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Tóth Ugyonka H, Hantal G, Szilágyi I, Idrissi A, Jorge M, Jedlovszky P. Single Particle Dynamics at the Free Surface of Imidazolium-Based Ionic Liquids. J Phys Chem B 2024. [PMID: 39719079 DOI: 10.1021/acs.jpcb.4c07311] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2024]
Abstract
In this work, we carry out a systematic computer simulation investigation of the single particle dynamics at the free surface of imidazolium-based room temperature ionic liquids by applying intrinsic surface analysis. Besides assessing the effect of the potential model and temperature, we focus in particular on the effect of changing the anion type, and, hence, their shape and size. Further, we also address the role of the length of the cation alkyl chains, known to protrude into the vapor phase, on the surface dynamics of the ions. We observe that the surface dynamics of ionic liquids, being dominated by strong electrostatic interactions, is about 2 orders of magnitude slower than that for common molecular liquids. Furthermore, the free energy driving force for exposing apolar chains to the vapor phase "pins" the cations at the surface layer for much longer than anions, allowing them to perform noticeable lateral diffusion at the liquid surface during their stay there. On the other hand, anions, accumulated in the second layer beneath the liquid surface, stay considerably longer here than in the surface layer. The ratio of the mean surface residence time of the cations and anions depends on the relative size of the two ions: larger size asymmetry typically corresponds to larger values of this ratio. We also find, in a clear contrast with the bulk liquid phase behavior, that anions typically diffuse faster at the liquid surface than cations. Finally, our results show that the surface dynamics of the ions is largely determined by the apolar layer of the cation alkyl chains at the liquid surface, as in the absence of such a layer, cations and anions are found to behave similarly with respect to their single particle dynamics.
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Affiliation(s)
- Helga Tóth Ugyonka
- Department of Chemistry, Eszterházy Károly Catholic University, Leányka utca 12, H-3300 Eger, Hungary
| | - György Hantal
- PULS Group, Department of Physics, Friedrich-Alexander-Universität Erlangen-Nürnberg, Cauerstr. 3, D-91058 Erlangen, Germany
| | - István Szilágyi
- MTA-SZTE Lendület Biocolloids Research Group, Department of Physical Chemistry and Materials Science, Interdisciplinary Excellence Center, University of Szeged, H-6720 Szeged, Hungary
| | - Abdenacer Idrissi
- University of Lille, CNRS UMR 8516 -LASIRe - Laboratoire Avancé de Spectroscopie pour les Interactions la Réactivité et l'environnement, 59000 Lille, France
| | - Miguel Jorge
- Department of Chemical and Process Engineering, University of Strathclyde, 75 Montrose Street, Glasgow G1 1XJ, United Kingdom
| | - Pál Jedlovszky
- Department of Chemistry, Eszterházy Károly Catholic University, Leányka utca 12, H-3300 Eger, Hungary
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Jorge M. Theoretically grounded approaches to account for polarization effects in fixed-charge force fields. J Chem Phys 2024; 161:180901. [PMID: 39513441 DOI: 10.1063/5.0236899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2024] [Accepted: 10/21/2024] [Indexed: 11/15/2024] Open
Abstract
Non-polarizable, or fixed-charge, force fields are the workhorses of most molecular simulation studies. They attempt to describe the potential energy surface (PES) of the system by including polarization effects in an implicit way. This has historically been done in a rather empirical and ad hoc manner. Recent theoretical treatments of polarization, however, offer promise for getting the most out of fixed-charge force fields by judicious choice of parameters (most significantly the net charge or dipole moment of the model) and application of post facto polarization corrections. This Perspective describes these polarization theories, namely the "halfway-charge" theory and the molecular dynamics in electronic continuum theory, and shows that they lead to qualitatively (and often, quantitatively) similar predictions. Moreover, they can be reconciled into a unified approach to construct a force field development workflow that can yield non-polarizable models with charge/dipole values that provide an optimal description of the PES. Several applications of this approach are reviewed, and avenues for future research are proposed.
