Origin of the S* Excited State Feature of Carotenoids in Light-Harvesting Complex 1 from Purple Photosynthetic Bacteria

Discovery of ultra-weakly coupled β-carotene J-aggregates by machine learning

Carotenoid aggregates are omnipresent in natural world and can be synthesized in hydrophilic environments. Despite different types of carotenoid aggregates have been reported hitherto, the way to predict the formation of carotenoid aggregates, i.e. H- or J-aggregates, is still challenging. Here, for the first time, we established machine learning models that can predict the formation behavior of carotenoid aggregates. The models are trained based on a database containing different types of carotenoid aggregates reported in the literatures. With the help of these machine learning models, we found a series of unknown types of β-carotene J-aggregates. These novel aggregates are ultra-weakly coupled and have absorption bands up to 700 nm, different from all the carotenoid aggregates reported previously. Our work demonstrates that the machine learning is a powerful tool to predict the formation behavior of carotenoid aggregates and can further lead into the discovery of new carotenoid aggregates for different applications.

Reinvestigation on primary processes of PSII-dimer from Thermosynechococcus vulcanus by femtosecond pump-probe spectroscopy

Cyanobacterial photosynthetic apparatus efficiently capture sunlight, and the energy is subsequently transferred to photosystem I (PSI) and II (PSII), to produce electrochemical potentials. PSII is a unique membrane protein complex that photo-catalyzes oxidation of water and majorly contains photosynthetic pigments of chlorophyll a and carotenoids. In the present study, the ultrafast energy transfer and charge separation dynamics of PSII from a thermophilic cyanobacterium Thermosynechococcus vulcanus were reinvestigated by femtosecond pump-probe spectroscopic measurements under low temperature and weak intensity excitation condition. The results imply the two possible models of the energy transfers and subsequent charge separation in PSII. One is the previously suggested "transfer-to-trapped limit" model. Another model suggests that the energy transfers from core CP43 and CP47 antennas to the primary electron donor ChlD1 with time-constants of 0.71 ps and 3.28 ps at 140 K (0.17 and 1.33 ps at 296 K), respectively and that the pheophytin anion (PheoD1-) is generated with the time-constant of 43.0 ps at 140 K (14.8 ps at 296 K) upon excitation into the Qy band of chlorophyll a at 670 nm. The secondary electron transfer to quinone QA: PheoD1-QA → PheoD1QA- is observed with the time-constant of 650 ps only at 296 K. On the other hand, an inefficient β-carotene → chlorophyll a energy transfer (33%) occurred after excitation to the S2 state of β-carotene at 500 nm. Instead, the carotenoid triplet state appeared in an ultrafast timescale after excitation at 500 nm.

Twisted Carotenoids Do Not Support Efficient Intramolecular Singlet Fission in the Orange Carotenoid Protein

Singlet exciton fission is the spin-allowed generation of two triplet electronic excited states from a singlet state. Intramolecular singlet fission has been suggested to occur on individual carotenoid molecules within protein complexes provided that the conjugated backbone is twisted out of plane. However, this hypothesis has been forwarded only in protein complexes containing multiple carotenoids and bacteriochlorophylls in close contact. To test the hypothesis on twisted carotenoids in a "minimal" one-carotenoid system, we study the orange carotenoid protein (OCP). OCP exists in two forms: in its orange form (OCPo), the single bound carotenoid is twisted, whereas in its red form (OCPr), the carotenoid is planar. To enable room-temperature spectroscopy on canthaxanthin-binding OCPo and OCPr without laser-induced photoconversion, we trap them in a trehalose glass. Using transient absorption spectroscopy, we show that there is no evidence of long-lived triplet generation through intramolecular singlet fission despite the canthaxanthin twist in OCPo.

Quest for singlet fission of organic sulfur-containing systems in the higher lying singlet excited state: application prospects of anti-Kasha's rule

In this study, we explore the possibilities of the deactivating pathways of organic thione containing systems through first-principles calculations. We particularly pay attention to the second lying singlet excited state, S₂, due to its large energy difference from the lowest lying S₁ state in the sulfur-containing systems. Several theoretical models including the previously synthesized thiones and the strategically designed molecules are investigated to search for the basic conjugation unit that exhibits the prospect of S₂ fission. Various molecular motifs and different substituents are combined to maneuver the relative alignment of the relevant low excited energy states. The results lead us to conclude that the thione derivatives, under rational and delicate molecular designs, may be engineered to possess a sufficiently high S₂-S₁ energy gap as high as 2 eV and that these systems may exhibit S₂ fission to triplet excitons in the red to near infrared region.

Plenty of Room on the Top: Pathways and Spectroscopic Signatures of Singlet Fission from Upper Singlet States

We investigate dynamic signatures of the singlet fission (SF) process triggered by the excitation of a molecular system to an upper singlet state S_N (N > 1) and develop a computational methodology for the simulation of nonlinear spectroscopic signals revealing the S_N → TT₁ SF in real time. We demonstrate that SF can proceed directly from the upper state S_N, bypassing the lowest excited state, S₁. We determine the main S_N → TT₁ reaction pathways and show by computer simulation and spectroscopic measurements that the S_N-initiated SF can be faster and more efficient than the traditionally studied S₁ → TT₁ SF. We claim that the S_N → TT₁ SF offers novel promising opportunities for engineering SF systems and enhancing SF yields.

