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Czaderna-Lekka A, Tarnacka M, Wojnarowska Z, Hachuła B, Paluch M, Kamiński K. On the relationship between the Debye process in dielectric response and a dissociation-association phenomenon in phenyl alcohols. Phys Chem Chem Phys 2023; 25:14590-14597. [PMID: 37191250 DOI: 10.1039/d3cp00816a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
In this paper, we have examined a series of phenyl-substituted primary monohydroxy alcohols (phenyl alcohols, PhAs), from ethanol to hexanol by means of dielectric and Fourier transform infrared (FTIR) spectroscopies supported by the mechanical investigations. The combination of both dielectric and mechanical data allows calculation of the energy barrier, Ea, for dissociation by the Rubinstein approach developed to describe the dynamical properties of self-assembling macromolecules. It was observed that the determined activation energy remains constant, |Ea,RM| ∼ 12.9-14.2 kJ mol-1, regardless of the molecular weight of the examined material. Surprisingly, the obtained values agree very well with Ea of the dissociation process determined from the FTIR data analysed within the van't Hoff relationship, where Ea,vH ∼ 9.13-13.64 kJ mol-1. Thus, the observed agreement between Ea determined by both applied approaches clearly implies that in the case of the examined series of PhAs, the dielectric Debye-like process is governed by the association-dissociation phenomenon as proposed by the transient chain model.
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Affiliation(s)
- Anna Czaderna-Lekka
- August Chełkowski Institute of Physics, University of Silesia in Katowice, 75 Pułku Piechoty 1, 41-500 Chorzów, Poland.
| | - Magdalena Tarnacka
- August Chełkowski Institute of Physics, University of Silesia in Katowice, 75 Pułku Piechoty 1, 41-500 Chorzów, Poland.
| | - Zaneta Wojnarowska
- August Chełkowski Institute of Physics, University of Silesia in Katowice, 75 Pułku Piechoty 1, 41-500 Chorzów, Poland.
| | - Barbara Hachuła
- Institute of Chemistry, University of Silesia in Katowice, Szkolna 9, 40-006 Katowice, Poland
| | - Marian Paluch
- August Chełkowski Institute of Physics, University of Silesia in Katowice, 75 Pułku Piechoty 1, 41-500 Chorzów, Poland.
| | - Kamil Kamiński
- August Chełkowski Institute of Physics, University of Silesia in Katowice, 75 Pułku Piechoty 1, 41-500 Chorzów, Poland.
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2
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Oliveira MP, Hünenberger PH. Force fields optimized against experimental data for large compound families using CombiFF: Validation considering non-target properties and polyfunctional compounds. J Mol Graph Model 2023; 118:108312. [PMID: 36252318 DOI: 10.1016/j.jmgm.2022.108312] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2022] [Revised: 08/09/2022] [Accepted: 08/16/2022] [Indexed: 10/14/2022]
Abstract
The CombiFF scheme is a workflow for the automated calibration of force-field parameters against condensed-phase experimental data considering simultaneously entire classes of organic molecules. The main steps of this scheme are: (i) selection of a molecule family; (ii) enumeration of all isomers; (iii) query for experimental data; (iv) automatic construction of the molecular topologies; (v) iterative refinement of the force-field parameters considering the entire family. In two recent articles, CombiFF was applied to the design of GROMOS-compatible united-atom force fields for the saturated acyclic haloalkanes and for saturated acyclic compounds involving eight common chemical functional groups of oxygen and nitrogen. This calibration and the subsequent initial validation involved two limitations: (i) the experimental data considered was restricted to values for the pure-liquid density ρliq and the vaporization enthalpy ΔHvap of the compounds; (ii) beyond monofunctional compounds, the training set only involved homo-polyhaloalkanes (possibly mixing halogen types) in the first study, and homo-polyfunctional compounds of the considered oxygen or nitrogen functional groups (no mixing of different group types) in the second one. The goal of this article is to further test the accuracy of CombiFF-generated force fields by extending the validation to: (i) nine additional properties that were not used as optimization targets (pure-liquid thermodynamic, dielectric and transport properties, as well as solvation properties); (ii) hetero-polyfunctional molecules that were not included in the calibration and initial validation sets. The results for the nine additional properties show good agreement with experiment, except for the shear viscosity and the dielectric permittivity. There, larger discrepancies are observed, likely due to the united-atom representation adopted for the aliphatic groups and to the implicit treatment of electronic polarization effects. The results for the hetero-polyfunctional molecules also show reasonable agreement with experiment in terms of the monitored properties.
