | - Tatsuya Tsukuda
- Department of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo113-0033, Japan
- Elements Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University, Katsura, Kyoto615-8520, Japan
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5
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Intermolecular interaction study of Ag-amino acid biomolecular complex using vibrational spectroscopic techniques and density functional theory method. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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6
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Nhat PV, Si NT, Kiselev VG, Fielicke A, Pham HT, Nguyen MT. Unexpected structures of the Au 17 gold cluster: the stars are shining. Chem Commun (Camb) 2022; 58:5785-5788. [PMID: 35451431 DOI: 10.1039/d2cc00891b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The Au17 gold cluster was experimentally produced in the gas phase and characterized by its vibrational spectrum recorded using far-IR multiple photon dissociation (FIR-MPD) of Au17Kr. DFT and coupled-cluster theory PNO-LCCSD(T)-F12 computations reveal that, at odds with most previous reports, Au17 prefers two star-like forms derived from a pentaprism added by two extra Au atoms on both top and bottom surfaces of the pentaprism, along with five other Au atoms each attached on a lateral face. A good agreement between calculated and FIR-MPD spectra indicates a predominant presence of these star-like isomers. Stabilization of a star form arises from strong orbital interactions of an Au12 core with a five-Au-atom string.
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Affiliation(s)
- Pham Vu Nhat
- Department of Chemistry, Can Tho University, Can Tho, Vietnam
| | - Nguyen Thanh Si
- Department of Chemistry, Can Tho University, Can Tho, Vietnam
| | - Vitaly G Kiselev
- Novosibirsk State University, 1 Pirogova Str., 630090 Novosibirsk, Russia.,Institute of Chemical Kinetics and Combustion SB RAS, 3 Institutskaya Str., 630090 Novosibirsk, Russia
| | - André Fielicke
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
| | - Hung Tan Pham
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, 3001 Leuven, Belgium
| | - Minh Tho Nguyen
- Institute for Computational Science and Technology (ICST), Ho Chi Minh City, Vietnam.
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7
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Takei D, Yatabe T, Yabe T, Miyazaki R, Hasegawa JY, Yamaguchi K. C-H Bond Activation Mechanism by a Pd(II)-(μ-O)-Au(0) Structure Unique to Heterogeneous Catalysts. JACS AU 2022; 2:394-406. [PMID: 35252989 PMCID: PMC8889553 DOI: 10.1021/jacsau.1c00433] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Indexed: 06/14/2023]
Abstract
We focused on identifying a catalytic active site structure at the atomic level and elucidating the mechanism at the elementary reaction level of liquid-phase organic reactions with a heterogeneous catalyst. In this study, we experimentally and computationally investigated efficient C-H bond activation for the selective aerobic α,β-dehydrogenation of saturated ketones by using a Pd-Au bimetallic nanoparticle catalyst supported on CeO2 (Pd/Au/CeO2) as a case study. Detailed characterization of the catalyst with various observation methods revealed that bimetallic nanoparticles formed on the CeO2 support with an average size of about 2.5 nm and comprised a Au nanoparticle core and PdO nanospecies dispersed on the core. The formation mechanism of the nanoparticles was clarified through using several CeO2-supported controlled catalysts. Activity tests and detailed characterizations demonstrated that the dehydrogenation activity increased with the coordination numbers of Pd-O species in the presence of Au(0) species. Such experimental evidence suggests that a Pd(II)-(μ-O)-Au(0) structure is the true active site for this reaction. Based on density functional theory calculations using a suitable Pd1O2Au12 cluster model with the Pd(II)-(μ-O)-Au(0) structure, we propose a C-H bond activation mechanism via concerted catalysis in which the Pd atom acts as a Lewis acid and the adjacent μ-oxo species acts as a Brønsted base simultaneously. The calculated results reproduced the experimental results for the selective formation of 2-cyclohexen-1-one from cyclohexanone without forming phenol, the regioselectivity of the reaction, the turnover-limiting step, and the activation energy.