Introduction of cysteine-mediated quenching in the CP43 protein of photosystem II builds resilience to high-light stress in a cyanobacterium

Photosystem (PS) II is prone to photodamage both as a direct consequence of light, and indirectly by producing reactive oxygen species. Engineering high-light tolerance in cyanobacteria with minimal impact on PSII function is desirable in synthetic biology. IsiA, a CP43 homolog found exclusively in cyanobacteria, can dissipate excess light energy. We have recently determined that the sole cysteine residue of IsiA in Synechocystis sp. PCC 6803 has a critical role in non-photochemical quenching. Similar cysteine-mediated energy quenching has also been observed in green‑sulfur bacteria. Sequence analysis of IsiA and CP43 aligns cysteine 260 of IsiA with valine 277 of CP43 in Synechocystis sp. PCC 6803. In the current study, we explore the impact of replacing valine 277 of CP43 to a cysteine on growth, PSII activity and high-light tolerance. Our results imply a decline in the PSII output for the mutant (CP43V277C) presumably due to the dissipation of absorbed light energy by cysteine. Spectroscopic analysis of isolated PSII from this mutant strain also suggests a delayed transfer of excitation energy from CP43-associated chlorophyll a to PSII reaction center. The mutation makes the PSII high-light tolerant and provides a small advantage in growth under high-light conditions. This previously unexplored strategy to engineer high-light tolerance could be a step further towards developing cyanobacterial cells as biofactories.

Altering singlet fission pathways in perylene-dimers; perylene-diimide versus perylene-monoimide

We used a systematic approach to shed light on the inherent differences in perylenes, namely monoimides versus diimides, including coplanarity and dipole moment, and their impact on singlet fission (SF) by designing, synthesizing, and probing a full fledged series of phenylene- and naphthalene-linked dimers. Next to changing the functionality of the perylene core, we probed the effect of the spacers and their varying degrees of rotational freedom, molecular electrostatic potentials, and intramolecular interactions on the SF-mechanism and -efficiencies. An arsenal of spectroscopic techniques revealed that for perylene-monoimides, a strong charge-transfer mixing with the singlet and triplet excited states restricts SF and yields low triplet quantum yields. This is accompanied by an up-conversion channel that includes geminate triplet-triplet recombination. Using perylene-diimides alters the SF-mechanism by populating a charge-separated-state intermediate, which either favors or shuts-down SF. Napthylene-spacers bring about higher triplet quantum yields and overall better SF-performance for all perylene-monoimides and perylene-diimides. The key to better SF-performance is rotational freedom because it facilitates the overall excited-state polarization and amplifies intramolecular interactions between chromophores.

Carotenoid-to-(bacterio)chlorophyll energy transfer in LH2 antenna complexes from Rba. sphaeroides reconstituted with non-native (bacterio)chlorophylls

Six variants of the LH2 antenna complex from Rba. sphaeroides, comprising the native B800-B850, B800-free LH2 (B850) and four LH2s with various (bacterio)chlorophylls reconstituted into the B800 site, have been investigated with static and time-resolved optical spectroscopies at room temperature and at 77 K. The study particularly focused on how reconstitution of a non-native (bacterio)chlorophylls affects excitation energy transfer between the naturally bound carotenoid spheroidene and artificially substituted pigments in the B800 site. Results demonstrate there is no apparent trend in the overall energy transfer rate from spheroidene to B850 bacteriochlorophyll a; however, a trend in energy transfer rate from the spheroidene S₁ state to Q_y of the B800 (bacterio)chlorophylls is noticeable. These outcomes were applied to test the validity of previously proposed energy values of the spheroidene S₁ state, supporting a value in the vicinity of 13,400 cm^-1 (746 nm).

Probing the local lipid environment of the Rhodobacter sphaeroides cytochrome bc1 and Synechocystis sp. PCC 6803 cytochrome b6f complexes with styrene maleic acid

Intracytoplasmic vesicles (chromatophores) in the photosynthetic bacterium Rhodobacter sphaeroides represent a minimal structural and functional unit for absorbing photons and utilising their energy for the generation of ATP. The cytochrome bc₁ complex (cytbc₁) is one of the four major components of the chromatophore alongside the reaction centre-light harvesting 1-PufX core complex (RC-LH1-PufX), the light-harvesting 2 complex (LH2), and ATP synthase. Although the membrane organisation of these complexes is known, their local lipid environments have not been investigated. Here we utilise poly(styrene-alt-maleic acid) (SMA) co-polymers as a tool to simultaneously determine the local lipid environments of the RC-LH1-PufX, LH2 and cytbc₁ complexes. SMA has previously been reported to effectively solubilise complexes in lipid-rich membrane regions whilst leaving lipid-poor ordered protein arrays intact. Here we show that SMA solubilises cytbc₁ complexes with an efficiency of nearly 70%, whereas solubilisation of RC-LH1-PufX and LH2 was only 10% and 22% respectively. This high susceptibility of cytbc₁ to SMA solubilisation is consistent with this complex residing in a locally lipid-rich region. SMA solubilised cytbc₁ complexes retain their native dimeric structure and co-purify with 56 ± 6 phospholipids from the chromatophore membrane. We extended this approach to the model cyanobacterium Synechocystis sp. PCC 6803, and show that the cytochrome b₆f complex (cytb₆f) and Photosystem II (PSII) complexes are susceptible to SMA solubilisation, suggesting they also reside in lipid-rich environments. Thus, lipid-rich membrane regions could be a general requirement for cytbc₁/cytb₆f complexes, providing a favourable local solvent to promote rapid quinol/quinone binding and release at the Q₀ and Q_i sites.

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SMA preferentially solubilises cytbc₁ from chromatophore membranes.

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Solubilised cytbc₁ SMALPs contain dimeric complexes co-purified with 56 lipids.

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SMA-resistant fractions contain RC-LH1-PufX and LH2 rich membrane patches.

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The Rba. sphaeroides cytbc₁ complex is likely to reside in a lipid-rich environment.

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Similar results for Synechocystis suggest cytbc₁/b₆f may be universally lipid-rich.