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Affiliation(s)
- Marina P Oliveira
- Laboratorium für Physikalische Chemie, ETH Zürich, ETH-Hönggerberg, HCI, CH-8093, Zürich, Switzerland
| | - Philippe H Hünenberger
- Laboratorium für Physikalische Chemie, ETH Zürich, ETH-Hönggerberg, HCI, CH-8093, Zürich, Switzerland.
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3
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Minecka A, Kamińska E, Jurkiewicz K, Heczko D, Hachuła B, Pisarski W, Kamiński K, Paluch M. Studies on the internal medium-range ordering and high pressure dynamics in modified ibuprofens. Phys Chem Chem Phys 2019; 22:295-305. [PMID: 31813945 DOI: 10.1039/c9cp04886c] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Broadband dielectric spectroscopy (BDS), combined with the X-ray diffraction (XRD) and Fourier transform infrared (FTIR) techniques, was used to study the dynamics of the primary (α) relaxation process and slow mode (SM), as well as structural properties and intermolecular interactions, in the methyl-, isopropyl-, hexyl-, and benzyl derivative of a well-known pharmaceutical, ibuprofen (IBU). Unexpectedly, the XRD and FTIR methods revealed the formation of medium-range ordering together with some molecular organization, which probably leads to the creation of small aggregates at the scale of several microns at lower temperatures. Moreover, high pressure dielectric experiments revealed that the SM (observed in the ambient pressure data) is not detected in the loss spectra of compressed IBU esters, which is consistent with the results reported previously for propylene carbonate and dioxolane derivatives. This finding can be interpreted as connected to either the comparable time scale of the structural dynamics and slow mode or suppression of the motions responsible for the latter process at elevated pressure. Additionally, it was found that the pressure coefficient of the glass transition temperature (dTg/dp) and activation volume (ΔV) change with molecular weight (Mw) in a non-monotonic way. It might be related to various chemical structures, conformations, and intermolecular interactions, as well as different architecture of supramolecular aggregates in the investigated compounds.
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Affiliation(s)
- Aldona Minecka
- Department of Pharmacognosy and Phytochemistry, Medical University of Silesia in Katowice, Faculty of Pharmaceutical Sciences in Sosnowiec, ul. Jagiellonska 4, 41-200 Sosnowiec, Poland.
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Romanini M, Barrio M, Macovez R, Capaccioli S, Tamarit JL. Mixtures of m-fluoroaniline with apolar aromatic molecules: Phase behaviour, suppression of H-bonded clusters, and local H-bond relaxation dynamics. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.111998] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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5
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Minecka A, Kamińska E, Heczko D, Jurkiewicz K, Wolnica K, Dulski M, Hachuła B, Pisarski W, Tarnacka M, Talik A, Kamiński K, Paluch M. Studying structural and local dynamics in model H-bonded active ingredient - Curcumin in the supercooled and glassy states at various thermodynamic conditions. Eur J Pharm Sci 2019; 135:38-50. [PMID: 31082486 DOI: 10.1016/j.ejps.2019.05.005] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2019] [Revised: 04/24/2019] [Accepted: 05/06/2019] [Indexed: 10/26/2022]
Abstract
Different experimental techniques were applied to study thermal and structural properties, strength of H-bonds, possible keto-enol tautomerism and molecular dynamics at various thermodynamic conditions in the H-bonded active substance, curcumin (CRM). Dielectric measurements revealed dynamical features of examined compound that are uncharacteristic for the associated systems. This includes enormously large pressure coefficient of the glass transition temperature and prominent drop of the fragility with compression. Simultaneously, the shape of α-process slightly broadened at elevated pressures. Infrared investigations demonstrated that this effect is related to the variation in the population of H-bonds. Moreover, we studied the changes in the structural and dynamical properties of the glasses prepared upon cooling of the melt (ordinary glass, OG) and the one obtained after compression of CRM in the liquid phase and decompression at T = 293 K (dense glass, DG). Interestingly, during the aging of the latter sample, a clear shift of the β-relaxation towards higher frequencies was noted. This unexpected result indicated that the density of DG is probably getting smaller with time. Complementary X-ray diffraction experiments confirmed this supposition. Additionally, they showed that in DG there are traces of polymorph II of CRM that has a higher density than initial crystals (polymorph I). Finally, infrared studies demonstrated that H-bond pattern in DG is slightly different with respect to OG. Furthermore, Raman investigations suggested that probably keto-enol tautomerism might be shifted towards diketo form in the glass obtained at high compression. Our investigations are very interesting in the context of better understanding of the behavior of associated systems at high compression as well as provide a better insight into dynamics of higher density glasses produced at elevated pressures.
