Shin J, Berezhkovskii AM, Kolomeisky AB. Crowding breaks the forward/backward symmetry of transition times in biased random walks.
J Chem Phys 2021;
154:204104. [PMID:
34241169 PMCID:
PMC8411889 DOI:
10.1063/5.0053634]
[Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Accepted: 05/09/2021] [Indexed: 11/14/2022] Open
Abstract
Microscopic mechanisms of natural processes are frequently understood in terms of random walk models by analyzing local particle transitions. This is because these models properly account for dynamic processes at the molecular level and provide a clear physical picture. Recent theoretical studies made a surprising discovery that in complex systems, the symmetry of molecular forward/backward transition times with respect to local bias in the dynamics may be broken and it may take longer to go downhill than uphill. The physical origins of these phenomena remain not fully understood. Here, we explore in more detail the microscopic features of the symmetry breaking in the forward/backward transition times by analyzing exactly solvable discrete-state stochastic models. In particular, we consider a specific case of two random walkers on a four-site periodic lattice as the way to represent the general systems with multiple pathways. It is found that the asymmetry in transition times depends on several factors that include the degree of deviation from equilibrium, the particle crowding, and methods of measurements of dynamic properties. Our theoretical analysis suggests that the asymmetry in transition times can be explored experimentally for determining the important microscopic features of natural processes by quantitatively measuring the local deviations from equilibrium and the degrees of crowding.
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