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Fan J, Arrazolo LK, Du J, Xu H, Fang S, Liu Y, Wu Z, Kim JH, Wu X. Effects of Ionic Interferents on Electrocatalytic Nitrate Reduction: Mechanistic Insight. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:12823-12845. [PMID: 38954631 DOI: 10.1021/acs.est.4c03949] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/04/2024]
Abstract
Nitrate, a prevalent water pollutant, poses substantial public health concerns and environmental risks. Electrochemical reduction of nitrate (eNO3RR) has emerged as an effective alternative to conventional biological treatments. While extensive lab work has focused on designing efficient electrocatalysts, implementation of eNO3RR in practical wastewater settings requires careful consideration of the effects of various constituents in real wastewater. In this critical review, we examine the interference of ionic species commonly encountered in electrocatalytic systems and universally present in wastewater, such as halogen ions, alkali metal cations, and other divalent/trivalent ions (Ca2+, Mg2+, HCO3-/CO32-, SO42-, and PO43-). Notably, we categorize and discuss the interfering mechanisms into four groups: (1) loss of active catalytic sites caused by competitive adsorption and precipitation, (2) electrostatic interactions in the electric double layer (EDL), including ion pairs and the shielding effect, (3) effects on the selectivity of N intermediates and final products (N2 or NH3), and (4) complications by the hydrogen evolution reaction (HER) and localized pH on the cathode surface. Finally, we summarize the competition among different mechanisms and propose future directions for a deeper mechanistic understanding of ionic impacts on eNO3RR.
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Affiliation(s)
- Jinling Fan
- Department of Environmental Engineering, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Engineering Research Center of Industrial Boiler & Furnace Flue Gas Pollution Control, Hangzhou, Zhejiang 310058, People's Republic of China
| | - Leslie K Arrazolo
- Department of Chemical and Environmental Engineering, Yale University, New Haven, Connecticut 06511, United States
| | - Jiaxin Du
- Department of Environmental Engineering, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Engineering Research Center of Industrial Boiler & Furnace Flue Gas Pollution Control, Hangzhou, Zhejiang 310058, People's Republic of China
| | - Huimin Xu
- Department of Environmental Engineering, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Engineering Research Center of Industrial Boiler & Furnace Flue Gas Pollution Control, Hangzhou, Zhejiang 310058, People's Republic of China
| | - Siyu Fang
- Department of Environmental Engineering, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Engineering Research Center of Industrial Boiler & Furnace Flue Gas Pollution Control, Hangzhou, Zhejiang 310058, People's Republic of China
| | - Yue Liu
- Department of Environmental Engineering, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Engineering Research Center of Industrial Boiler & Furnace Flue Gas Pollution Control, Hangzhou, Zhejiang 310058, People's Republic of China
| | - Zhongbiao Wu
- Department of Environmental Engineering, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Engineering Research Center of Industrial Boiler & Furnace Flue Gas Pollution Control, Hangzhou, Zhejiang 310058, People's Republic of China
| | - Jae-Hong Kim
- Department of Chemical and Environmental Engineering, Yale University, New Haven, Connecticut 06511, United States
| | - Xuanhao Wu
- Department of Environmental Engineering, Zhejiang University, Hangzhou, Zhejiang 310058, People's Republic of China
- Zhejiang Provincial Engineering Research Center of Industrial Boiler & Furnace Flue Gas Pollution Control, Hangzhou, Zhejiang 310058, People's Republic of China
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2
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Felsted RG, Graham TR, Zhao Y, Bazak JD, Nienhuis ET, Pauzauskie PJ, Joly AG, Pearce CI, Wang Z, Rosso KM. Anionic Effects on Concentrated Aqueous Lithium Ion Dynamics. J Phys Chem Lett 2024:5076-5087. [PMID: 38708887 DOI: 10.1021/acs.jpclett.4c00585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/07/2024]
Abstract
The dynamics, orientational anisotropy, diffusivity, viscosity, and density were measured for concentrated lithium salt solutions, including lithium chloride (LiCl), lithium bromide (LiBr), lithium nitrite (LiNO2), and lithium nitrate (LiNO3), with methyl thiocyanate as an infrared vibrational probe molecule, using two-dimensional infrared spectroscopy (2D IR), nuclear magnetic resonance (NMR) spectroscopy, and viscometry. The 2D IR, NMR, and viscosity results show that LiNO2 exhibits longer correlation times, lower diffusivity, and nearly 4 times greater viscosity compared to those of the other lithium salt solutions of the same concentration, suggesting that nitrite anions may strongly facilitate structure formation via strengthening water-ion network interactions, directly impacting bulk solution properties at sufficiently high concentrations. Additionally, the LiNO2 and LiNO3 solutions show significantly weakened chemical interactions between the lithium cations and the methyl thiocyanate when compared with those of the lithium halide salts.