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Affiliation(s)
- Daisuke Takei
- Department
of Applied Chemistry, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Takafumi Yatabe
- Department
of Applied Chemistry, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Tomohiro Yabe
- Department
of Applied Chemistry, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Ray Miyazaki
- Institute
for Catalysis, Hokkaido University, N21 W10 Kita-ku, Sapporo, Hokkaido 001-0021, Japan
| | - Jun-ya Hasegawa
- Institute
for Catalysis, Hokkaido University, N21 W10 Kita-ku, Sapporo, Hokkaido 001-0021, Japan
| | - Kazuya Yamaguchi
- Department
of Applied Chemistry, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
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8
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Tho NH, Bui TQ, Si NT, Nhat PV, Nhung NTA. Structural characteristics and chemical reactivity of gold-based clusters Aun (n = 16, 17) toward lone pairs. J Mol Model 2022; 28:54. [DOI: 10.1007/s00894-022-05044-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Accepted: 01/25/2022] [Indexed: 11/22/2022]
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9
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Nhat PV, Si NT, Hang NTN, Nguyen MT. The lowest-energy structure of the gold cluster Au 10: planar vs. nonplanar? Phys Chem Chem Phys 2021; 24:42-47. [PMID: 34905595 DOI: 10.1039/d1cp04440k] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The onset of the transition from 2D to 3D structures in pure gold clusters remains a matter of continuing debate. In this theoretical study we revisit several planar and non-planar structural motifs of the size Au10 with the aim to clarify this issue. Computations using a long-range corrected exchange-correlation functional LC-BLYP, coupled-cluster theories CCSD(T) and PNO-LCCSD(T)-F12 reveal that, at variance with previous reports on the preference of a planar elongated hexagon, both planar and nonplanar isomers of the neutral Au10 are energetically degenerated up to 300 K. Its 3D equilibrium geometry is a core-shell structure which can be built up from a trigonal prism by capping four extra Au atoms outside. A comparison to the available experimental vibrational spectra allows us to argue that both lowest-lying 2D and 3D isomers of Au10 likely coexist in the molecular beam during measurement of its FIR spectra. This result also suggests that the 2D-3D transition of neutral gold clusters occurs at the size Au10.
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Affiliation(s)
- Pham Vu Nhat
- Department of Chemistry, Can Tho University, Can Tho 900000, Vietnam.
| | - Nguyen Thanh Si
- Department of Chemistry, Can Tho University, Can Tho 900000, Vietnam.
| | - Nguyen Thi Nhat Hang
- Faculty of Food Science and Technology, Thu Dau Mot University, Thu Dau Mot, Vietnam
| | - Minh Tho Nguyen
- Institute for Computational Science and Technology (ICST), Quang Trung Software City, Ho Chi Minh City, Vietnam.
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10
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Nhat PV, Si NT, Kiselev VG, Nguyen MT. Another look at energetically quasi-degenerate structures of the gold cluster Au 27 q with q = 1, 0, -1. J Comput Chem 2021; 42:2145-2153. [PMID: 34435682 DOI: 10.1002/jcc.26744] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Revised: 08/09/2021] [Accepted: 08/11/2021] [Indexed: 11/06/2022]
Abstract
Quantum chemical computations were used to reinvestigate the geometries, spectroscopic, and energetic properties of the gold clusters Au27 q in three charge states (q = 1, 0, -1). Density functional theory (DFT) and the domain-based local pair natural orbital modification of the coupled-cluster theory DLPNO-CCSD(T) calculations revealed that, at variance with earlier reports in the literature, while the anion Au27 - tends to exist in a tube-like form, both the lowest-energy Au27 and Au27 + isomers exhibit a pyramidal shape. However, several isomers were found to lie very close in energy, thus rendering a structural transition and their coexistence easy to occur. More specifically, the equilibrium geometry of the neutral Au27 is a core-shell pyramid-like structure with one gold atom located inside. We also identified a novel ground state for the anion Au27 - and located for the first time the global minimum of the cation Au27 + . The vertical detachment energies of the neutral and anionic states were also computed and used to assign the available experimental photoelectron spectra. Although many Au27 isomers were predicted to be energetically quasi-degenerate, the corresponding distinctive vibrational signatures can be used as fingerprints for the identification of cluster geometrical features.
