Analysis of PDA Dose Curves for the Extraction of Antimicrobial Peptide Properties

A review on the screening methods for the discovery of natural antimicrobial peptides

Natural antimicrobial peptides (AMPs) are promising candidates for the development of a new generation of antimicrobials to combat antibiotic-resistant pathogens. They have found extensive applications in the fields of medicine, food, and agriculture. However, efficiently screening AMPs from natural sources poses several challenges, including low efficiency and high antibiotic resistance. This review focuses on the action mechanisms of AMPs, both through membrane and non-membrane routes. We thoroughly examine various highly efficient AMP screening methods, including whole-bacterial adsorption binding, cell membrane chromatography (CMC), phospholipid membrane chromatography binding, membrane-mediated capillary electrophoresis (CE), colorimetric assays, thin layer chromatography (TLC), fluorescence-based screening, genetic sequencing-based analysis, computational mining of AMP databases, and virtual screening methods. Additionally, we discuss potential developmental applications for enhancing the efficiency of AMP discovery. This review provides a comprehensive framework for identifying AMPs within complex natural product systems.

Mechanochromic Chameleon Packaging Based on Polydiacetylene

We demonstrated a mechanochromic chameleon packaging that quantitatively visualizes damage based on the polydiacetylene blue-to-red color transition. The applied pressures on the damage can be conveniently read by taking a photograph via a homemade mobile app called the "Pressure Analysis App". The key aspects of the development were 1) the adjustment of the sensitivity by adding guest molecules into the PDA matrix, 2) quantitative calibration, and 3) the accurate reading of the pressure from RGB images based on the calibration. The force sensitivity of polydiacetylene on cellulose was characterized in the range of 30-100 nN (2.59-8.86 MPa) at the nanoscale by dual friction force/fluorescence microscopy, and in the range of 0.7-2.2 N (0.11-0.35 MPa) at the macroscopic scale by a friction tester. The scanning speed was found to be one of the key parameters, where the force sensitivity above 50 mm/s was 6.45 times larger than that below 10 mm/s. The developed mechanochromic packaging system can be used for transporting electronics and medical tools, such as vaccine vials, food, etc., more safely and reliably in the future.

Mechanical Properties of Polydiacetylene Multilayers Studied by AFM Force Spectroscopy

The blue-to-red chromatic phase transition of polydiacetylene (PDA) is accompanied by the twist and rearrangement of its side chains, which results in shortening of the conjugation length in the backbone. However, how these morphological changes affect its mechanical properties remains elusive. In this work, force spectroscopy mapping by atomic force microscopy was employed to quantify mechanical parameters of PDA thin films such as breakthrough force and Young's modulus at the monomer, blue, and red phases during the chromatic transition. We found that the breakthrough force increased by 113% and Young's modulus decreased by 21% during the blue-to-red transition, highlighting that the subtle change in the side-chain configuration has a dramatic impact on its mechanical properties.

Dual Friction Force/Fluorescence Microscopy

Friction force microscopy (FFM) is a mode of atomic force microscopy (AFM) that quantifies both normal and horizontal forces against substrates. Recent improvement in its accuracy at nanonewton ranges and the possibility of combining AFM with fluorescence microscopy enabled the simultaneous characterization by FFM and fluorescence microscopy. This Tutorial describes the operation principle of the dual friction force/fluorescence microscopy setup and highlights its emerging applications in mechanochromic materials.

Dual Nanofriction Force Microscopy/Fluorescence Microscopy Imaging Reveals the Enhanced Force Sensitivity of Polydiacetylene by pH and NaCl

Polydiacetylene (PDA) is a popular mechanochromic material often used in biosensing. The effect of its headgroup-headgroup interactions on thermochromism such as pH or salt concentration dependency has been extensively studied before; however, their effect on mechanochromism at the nanoscale is left unstudied. In this work, nanofriction force microscopy and fluorescence microscopy were combined to study the effect of pH and ionic strength on the polydiacetylene (PDA) force sensitivity at the nanoscale. We found that the increase in pH from 5.7 to 8.2 caused an 8-fold enhancement in force sensitivity. The elevation of NaCl concentration from 10 to 200 mM also made the PDA 5 times more force-sensitive. These results suggest that the PDA force sensitivity at the nanoscale can be conveniently enhanced by "pre-stimulation" with pH or ionic strength.

Colorimetric response in polydiacetylene at the single domain level using hyperspectral microscopy

The structural variance of polydiacetylene (PDA) at the nanoscale level, even under the same fabrication conditions, is one of the origins of its poor reproducibility in chemo/biosensing. In this work, we present a spatial map of such structural distributions within a single crystal by taking advantage of the recent development of hyperspectral microscopy at visible wavelengths. Hyperspectral microscopy provides the distribution of absorption spectra at the spatial resolution of standard optical microscopy. By tracking the blue-to-red transition via this technique, we found that heat or pH stimulation leaves a unique pattern in the transition pathways.

Peptide–Polymer Conjugates: A Promising Therapeutic Solution for Drug-Resistant Bacteria

By 2050, it is estimated that 10 million people will die of drug-resistant bacterial infection caused by antibiotic abuse. Antimicrobial peptide (AMP) is widely used to prevent such circumstances, for the positively charged AMPs can kill drug-resistant bacteria by destroying negatively charged bacterial cell membrane, and has excellent antibacterial efficiency and low drug resistance. However, due to the defects in low in vivo stability, easy degradation, and certain cytotoxicity, its practical clinical application is limited. The emergence of peptide–polymer conjugates (PPC) helps AMPs overcome these shortcomings. By combining with functional polymers, the positive charge of AMPs is partially shielded, and its stability and water solubility are improved, so as to prolong the in vivo circulation time of AMPs and reduce its cytotoxicity. At the same time, the self-assembly ability of PPC enables it to assemble into different nanostructures to undertake specific antibacterial tasks. At present, PPC is mainly used in wound dressing, bone tissue repair, antibacterial coating of medical devices, nerve repair, tumor treatment, and oral health maintenance. In this study, we summarize the structure, synthesis methods, and the clinical applications of PPC, so as to present the current challenges and discuss the future prospects of antibacterial therapeutic materials.