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Affiliation(s)
- Robert G Felsted
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Trent R Graham
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Yatong Zhao
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - J David Bazak
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Emily T Nienhuis
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Peter J Pauzauskie
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
- Materials Science and Engineering Department, University of Washington, Seattle, Washington 98195, United States
| | - Alan G Joly
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Carolyn I Pearce
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
- Department of Crop and Soil Sciences, Washington State University, Pullman, Washington 99164, United States
| | - Zheming Wang
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Kevin M Rosso
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
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3
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Naseri Boroujeni S, Maribo-Mogensen B, Liang X, Kontogeorgis GM. New Electrical Conductivity Model for Electrolyte Solutions Based on the Debye-Hückel-Onsager Theory. J Phys Chem B 2023; 127:9954-9975. [PMID: 37948739 DOI: 10.1021/acs.jpcb.3c03381] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2023]
Abstract
A new electrical conductivity model is developed for unassociated electrolyte solutions based on the Debye-Hückel-Onsager theory. In this model, we assume that a single cation and a single anion with their crystallographic ionic radii are in a continuum medium of the solvent(s). We compare the predictions of the developed model with the experimental measurements of binary 1:1, 2:1, 1:2, 2:2, 1:3, 3:1, 2:3, 3:2, 3:3, 1:4, and 2:4 aqueous solutions in the temperature range 273.15-373.15 K. Our results are in good agreement with the experimental data. An extension of the model was formulated to incorporate ion pairing, and its effectiveness was evaluated across three essential systems: 2:2 aqueous sulfate solutions, ionic liquid-co-solvent systems, and NaCl-water-1,4-dioxane solutions. This adaptation demonstrated a strong correlation with experimental data, highlighting the broad applicability.
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Affiliation(s)
- Saman Naseri Boroujeni
- Center for Energy Resources Engineering, Department of Chemical and Biochemical Engineering, Technical University of Denmark (DTU), Søltofts Plads, Building 229, Kongens Lyngby 2800, Denmark
| | | | - Xiaodong Liang
- Center for Energy Resources Engineering, Department of Chemical and Biochemical Engineering, Technical University of Denmark (DTU), Søltofts Plads, Building 229, Kongens Lyngby 2800, Denmark
| | - Georgios M Kontogeorgis
- Center for Energy Resources Engineering, Department of Chemical and Biochemical Engineering, Technical University of Denmark (DTU), Søltofts Plads, Building 229, Kongens Lyngby 2800, Denmark
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4
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Schaefer D, Kohns M, Hasse H. Molecular modeling and simulation of aqueous solutions of alkali nitrates. J Chem Phys 2023; 158:134508. [PMID: 37031112 DOI: 10.1063/5.0141331] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2023] Open
Abstract
A set of molecular models for the alkali nitrates (LiNO3, NaNO3, KNO3, RbNO3, and CsNO3) in aqueous solutions is presented and used for predicting the thermophysical properties of these solutions with molecular dynamics simulations. The set of models is obtained from a combination of a model for the nitrate anion from the literature with a set of models for the alkali cations developed in previous works of our group. The water model is SPC/E and the Lorentz–Berthelot combining rules are used for describing the unlike interactions. This combination is shown to yield fair predictions of thermophysical and structural properties of the studied aqueous solutions, namely the density, the water activity and the mean ionic activity coefficient, the self-diffusion coefficients of the ions, and radial distribution functions, which were studied at 298 K and 1 bar; except for the density of the solutions of all five nitrates and the activity properties of solutions of NaNO3, which were also studied at 333 K. For calculating the water the activity and the mean ionic activity coefficient, the OPAS ( osmotic pressure for the activity of selvents) method was applied. The new models extend an ion model family for the alkali halides developed in previous works of our group in a consistent way.