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Affiliation(s)
- Miguel Jorge
- Department of Chemical and Process Engineering, University of Strathclyde, 75 Montrose Street, Glasgow G1 1XJ, United Kingdom
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Phan LX, Owji AP, Yang T, Crain J, Sansom MS, Tucker SJ. Electronic Polarizability Tunes the Function of the Human Bestrophin 1 Cl - Channel. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.11.14.567055. [PMID: 38014257 PMCID: PMC10680768 DOI: 10.1101/2023.11.14.567055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2023]
Abstract
Mechanisms of anion permeation within ion channels and nanopores remain poorly understood. Recent cryo-electron microscopy structures of the human bestrophin 1 Cl- channel (hBest1) provide an opportunity to evaluate ion interactions predicted by molecular dynamics (MD) simulations against experimental observations. Here, we implement the fully polarizable forcefield AMOEBA in MD simulations on different conformations of hBest1. This forcefield models multipole moments up to the quadrupole; therefore, it captures induced dipole and anion-π interactions. We show that key biophysical properties of the channel can only be simulated when electronic polarization is included in the molecular models and that Cl- permeation through the neck of the pore is achieved through hydrophobic solvation concomitant with partial ion dehydration. Furthermore, we demonstrate how such polarizable simulations can help determine the identity of ion-like densities within high-resolution cryo-EM structures and that neglecting polarization places Cl- at positions that do not correspond with their experimentally resolved location. Overall, our results demonstrate the importance of including electronic polarization in realistic and physically accurate models of biological systems, especially channels and pores that selectively permeate anions.
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Affiliation(s)
- Linda X. Phan
- Clarendon Laboratory, Department of Physics, University of Oxford, Oxford, OX1 3PU, UK
- Department of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK
| | - Aaron P. Owji
- Department of Opthalmology, Columbia University, New York, NY, USA
- Department of Pharmacology, Columbia University, New York, NY, USA
- Simons Electron Microscopy Center, New York Structural Biology Center, New York, NY 10027, USA
| | - Tingting Yang
- Department of Opthalmology, Columbia University, New York, NY, USA
| | - Jason Crain
- Department of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK
- IBM Research Europe, Hartree Centre, Daresbury, WA4 4AD, UK
| | - Mark S.P. Sansom
- Department of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK
| | - Stephen J. Tucker
- Clarendon Laboratory, Department of Physics, University of Oxford, Oxford, OX1 3PU, UK
- Kavli Institute for Nanoscience Discovery, University of Oxford, OX1 3QU, UK
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McFegan L, Juhász Á, Márton P, Hórvölgyi Z, Jedlovszky-Hajdu A, Hantal G, Jedlovszky P. Surface Affinity of Tetramethylammonium Iodide in Aqueous Solutions: A Combined Experimental and Computer Simulation Study. J Phys Chem B 2023. [PMID: 37276239 DOI: 10.1021/acs.jpcb.3c01370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The surface affinity of tetramethylammonium iodide (TMAI) in aqueous solutions is investigated by surface tension measurements and molecular dynamics computer simulations. Experiments, performed in the entire composition range of solubility using the pendant drop method with two different setups, clearly reveal that TMAI is a weakly capillary active salt. Computer simulations performed with the AMBER force field reproduce the experimental data very well, while two other major force fields (i.e., CHARMM and OPLS) can still reproduce the experimental trend qualitatively; however, even qualitative reproduction of the experimental trend requires scaling down the ion charges according to the Leontyev-Stuchebrukhov correction. On the other hand, the GROMOS force field fails in reproducing the experimentally confirmed capillary activity of TMAI. Molecular dynamics simulation results show that, among the two ions, iodide has a clearly larger surface affinity than tetramethylammonium (TMA+). Further, the adsorption of the I- anions is strictly limited to the first molecular layer beneath the liquid-vapor interface, which is followed by several layers of their depletion. On the other hand, the net negative charge of the surface layer, caused by the excess amount of I- with respect to TMA+, is compensated by a diffuse layer of adsorbed TMA+ cations, extending to or beyond the fourth molecular layer beneath the liquid surface.