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Affiliation(s)
- Aldona Minecka
- Department of Pharmacognosy and Phytochemistry, Medical University of Silesia in Katowice, School of Pharmacy with the Division of Laboratory Medicine in Sosnowiec, Jagiellonska 4, 41-200 Sosnowiec, Poland.
| | - Ewa Kamińska
- Department of Pharmacognosy and Phytochemistry, Medical University of Silesia in Katowice, School of Pharmacy with the Division of Laboratory Medicine in Sosnowiec, Jagiellonska 4, 41-200 Sosnowiec, Poland.
| | - Dawid Heczko
- Department of Pharmacognosy and Phytochemistry, Medical University of Silesia in Katowice, School of Pharmacy with the Division of Laboratory Medicine in Sosnowiec, Jagiellonska 4, 41-200 Sosnowiec, Poland
| | - Karolina Jurkiewicz
- Institute of Physics, University of Silesia, 75 Pulku Piechoty 1a, 41-500 Chorzów, Poland; Silesian Center for Education and Interdisciplinary Research, University of Silesia, 75 Pulku Piechoty 1a, 41-500 Chorzow, Poland
| | - Kamila Wolnica
- Institute of Physics, University of Silesia, 75 Pulku Piechoty 1a, 41-500 Chorzów, Poland; Silesian Center for Education and Interdisciplinary Research, University of Silesia, 75 Pulku Piechoty 1a, 41-500 Chorzow, Poland
| | - Mateusz Dulski
- Silesian Center for Education and Interdisciplinary Research, University of Silesia, 75 Pulku Piechoty 1a, 41-500 Chorzow, Poland; Institute of Material Science, University of Silesia, 75 Pulku Piechoty 1a, 41-500 Chorzow, Poland
| | - Barbara Hachuła
- Institute of Chemistry, University of Silesia, Szkolna 9, 40-006 Katowice, Poland
| | - Wojciech Pisarski
- Institute of Chemistry, University of Silesia, Szkolna 9, 40-006 Katowice, Poland
| | - Magdalena Tarnacka
- Institute of Physics, University of Silesia, 75 Pulku Piechoty 1a, 41-500 Chorzów, Poland; Silesian Center for Education and Interdisciplinary Research, University of Silesia, 75 Pulku Piechoty 1a, 41-500 Chorzow, Poland
| | - Agnieszka Talik
- Institute of Physics, University of Silesia, 75 Pulku Piechoty 1a, 41-500 Chorzów, Poland; Silesian Center for Education and Interdisciplinary Research, University of Silesia, 75 Pulku Piechoty 1a, 41-500 Chorzow, Poland
| | - Kamil Kamiński
- Institute of Physics, University of Silesia, 75 Pulku Piechoty 1a, 41-500 Chorzów, Poland; Silesian Center for Education and Interdisciplinary Research, University of Silesia, 75 Pulku Piechoty 1a, 41-500 Chorzow, Poland
| | - Marian Paluch
- Institute of Physics, University of Silesia, 75 Pulku Piechoty 1a, 41-500 Chorzów, Poland; Silesian Center for Education and Interdisciplinary Research, University of Silesia, 75 Pulku Piechoty 1a, 41-500 Chorzow, Poland
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6
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Honorio G, Bierwirth SP, Gainaru C, Böhmer R. Nonlinear electrical and rheological spectroscopies identify structural and supramolecular relaxations in a model peptide. SOFT MATTER 2019; 15:4334-4345. [PMID: 31073564 DOI: 10.1039/c9sm00434c] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Supercooled liquid secondary amides display an electrical absorption peak characterized by an almost Debye-like shape, indicative of a close-to-exponential polarization response. This response, believed to be supramolecular in nature, is so enormously intense that the amide's structural process, contributing only a few percent to the total relaxation strength, is hard to resolve reliably using standard dielectric spectroscopy. To overcome this issue, nonlinear dielectric spectroscopy involving field-induced structural recovery and temperature-induced physical aging, was applied near the calorimetric glass transition of a mixture of N-methylformamide and