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Affiliation(s)
- Dominik Schaefer
- Laboratory of Engineering Thermodynamics (LTD), RPTU Kaiserslautern, 67663 Kaiserslautern, Germany
| | - Maximilian Kohns
- Laboratory of Engineering Thermodynamics (LTD), RPTU Kaiserslautern, 67663 Kaiserslautern, Germany
| | - Hans Hasse
- Laboratory of Engineering Thermodynamics (LTD), RPTU Kaiserslautern, 67663 Kaiserslautern, Germany
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5
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Conrad JK, Mezyk SP, Isherwood LH, Baidak A, Pilgrim CD, Whittaker D, Orr RM, Pimblott SM, Horne GP. Gamma Radiation-Induced Degradation of Acetohydroxamic Acid (AHA) in Aqueous Nitrate and Nitric Acid Solutions Evaluated by Multiscale Modelling. Chemphyschem 2023; 24:e202200749. [PMID: 36470592 DOI: 10.1002/cphc.202200749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Revised: 11/11/2022] [Indexed: 12/12/2022]
Abstract
Acetohydroxamic acid (AHA) has been proposed for inclusion in advanced, single-cycle, used nuclear fuel reprocessing solvent systems for the reduction and complexation of plutonium and neptunium ions. For this application, a detailed description of the fundamental degradation of AHA in dilute aqueous nitric acid is required. To this end, we present a comprehensive, multiscale computer model for the coupled radiolytic and hydrolytic degradation of AHA in aqueous sodium nitrate and nitric acid solutions. Rate coefficients for the reactions of AHA and hydroxylamine (HA) with the oxidizing nitrate radical were measured for the first time using electron pulse radiolysis and used as inputs for the kinetic model. The computer model results are validated by comparison to experimental data from steady-state gamma ray irradiations, for which the agreement is excellent. The presented model accurately predicts the yields of the major degradation products of AHA: acetic acid, HA, nitrous oxide, and molecular hydrogen.
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Affiliation(s)
- Jacy K Conrad
- Center for Radiation Chemistry Research, Idaho National Laboratory, 1955 N. Fremont Ave., 83415, Idaho Falls, ID, USA
| | - Stephen P Mezyk
- Department of Chemistry and Biochemistry, California State University Long Beach, 1250 Bellflower Blvd, 90840, Long Beach, CA, USA
| | - Liam H Isherwood
- Dalton Cumbrian Facility, The University of Manchester, West Lakes Science Park, CA24 3HA, Moor Row, U. K.,Department of Chemistry, The University of Manchester, Oxford Rd, M13 9PL, Manchester, U.K
| | - Aliaksandr Baidak
- Dalton Cumbrian Facility, The University of Manchester, West Lakes Science Park, CA24 3HA, Moor Row, U. K.,Department of Chemistry, The University of Manchester, Oxford Rd, M13 9PL, Manchester, U.K
| | - Corey D Pilgrim
- Center for Radiation Chemistry Research, Idaho National Laboratory, 1955 N. Fremont Ave., 83415, Idaho Falls, ID, USA
| | - Daniel Whittaker
- National Nuclear Laboratory, Central Laboratory, Sellafield, Seascale, CA20 1PG, Cumbria, U.K
| | - Robin M Orr
- National Nuclear Laboratory, Central Laboratory, Sellafield, Seascale, CA20 1PG, Cumbria, U.K
| | - Simon M Pimblott
- Center for Radiation Chemistry Research, Idaho National Laboratory, 1955 N. Fremont Ave., 83415, Idaho Falls, ID, USA
| | - Gregory P Horne
- Center for Radiation Chemistry Research, Idaho National Laboratory, 1955 N. Fremont Ave., 83415, Idaho Falls, ID, USA
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6
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Reynolds JG, Nienhuis ET, Mergelsberg ST, Pearce CI, Rosso KM. The Apparent Reversal of the Law of Mass Action in Concentrated Multicomponent Aqueous Solutions. J Mol Liq 2023. [DOI: 10.1016/j.molliq.2023.121470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/27/2023]
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7
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Liu H, Fu H, Chipot C, Shao X, Cai W. Accurate Description of Solvent-Exposed Salt Bridges with a Non-polarizable Force Field Incorporating Solvent Effects. J Chem Inf Model 2022; 62:3863-3873. [PMID: 35920605 DOI: 10.1021/acs.jcim.2c00678] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The strength of salt bridges resulting from the interaction of cations and anions is modulated by their environment. However, polarization of the solvent molecules by the charged moieties makes the accurate description of cation-anion interactions in an aqueous solution by means of a pairwise additive potential energy function and classical combination rules particularly challenging. In this contribution, aiming at improving the representation of solvent-exposed salt-bridge interactions with an all-atom non-polarizable force field, we put forth here a parametrization strategy. First, the interaction of a cation and an anion is characterized by hybrid