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Affiliation(s)
- Pham Vu Nhat
- Department of Chemistry, Can Tho University, Can Tho, Vietnam
| | - Nguyen Thanh Si
- Department of Chemistry, Can Tho University, Can Tho, Vietnam
| | - Vitaly G Kiselev
- Novosibirsk State University, Novosibirsk, Russia.,Institute of Chemical Kinetics and Combustion SB RAS, Novosibirsk, Russia
| | - Minh Tho Nguyen
- Institute for Computational Science and Technology (ICST), Ho Chi Minh City, Vietnam
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11
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Ferrari P, Hansen K. Computing gold cluster energies with density functional theory: the importance of correlation. Phys Chem Chem Phys 2021; 23:14830-14835. [PMID: 34212962 DOI: 10.1039/d1cp02084f] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Energies calculated with density functional theory depend critically on the choice of the exchange-correlation functional. In this work, we use measured dissociation energies of Aun+ (n = 5-17) clusters as benchmark data to test two very different functionals for calculating total energies in these clusters; the simpler (and fast) PBE and the evolved (and expensive) B2PLYP double-hybrid functionals. PBE consistently gives poor agreement with the experimental results. In contrast, the B2PLYP functional, which implicitly includes electron correlation by performing a perturbative second-order correction, significantly improves the agreement of the calculations, at the cost of much more demanding computations. The better performance of the double-hybrid functional is ascribed to the longer range of the interatomic potential.
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Affiliation(s)
- Piero Ferrari
- Department of Physics and Astronomy, Quantum Solid State Physics, KU Leuven, 3001 Leuven, Belgium.
| | - Klavs Hansen
- Center for Joint Quantum Studies and Department of Physics, School of Science, Tianjin University, 92 Weijin Road, Tianjin 300072, China.
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12
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Hasegawa S, Takano S, Harano K, Tsukuda T. New Magic Au 24 Cluster Stabilized by PVP: Selective Formation, Atomic Structure, and Oxidation Catalysis. JACS AU 2021; 1:660-668. [PMID: 34467325 PMCID: PMC8395683 DOI: 10.1021/jacsau.1c00102] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Indexed: 06/13/2023]
Abstract
An unprecedented magic number cluster, Au24Cl x (x = 0-3), was selectively synthesized by the kinetically controlled reduction of the Au precursor ions in a microfluidic mixer in the presence of a large excess of poly(N-vinyl-2-pyrrolidone) (PVP). The atomic structure of the PVP-stabilized Au24Cl x was investigated by means of aberration-corrected transmission electron microscopy (ACTEM) and density functional theory (DFT) calculations. ACTEM video imaging revealed that the Au24Cl x clusters were stable against dissociation but fluctuated during the observation period. Some of the high-resolution ACTEM snapshots were explained by DFT-optimized isomeric structures in which all the constituent atoms were located on the surface. This observation suggests that the featureless optical spectrum of Au24Cl x is associated with the coexistence of distinctive isomers. X-ray photoelectron spectroscopy and Fourier-transform infrared spectroscopy of CO adsorbates revealed the electron-rich nature of Au24Cl x clusters due to the interaction with PVP. The Au24Cl x :PVP clusters catalyzed the aerobic oxidation of benzyl alcohol derivatives without degradation. Hammett analysis and the kinetic isotope effect indicated that the hydride elimination by Au24Cl x was the rate-limiting step with an apparent activation energy of 56 ± 3 kJ/mol, whereas the oxygen pressure dependence of the reaction kinetics suggested the involvement of hydrogen abstraction by coadsorbed O2 as a faster process.