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Affiliation(s)
- Louisa McFegan
- Faculty of Chemical Technology and Biotechnology, Budapest University of Technology and Economics, Szt. Gellért tér 4, H-1111 Budapest, Hungary
| | | | - Péter Márton
- Department of Physical Chemistry and Materials Science, Budapest University of Technology and Economics, Budafoki út 8, H-1111 Budapest, Hungary
| | - Zoltán Hórvölgyi
- Department of Physical Chemistry and Materials Science, Budapest University of Technology and Economics, Budafoki út 8, H-1111 Budapest, Hungary
| | | | - György Hantal
- Institute of Physics and Materials Science, University of Natural Resources and Life Sciences, Peter Jordan Straße 82, A-1190 Vienna, Austria
| | - Pál Jedlovszky
- Department of Chemistry, Eszterházy Károly Catholic University, Leányka utca 6, H-3300 Eger, Hungary
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Panagiotopoulos AZ, Yue S. Dynamics of Aqueous Electrolyte Solutions: Challenges for Simulations. J Phys Chem B 2023; 127:430-437. [PMID: 36607836 DOI: 10.1021/acs.jpcb.2c07477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
This Perspective article focuses on recent simulation work on the dynamics of aqueous electrolytes. It is well-established that full-charge, nonpolarizable models for water and ions generally predict solution dynamics that are too slow in comparison to experiments. Models with reduced (scaled) charges do better for solution diffusivities and viscosities but encounter issues describing other dynamic phenomena such as nucleation rates of crystals from solution. Polarizable models show promise, especially when appropriately parametrized, but may still miss important physical effects such as charge transfer. First-principles calculations are starting to emerge for these properties that are in principle able to capture polarization, charge transfer, and chemical transformations in solution. While direct ab initio simulations are still too slow for simulations of large systems over long time scales, machine-learning models trained on appropriate first-principles data show significant promise for accurate and transferable modeling of electrolyte solution dynamics.
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Affiliation(s)
| | - Shuwen Yue
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
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Lbadaoui-Darvas M, Idrissi A, Jedlovszky P. Computer Simulation of the Surface of Aqueous Ionic and Surfactant Solutions. J Phys Chem B 2022; 126:751-765. [PMID: 34904437 PMCID: PMC9161821 DOI: 10.1021/acs.jpcb.1c08553] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
The surface of aqueous solutions of simple salts was not the main focus of scientific attention for a long while. Considerable interest in studying such systems has only emerged in the past two decades, following the pioneering finding that large halide ions, such as I-, exhibit considerable surface affinity. Since then, a number of issues have been clarified; however, there are still several unresolved points (e.g., the effect of various salts on lateral water diffusion at the surface) in this respect. Computer simulation studies of the field have largely benefited from the appearance of intrinsic surface analysis methods, by which the particles staying right at the boundary of the two phases can be unambiguously identified. Considering complex ions instead of simple ones opens a number of interesting questions, both from the theoretical point of view and from that of the applications. Besides reviewing the state-of-the-art of intrinsic surface analysis methods as well as the most important advances and open questions concerning the surface of simple ionic solutions, we focus on two such systems in this Perspective, namely, the surface of aqueous mixtures of room temperature ionic liquids and that of ionic surfactants. In the case of the former systems, for which computer simulation studies have still scarcely been reported, we summarize the theoretical advances that could trigger such investigations, which might well be of importance also from the point of view of industrial applications. Computer simulation methods are, on the other hand, widely used in studies of the surface of surfactant solutions. Here we review the most important theoretical advances and issues to be addressed and discuss two areas of applications, namely, the inclusion of information gathered from such simulations in large scale atmospheric models and the better understanding of the airborne transmission of viruses, such as SARS-CoV-2.
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Affiliation(s)
- Mária Lbadaoui-Darvas
- Laboratory
of Atmospheric Processes and their Impacts, EPFL, CH-1015 Lausanne, Switzerland
| | - Abdenacer Idrissi
- CNRS,
UMR 8516 -LASIRe - Laboratoire Avancé de Spectroscopie pour
les Interactions la Réactivité et l’environnement, University of Lille, F-5900 Lille, France
| | - Pál Jedlovszky
- Department
of Chemistry, Eszterházy Károly
University, Leányka utca 6, H-3300 Eger, Hungary,
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