quantum mechanical/molecular mechanics (QM/MM) potential of mean force (PMF) calculations, whereby constantly exchanging solvent molecules around the ions are treated at the quantum mechanical level. The Lennard-Jones (LJ) parameters describing the salt-bridge ion pairs are then optimized to match the reference QM/MM PMFs through the so-called nonbonded FIX, or NBFIX, feature of the CHARMM force field. We apply the new set of parameters, coined CHARMM36m-SBFIX, to the calculation of association constants for the ammonium-acetate and guanidinium-acetate complexes, the osmotic pressures for glycine zwitterions, guanidinium, and acetate ions, and to the simulation of both folded and intrinsically disordered proteins. Our findings indicate that CHARMM36m-SBFIX improves the description of solvent-exposed salt-bridge interactions, both structurally and thermodynamically. However, application of this force field to the standard binding free-energy calculation of a protein-ligand complex featuring solvent-excluded salt-bridge interactions leads to a poor reproduction of the experimental value, suggesting that the parameters optimized in an aqueous solution cannot be readily transferred to describe solvent-excluded salt-bridge interactions. Put together, owing to their sensitivity to the environment, modeling salt-bridge interactions by means of a single, universal set of LJ parameters remains a daunting theoretical challenge.
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Affiliation(s)
- Han Liu
- Tianjin Key Laboratory of Biosensing and Molecular Recognition, State Key Laboratory of Medicinal Chemical Biology, Research Center for Analytical Sciences, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin 300071, China.,Haihe Laboratory of Sustainable Chemical Transformations, Tianjin 300192, China
| | - Haohao Fu
- Tianjin Key Laboratory of Biosensing and Molecular Recognition, State Key Laboratory of Medicinal Chemical Biology, Research Center for Analytical Sciences, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin 300071, China.,Haihe Laboratory of Sustainable Chemical Transformations, Tianjin 300192, China
| | - Christophe Chipot
- Laboratoire International Associé CNRS and University of Illinois at Urbana-Champaign, UMR n°7019, Université de Lorraine, F-54506 Vandœuvre-lès-Nancy, France.,Theoretical and Computational Biophysics Group, Beckman Institute, and Department of Physics, University of Illinois at Urbana-Champaign, Urbana 61801, Illinois, United States.,Department of Biochemistry and Molecular Biology and Gordon Center for Integrative Science, The University of Chicago, Chicago 60637, Illinois, United States
| | - Xueguang Shao
- Tianjin Key Laboratory of Biosensing and Molecular Recognition, State Key Laboratory of Medicinal Chemical Biology, Research Center for Analytical Sciences, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin 300071, China.,Haihe Laboratory of Sustainable Chemical Transformations, Tianjin 300192, China
| | - Wensheng Cai
- Tianjin Key Laboratory of Biosensing and Molecular Recognition, State Key Laboratory of Medicinal Chemical Biology, Research Center for Analytical Sciences, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin 300071, China.,Haihe Laboratory of Sustainable Chemical Transformations, Tianjin 300192, China
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8
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Zhang W, Yan T. A molecular dynamics investigation of La3+ and Lu3+-ligand speciation in aqueous solution. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.118367] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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9
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Reynolds JG. Solubilities in aqueous nitrate solutions that appear to reverse the law of mass action. Phys Chem Chem Phys 2021; 23:21407-21418. [PMID: 34553199 DOI: 10.1039/d1cp03124d] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Non-ideal aqueous electrolyte solutions have been studied since the start of the application of thermodynamics to chemistry in the late 19th century. The present study examines some of the most extreme non-ideal behavior ever observed: solubilities of alkali and NH4+ nitrate salts in water that appear to behave the opposite of how the Law of Mass Action would predict. A literature review discovered that the solubilities of NH4NO3 and many alkali nitrate salts increases when another nitrate-bearing electrolyte is added to solution. These occurrences were in concentrated solutions with insufficient water to provide all ions their preferred hydration number without sharing waters between ions. This water deficit results in the formation of contact ion-pairs as well as larger ion-clusters. These ion-clusters may be favored when there is more than one type of monovalent cation present.