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Affiliation(s)
- Shingo Hasegawa
- Department
of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Shinjiro Takano
- Department
of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Koji Harano
- Department
of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Tatsuya Tsukuda
- Department
of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
- Elements
Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University, Katsura, Kyoto 615-8520, Japan
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13
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Karimadom BR, Kornweitz H. Mechanism of Producing Metallic Nanoparticles, with an Emphasis on Silver and Gold Nanoparticles, Using Bottom-Up Methods. Molecules 2021; 26:2968. [PMID: 34067624 PMCID: PMC8156005 DOI: 10.3390/molecules26102968] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Revised: 05/09/2021] [Accepted: 05/14/2021] [Indexed: 11/16/2022] Open
Abstract
Bottom-up nanoparticle (NP) formation is assumed to begin with the reduction of the precursor metallic ions to form zero-valent atoms. Studies in which this assumption was made are reviewed. The standard reduction potential for the formation of aqueous metallic atoms-E0(Mn+aq/M0aq)-is significantly lower than the usual standard reduction potential for reducing metallic ions Mn+ in aqueous solution to a metal in solid state. E0(Mn+aq/M0solid). E0(Mn+aq/M0aq) values are negative for many typical metals, including Ag and Au, for which E0(Mn+aq/M0solid) is positive. Therefore, many common moderate reduction agents that do not have significantly high negative reduction standard potentials (e.g., hydrogen, carbon monoxide, citrate, hydroxylamine, formaldehyde, ascorbate, squartic acid, and BH4-), and cannot reduce the metallic cations to zero-valent atoms, indicating that the mechanism of NP production should be reconsidered. Both AgNP and AuNP formations were found to be multi-step processes that begin with the formation of clusters constructed from a skeleton of M+-M+ (M = Ag or Au) bonds that is followed by the reduction of a cation M+ in the cluster to M0, to form Mn0 via the formation of NPs. The plausibility of M+-M+ formation is reviewed. Studies that suggest a revised mechanism for the formation of AgNPs and AuNPs are also reviewed.
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Affiliation(s)
| | - Haya Kornweitz
- Chemical Sciences Department, Ariel University, Ariel 4077625, Israel;
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14
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Liu Q, Fan P, Hu Y, Wang F, Cheng L. Superatomic and adsorption properties of Ni atom doped Au clusters. Phys Chem Chem Phys 2021; 23:10946-10952. [PMID: 33913457 DOI: 10.1039/d1cp00589h] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Due to their strong relativistic effects, Au clusters exhibit many unusual geometric structures. Among them, Au7-, Au8 and Au9+ have 18 valence electrons satisfying the magic numbers in the jellium model, respectively, but these three non-spherical clusters are not superatoms. In general, a single dopant atom can drastically change the structural and electronic properties of Au clusters. Here, we searched structures of NiAu7-, NiAu8 and NiAu9+ clusters using the genetic algorithm program (GA) combined with density functional theory (DFT). It was found that the alloy clusters are all 3D spherical structures. The molecular orbitals and density of states analysis indicate that they have completely filled superatomic shells (1S21P6), in which the electronic structure of the Ni atom is d10. Then, the electrostatic potential surfaces of the alloy clusters are analyzed, and the calculated results show that the NiAu8 superatom has remarkable σ-holes with positive potential regions. Moreover, these electron-deficient regions can be considered as interaction sites with some electron donors. After a Lewis base CO gas molecule is adsorbed on the Au-based superatom, we found that the C-O bond distance becomes slightly elongated and its stretching frequency presents a significant red-shift. This is due to the fact that 5d electrons of the Au atom of the NiAu8 transfer towards the anti-bond π orbitals of the CO molecule. Hence, this is an effective strategy for finding new types of superatoms and potential catalysts for covalent bond activation.