N-ethylacetamide. Without the need to rely on cumbersome deconvolution procedures, it is thus demonstrated that the supramolecular response is by a factor of 6 slower than the structural relaxation. Conversely, in linear rheological experiments only the structural relaxation could be resolved, but not the supramolecular one. However, medium-amplitude oscillatory shear experiments carried out at 160 K do reveal the supramolecular process. Hence, the combination of linear and nonlinear mechanical measurements corroborates the dielectrically uncovered spectral separation of the two processes.
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Affiliation(s)
- Gabriel Honorio
- Fakultät Physik, Technische Universität Dortmund, 44221 Dortmund, Germany
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7
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Atawa B, Correia NT, Couvrat N, Affouard F, Coquerel G, Dargent E, Saiter A. Molecular mobility of amorphous N-acetyl-α-methylbenzylamine and Debye relaxation evidenced by dielectric relaxation spectroscopy and molecular dynamics simulations. Phys Chem Chem Phys 2019; 21:702-717. [DOI: 10.1039/c8cp04880k] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
Molecular mobility of NAC-MBA molecule is described by means of DRS, FSC and MD simulations.
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8
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Büning T, Lueg J, Bolle J, Sternemann C, Gainaru C, Tolan M, Böhmer R. Connecting structurally and dynamically detected signatures of supramolecular Debye liquids. J Chem Phys 2018; 147:234501. [PMID: 29272922 DOI: 10.1063/1.4986866] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
The monohydroxy alcohol 2-ethyl-1-hexanol mixed with the halogen-substituted alkyl halides 2-ethyl-1-hexyl chloride and 2-ethyl-1-hexyl bromide was studied using synchrotron-based x-ray scattering. In the diffraction patterns, an oxygen-related prepeak appears. The concentration dependence of its intensity, shape, and position indicates that the formation of the hydrogen-bonded associates of monohydroxy alcohols is largely hindered by the halogen alkane admixture. Using dielectric spectroscopy and high-resolution rheology on the same liquid mixtures, it is shown that these structural features are correlated with the relaxation mechanisms giving rise to supramolecular low-frequency dynamics.
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Affiliation(s)
- T Büning
- Fakultät Physik/DELTA, Technische Universität Dortmund, D-44221 Dortmund, Germany
| | - J Lueg
- Fakultät Physik, Technische Universität Dortmund, D-44221 Dortmund, Germany
| | - J Bolle
- Fakultät Physik/DELTA, Technische Universität Dortmund, D-44221 Dortmund, Germany
| | - C Sternemann
- Fakultät Physik/DELTA, Technische Universität Dortmund, D-44221 Dortmund, Germany
| | - C Gainaru
- Fakultät Physik, Technische Universität Dortmund, D-44221 Dortmund, Germany
| | - M Tolan
- Fakultät Physik/DELTA, Technische Universität Dortmund, D-44221 Dortmund, Germany
| | - R Böhmer
- Fakultät Physik, Technische Universität Dortmund, D-44221 Dortmund, Germany
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9
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Rams-Baron M, Jędrzejowska A, Dulski M, Wolnica K, Geirhos K, Lunkenheimer P, Paluch M. Unusual dielectric response of 4-methyl-1,3-dioxolane derivatives. Phys Chem Chem Phys 2018; 20:28211-28222. [DOI: 10.1039/c8cp05913f] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
In this paper, we applied broadband dielectric spectroscopy (BDS) to investigate the molecular dynamics of three 4-methyl-1,3-dioxolane derivatives (MD) whose chemical structures differ in the length of non-polar alkyl side chains.