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Affiliation(s)
- Jacob G Reynolds
- Washington River Protection Solutions, LLC, P. O. Box 850, Richland, WA, 99352, USA.
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10
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11
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Kolafa J. Pressure in Molecular Simulations with Scaled Charges. 1. Ionic Systems. J Phys Chem B 2020; 124:7379-7390. [PMID: 32790401 DOI: 10.1021/acs.jpcb.0c02641] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Charge scaling, rationalized as MDEC (molecular dynamics in electronic continuum) or ECC (electronic continuum correction), has become a widely used simple approach to how to avoid self-consistent induced dipoles yet approximately take into account the effects of electronic polarizability. It has been assumed that the continuum permittivity does not depend on density; in turn, pressure is calculated by standard formulas. In this work, we elaborate a complementary approximation of density-independent molecular polarizability and derive formulas for pressure corrections within the MDEC framework; real behavior lies between these two extremes. The pressure corrections for test ionic systems are huge and negative, leading to sizable densities in constant-pressure MDEC simulations. A comparison of MDEC results with equivalent polarizable systems gives a good pressure match for a crystal but very low MDEC pressures for ionic liquids. These results witness about the importance of a correct density dependence not only of continuum permittivity in MDEC simulations but also of polarizability in polarizable simulations.
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Affiliation(s)
- Jiří Kolafa
- Department of Physical Chemistry, University of Chemistry and Technology, Prague, Technická 5, 166 28 Praha 6, Czech Republic
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12
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Pedersen PD, Mikkelsen KV, Johnson MS. The unexpected effect of aqueous ion pairs on the forbidden n →π* transition in nitrate. Phys Chem Chem Phys 2020; 22:11678-11685. [PMID: 32406445 DOI: 10.1039/d0cp00958j] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Aqueous nitrate is ubiquitous in the environment, found for example in stratospheric clouds, tropospheric particulate matter, rain and snow, fertilized fields, rivers and the ocean. Its photolysis is initiated by absorption into the strongly forbidden n →π* transition. Photolysis reactivates deposited nitrate, releasing nitrogen oxides, and UV light is commonly used to break down nitrate pollution. The transition is doubly forbidden unless its symmetry is broken, giving a powerful means of probing the interactions of nitrate with its environment and of using experiment to validate the results of theory. In this study we demonstrate the remarkably different effects of the addition of a series of mono- and di-valent metal chlorides on the nitrate UV transition. While they all shift the transition to shorter wavelengths, the shift changes significantly from one to another. For the monovalent series Li+, Na+, K+, the blue shift decreases down the column being strongest for Li+ and weakest for K+. For the divalent series Mg2+, Ca2+, Ba2+, the opposite effect is observed with the energy shift of Ba2+ being an order of magnitude larger than for Mg2+. The absorption intensity also changes; the addition of Na+ and K+ decrease intensity whereas Li+ increases intensity. For the divalent cations an increase is seen for all three members of the series Mg2+, Ca2+ and Ba2+. Paradoxically, the effect of addition of CaCl2 to the solution is to decrease the environmental photolysis rate of nitrate; despite the increase in intensity, Ca2+ blue shifts the peak position above the tropospheric photolysis threshold around 300 nm. Using computational chemistry we conclude that the effects are due to the microscopic interactions of the nitrate anion and not continuum effects. Two microscopic mechanisms are investigated in detail, the formation of a nitrate monohydrate cluster and a contact ion pair. The contact ion pair shows the potential for significant impact on the energy and intensity of the transition.
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Affiliation(s)
- Pernille D Pedersen
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, 2100 Copenhagen, Denmark.