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Affiliation(s)
- Qiman Liu
- School of Chemical and Materials Engineering, Huainan Normal University, Huainan 232038, P. R. China. and Anhui Province Key Laboratory of Low Temperature Co-fired Materials, Huainan, 232038, P. R. China
| | - Pei Fan
- School of Chemical and Materials Engineering, Huainan Normal University, Huainan 232038, P. R. China.
| | - Yunhu Hu
- School of Chemical and Materials Engineering, Huainan Normal University, Huainan 232038, P. R. China.
| | - Fengwu Wang
- School of Chemical and Materials Engineering, Huainan Normal University, Huainan 232038, P. R. China.
| | - Longjiu Cheng
- Department of Chemistry, Anhui Province Key Laboratory of Chemistry for Inorganic/Organic Hybrid Functionalized Materials, Anhui University, Hefei, 230601, P. R. China.
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15
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Vu Nhat P, Si NT, Tien NT, Nguyen MT. Theoretical Study of the Binding of the Thiol-Containing Cysteine Amino Acid to the Silver Surface Using a Cluster Model. J Phys Chem A 2021; 125:3244-3256. [PMID: 33861072 DOI: 10.1021/acs.jpca.0c11182] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Computational approaches within the framework of density functional theory (DFT) were employed to elucidate the binding mechanism of the cysteine amino acid on silver nanoparticles using several small silver clusters Agn with n = 2-10 as surface models. The long-range corrected LC-BLYP functional and correlation consistent basis sets cc-pVTZ-PP and cc-pVTZ were used to determine the structural features, energetics, and spectroscopic and electronic properties of the resulting complexes. In vacuum and highly acidic conditions, cysteine molecules prefer to adsorb on silver clusters via their amine group. In aqueous solution, the thiolate head turns out to be the most energetically favorable binding site. The cysteine affinity of silver clusters is greatly altered in different conditions, i.e., acidic solution < vacuum < aqueous solution, and is strongly dependent on the cluster size. As compared to free clusters, the frontier orbital energy gap of the ones capped by cysteine is significantly improved, which corresponds to stronger stability, especially in aqueous solution. The analysis of frontier orbitals also reveals that both forward and backward electron donations exhibit comparable contributions to the enhancement of stabilizing interactions. As for an application, a chemical enhancement mechanism of the surface-enhanced Raman scattering (SERS) procedure of cysteine by silver clusters was also analyzed.
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Affiliation(s)
- Pham Vu Nhat
- Department of Chemistry, Can Tho University, Can Tho 900000, Vietnam
| | - Nguyen Thanh Si
- Computational Chemistry Research Group, Ton Duc Thang University, Ho Chi Minh City 700000, Vietnam.,Faculty of Applied Sciences, Ton Duc Thang University, Ho Chi Minh City 700000, Vietnam
| | | | - Minh Tho Nguyen
- Computational Chemistry Research Group, Ton Duc Thang University, Ho Chi Minh City 700000, Vietnam.,Faculty of Applied Sciences, Ton Duc Thang University, Ho Chi Minh City 700000, Vietnam
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Xu S, Zhang Y, Wei Y, Tian G. Ground and excited state geometrical and optical properties of Au (n = 2–13) nanoclusters: A first-principles study. COMPUT THEOR CHEM 2020. [DOI: 10.1016/j.comptc.2020.113007] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Joshi K, Krishnamurty S, Dar MA. Surface functionalization: an efficient alternative for promoting the catalytic activity of closed shell gold clusters. Phys Chem Chem Phys 2020; 22:23351-23359. [PMID: 33043944 DOI: 10.1039/d0cp01918f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Surface functionalization through adsorption of ligands or non-metal atoms is considered to be an interesting and viable approach for tuning the physicochemical properties of gold clusters. Highly stable and magic numbered electronic configurations of thiolate protected gold clusters such as