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Affiliation(s)
- Marzena Rams-Baron
- Institute of Physics
- University of Silesia
- 41-500 Chorzow
- Poland
- Silesian Center for Education and Interdisciplinary Research
| | - Agnieszka Jędrzejowska
- Institute of Physics
- University of Silesia
- 41-500 Chorzow
- Poland
- Silesian Center for Education and Interdisciplinary Research
| | - Mateusz Dulski
- Silesian Center for Education and Interdisciplinary Research
- 41-500 Chorzow
- Poland
- Institute of Material Science
- 41-500 Chorzow
| | - Kamila Wolnica
- Institute of Physics
- University of Silesia
- 41-500 Chorzow
- Poland
- Silesian Center for Education and Interdisciplinary Research
| | - Korbinian Geirhos
- Experimental Physics V
- Center for Electronic Correlations and Magnetism
- University of Augsburg
- 86159 Augsburg
- Germany
| | - Peter Lunkenheimer
- Experimental Physics V
- Center for Electronic Correlations and Magnetism
- University of Augsburg
- 86159 Augsburg
- Germany
| | - Marian Paluch
- Institute of Physics
- University of Silesia
- 41-500 Chorzow
- Poland
- Silesian Center for Education and Interdisciplinary Research
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10
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Young-Gonzales AR, Richert R. Field induced changes in the ring/chain equilibrium of hydrogen bonded structures: 5-methyl-3-heptanol. J Chem Phys 2016; 145:074503. [DOI: 10.1063/1.4961022] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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11
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Horta BAC, Merz PT, Fuchs PFJ, Dolenc J, Riniker S, Hünenberger PH. A GROMOS-Compatible Force Field for Small Organic Molecules in the Condensed Phase: The 2016H66 Parameter Set. J Chem Theory Comput 2016; 12:3825-50. [DOI: 10.1021/acs.jctc.6b00187] [Citation(s) in RCA: 88] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Bruno A. C. Horta
- Laboratory
of Physical Chemistry, ETH Zürich, CH-8093 Zürich, Switzerland
- Instituto de Química, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-909, Brazil
| | - Pascal T. Merz
- Laboratory
of Physical Chemistry, ETH Zürich, CH-8093 Zürich, Switzerland
| | - Patrick F. J. Fuchs
- Institut Jacques Monod, UMR 7592 CNRS, Université Paris-Diderot, Sorbonne Paris Cité, F-75205 Paris, France
| | - Jozica Dolenc
- Laboratory
of Physical Chemistry, ETH Zürich, CH-8093 Zürich, Switzerland
- Chemistry,
Biology and Pharmacy Information Center, ETH Zürich, CH-8093 Zürich, Switzerland
| | - Sereina Riniker
- Laboratory
of Physical Chemistry, ETH Zürich, CH-8093 Zürich, Switzerland
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12
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Xing K, Chatterjee S, Saito T, Gainaru C, Sokolov AP. Impact of Hydrogen Bonding on Dynamics of Hydroxyl-Terminated Polydimethylsiloxane. Macromolecules 2016. [DOI: 10.1021/acs.macromol.6b00262] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Kunyue Xing
- Department
of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Sabornie Chatterjee
- Department
of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Tomonori Saito
- Chemical
Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Catalin Gainaru
- Department
of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, United States
- Fakultät
für Physik, Technische Universität Dortmund, 44221 Dortmund, Germany
| | - Alexei P. Sokolov
- Department
of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, United States
- Chemical
Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
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