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13
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Cordeiro RM, Yusupov M, Razzokov J, Bogaerts A. Parametrization and Molecular Dynamics Simulations of Nitrogen Oxyanions and Oxyacids for Applications in Atmospheric and Biomolecular Sciences. J Phys Chem B 2020; 124:1082-1089. [DOI: 10.1021/acs.jpcb.9b08172] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Rodrigo M. Cordeiro
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, Avenida dos Estados 5001, CEP 09210-580 Santo André (SP), Brazil
| | - Maksudbek Yusupov
- Research Group PLASMANT, Department of Chemistry, University of Antwerp, Universiteitsplein 1, B-2610 Antwerp, Belgium
| | - Jamoliddin Razzokov
- Research Group PLASMANT, Department of Chemistry, University of Antwerp, Universiteitsplein 1, B-2610 Antwerp, Belgium
| | - Annemie Bogaerts
- Research Group PLASMANT, Department of Chemistry, University of Antwerp, Universiteitsplein 1, B-2610 Antwerp, Belgium
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14
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Melcr J, Ferreira TM, Jungwirth P, Ollila OHS. Improved Cation Binding to Lipid Bilayers with Negatively Charged POPS by Effective Inclusion of Electronic Polarization. J Chem Theory Comput 2019; 16:738-748. [PMID: 31762275 DOI: 10.1021/acs.jctc.9b00824] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Phosphatidylserine (PS) lipids are important signaling molecules and the most common negatively charged lipids in eukaryotic membranes. The signaling can be often regulated by calcium, but its interactions with PS headgroups are not fully understood. Classical molecular dynamics (MD) simulations can potentially give detailed description of lipid-ion interactions, but the results strongly depend on the used force field. Here, we apply the electronic continuum correction (ECC) to the Amber Lipid17 parameters of 1-palmitoyl-2-oleoyl-sn-glycero-3-phospho-l-serine (POPS) lipid to improve its interactions with K+, Na+, and Ca2+ ions. The partial charges of the headgroup, glycerol backbone, and carbonyls of POPS, bearing a unit negative charge, were scaled with a factor of 0.75, derived for monovalent ions, and the Lennard-Jones σ parameters of the same segments were scaled with a factor of 0.89. The resulting ECC-POPS model gives more realistic interactions with Na+ and Ca2+ cations than the original Amber Lipid17 parameters when validated using headgroup order parameters and the "electrometer concept". In ECC-lipids simulations, populations of complexes of Ca2+ cations with more than two PS lipids are negligible, and interactions of Ca2+ cations with only carboxylate groups are twice more likely than with only phosphate groups, while interactions with carbonyls almost entirely involve other groups as well. Our results pave the way for more realistic MD simulations of biomolecular systems with anionic membranes, allowing signaling processes involving PS and Ca2+ to be elucidated.
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Affiliation(s)
- Josef Melcr
- Institute of Organic Chemistry and Biochemistry , Czech Academy of Sciences , Flemingovo nám. 542/2 , CZ-16610 Prague 6 , Czech Republic.,Groningen Biomolecular Sciences and Biotechnology Institute and The Zernike Institute for Advanced Materials , University of Groningen , 9747 AG Groningen , The Netherlands
| | - Tiago M Ferreira
- NMR Group-Institut for Physics , Martin-Luther University Halle-Wittenberg , 06120 Halle , Germany
| | - Pavel Jungwirth
- Institute of Organic Chemistry and Biochemistry , Czech Academy of Sciences , Flemingovo nám. 542/2 , CZ-16610 Prague 6 , Czech Republic
| | - O H Samuli Ollila
- Institute of Organic Chemistry and Biochemistry , Czech Academy of Sciences , Flemingovo nám. 542/2 , CZ-16610 Prague 6 , Czech Republic.,Institute of Biotechnology , University of Helsinki , Helsinki FI-00014 , Finland
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15
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16
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Manalastas W, Kumar S, Verma V, Zhang L, Yuan D, Srinivasan M. Water in Rechargeable Multivalent-Ion Batteries: An Electrochemical Pandora's Box. CHEMSUSCHEM 2019; 12:379-396. [PMID: 30480870 DOI: 10.1002/cssc.201801523] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2018] [Revised: 11/22/2018] [Indexed: 06/09/2023]
Abstract
Multivalent-ion batteries built on water-based electrolytes represent energy storage at suitable price points, competitive performance, and enhanced safety. However, to comply with modern energy-density requirements, the battery must be reversible within an operating voltage window greater than 1.23 V or the electrochemical stability limits of free water. Taking advantage of its powerful solvation and catalytic activities, adding water to electrolyte preparations can unlock a wider gamut of liquid mixtures compared with strictly nonaqueous systems. However, a point-by-point sweep of all potential formulations is arduous and ineffective without some form of systematic rationalization. The present Review consolidates recent progress, pitfalls, limits, and insights critical to expediting aqueous electrolyte designs to boost multivalent-ion battery outputs.