Au25(SR)18, Au38(SR)24etc. with intriguing properties are the direct manifestation of the rich chemistry of the Au-S interface. The present investigation discerns the CO oxidation activity of structurally well characterized sulphur functionalized gold cluster anions AumS4-, m = 6-10. To establish an in-depth understanding, their activities are analyzed and compared with the corresponding pristine gold clusters. It is seen that sulphur functionalization irrespective of a closed or open shell nature leads to a significant decrease in the O2 adsorption energies on the anionic gold clusters. However, in sharp contrast to O2 adsorption, surface functionalization gives rise to multifarious catalytic behavior in AumS4- clusters with catalytic activity ranging from low (for Au6S4-, Au8S4-) to moderate (for Au9S4-, Au10S4-) to very high (for Au7S4-) for CO oxidation. It is interesting to note that the closed shell Au7S4- and Au9S4- clusters with poor O2 adsorption show remarkably low activation barriers and enhanced catalytic activity as compared to the open shell AumS4- clusters with an odd number of electrons. In particular, in the case of Au7S4- the lowest activation energy barriers of 0.01 and 0.21 eV are obtained, making the CO oxidation reaction facile. Moreover, ab initio molecular dynamics are performed to confirm the enhanced catalytic behaviour of Au7S4- and its dynamical stability during the desorption of CO2 molecule from its surface.
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Affiliation(s)
- Krati Joshi
- Functional Materials Division, CSIR-Central Electrochemical Research Institute, Karaikudi 630 006, India
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Nhat PV, Si NT, Tram NTT, Duong LV, Nguyen MT. Elucidating the binding mechanism of thione-containing mercaptopurine and thioguanine drugs to small gold clusters. J Comput Chem 2020; 41:1748-1758. [PMID: 32357385 DOI: 10.1002/jcc.26216] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2020] [Revised: 04/10/2020] [Accepted: 04/13/2020] [Indexed: 12/21/2022]
Abstract
Density functional theory methods were employed to clarify the adsorption/desorption behaviors of the thione-containing mercaptopurine and thioguanine drugs on the gold surface using both small Au6 and Au8 clusters as model reactants. Structural features, thermodynamic parameters, bonding characteristics, and electronic properties of the resulting complexes were investigated using the Perdew-Burke-Ernzerhof (PBE) and LC-BLYP functionals along with correlation-consistent basis sets, namely cc-pVDZ-PP for gold and cc-pVTZ for non-metals. Computed results show that the drug molecules tend to anchor on the gold cluster at the S atom with binding energies around -34 to -40 kcal/mol (in vacuum) and - 28 to -32 kcal/mol (in aqueous solution). As compared to Au8 , Au6 undergoes a shorter recovery time and a larger change of energy gap that could be converted to an electrical signal for selective detection of the drugs. Furthermore, interactions between the drugs and gold clusters are reversible processes and a drug release mechanism was also proposed. Accordingly, the drugs are able to separate from the gold surface due to either a slight change of pH in tumor cells or the presence of cysteine residues in protein matrices.
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Affiliation(s)
- Pham Vu Nhat
- Department of Chemistry, Can Tho University, Can Tho, Vietnam
| | - Nguyen Thanh Si
- Computational Chemistry Research Group, Ton Duc Thang University, Ho Chi Minh City, Vietnam.,Department of Chemistry, Can Tho University, Can Tho, Vietnam
| | - Nguyen Thi Thu Tram
- Department of Chemistry, Can Tho University of Medicine and Pharmacy, Can Tho, Vietnam
| | - Long Van Duong
- Laboratory of Molecular Science and Nanomaterials, Institute for Computational Science and Technology, Ho Chi Minh City, Vietnam
| | - Minh Tho Nguyen
- Computational Chemistry Research Group, Ton Duc Thang University, Ho Chi Minh City, Vietnam.,Faculty of Applied Sciences, Ton Duc Thang University, Ho Chi Minh City, Vietnam
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