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Affiliation(s)
- William Manalastas
- School of Materials Science and Engineering, Nanyang Technological University, 11 Faculty Ave, 639977, Singapore, Singapore
| | - Sonal Kumar
- School of Materials Science and Engineering, Nanyang Technological University, 11 Faculty Ave, 639977, Singapore, Singapore
| | - Vivek Verma
- School of Materials Science and Engineering, Nanyang Technological University, 11 Faculty Ave, 639977, Singapore, Singapore
| | - Liping Zhang
- Energy Research Institute @ NTU, Nanyang Technological University, 50 Nanyang Drive, 637553, Singapore, Singapore
| | - Du Yuan
- Energy Research Institute @ NTU, Nanyang Technological University, 50 Nanyang Drive, 637553, Singapore, Singapore
| | - Madhavi Srinivasan
- School of Materials Science and Engineering, Nanyang Technological University, 11 Faculty Ave, 639977, Singapore, Singapore
- Energy Research Institute @ NTU, Nanyang Technological University, 50 Nanyang Drive, 637553, Singapore, Singapore
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Lewis NHC, Fournier JA, Carpenter WB, Tokmakoff A. Direct Observation of Ion Pairing in Aqueous Nitric Acid Using 2D Infrared Spectroscopy. J Phys Chem B 2018; 123:225-238. [DOI: 10.1021/acs.jpcb.8b10019] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Nicholas H. C. Lewis
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States
| | - Joseph A. Fournier
- Department of Chemistry, Washington University in St. Louis, St. Louis, Missouri 63130, United States
| | - William B. Carpenter
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States
| | - Andrei Tokmakoff
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, United States
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Wang HW, Vlcek L, Neuefeind JC, Page K, Irle S, Simonson JM, Stack AG. Decoding Oxyanion Aqueous Solvation Structure: A Potassium Nitrate Example at Saturation. J Phys Chem B 2018; 122:7584-7589. [PMID: 29991255 DOI: 10.1021/acs.jpcb.8b05895] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The ability to probe the structure of a salt solution at the atomic scale is fundamentally important for our understanding of many chemical reactions and their mechanisms. The capability of neutron diffraction to "see" hydrogen (or deuterium) and other light isotopes is exceptional for resolving the structural complexity around the dissolved solutes in aqueous electrolytes. We have made measurements using oxygen isotopes on aqueous nitrate to reveal a small hydrogen-bonded water coordination number (3.9 ± 1.2) around a nitrate oxyanion. This is compared to estimates made using the existing method of nitrogen isotope substitution and those of computational simulations (>5-6 water molecules). The low water coordination number, combined with a comparison to classical molecular dynamics simulations, suggests that ion-pair formation is significant. This insight demonstrates the utility of experimental diffraction data for benchmarking atomistic computer simulations, enabling the development of more accurate intermolecular potentials.
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Bruce EE, van der Vegt NFA. Does an electronic continuum correction improve effective short-range ion-ion interactions in aqueous solution? J Chem Phys 2018; 148:222816. [DOI: 10.1063/1.5017101] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
Affiliation(s)
- Ellen E. Bruce
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Center of Smart Interfaces, Technische Universität Darmstadt, Alarich-Weiss-Straße 10, D-64287 Darmstadt, Germany
| | - Nico F. A. van der Vegt
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Center of Smart Interfaces, Technische Universität Darmstadt, Alarich-Weiss-Straße 10, D-64287 Darmstadt, Germany
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Yadav S, Chandra A. Preferential solvation, ion pairing, and dynamics of concentrated aqueous solutions of divalent metal nitrate salts. J Chem Phys 2017; 147:244503. [DOI: 10.1063/1.4996273] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Sushma Yadav
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208016, India
| | - Amalendu Chandra
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208016, India
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