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Al-Jabiri MH, Hazrah AS, Jäger W. Conformers of Vanillic Acid and Its Monohydrate: A Rotational Spectroscopic and Theoretical Study. J Phys Chem A 2022; 126:6686-6694. [DOI: 10.1021/acs.jpca.2c05120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Mohamad H. Al-Jabiri
- Department of Chemistry, University of Alberta, Edmonton, Alberta T6G 2G2, Canada
| | - Arsh S. Hazrah
- Department of Chemistry, University of Alberta, Edmonton, Alberta T6G 2G2, Canada
| | - Wolfgang Jäger
- Department of Chemistry, University of Alberta, Edmonton, Alberta T6G 2G2, Canada
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2
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Cabezas C, Juanes M, Saragi RT, Lesarri A, Peña I. Water binding to the atmospheric oxidation product methyl vinyl ketone. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 270:120846. [PMID: 35033807 DOI: 10.1016/j.saa.2021.120846] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Accepted: 12/29/2021] [Indexed: 06/14/2023]
Abstract
Methyl vinyl ketone is one of the major oxidation products of isoprene, and therefore, an important precursor of secondary organic aerosol. Understanding its interactions with water is relevant to gain insight into aerosol formation and improve the predictive power of atmospheric chemistry models. The molecular complex formed between methyl vinyl ketone and water has been generated in a supersonic jet and characterized using high-resolution microwave spectroscopy in combination with quantum chemistry calculations. In this study, we show that methyl vinyl ketone interacts with water forming four 1:1 isomers connected by O - H···O and C - H···O hydrogen bond interactions. Water has been found to preferentially bind to the antiperiplanar conformation of methyl vinyl ketone. Evidence of a large amplitude motion arising from the methyl internal rotation has been found in the rotational spectra of the dimer. The threefold methyl internal rotation barrier heights have been further determined and discussed for all the species.
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Affiliation(s)
- Carlos Cabezas
- Instituto de Física Fundamental (IFF-CSIC), Group of Molecular Astrophysics, C/ Serrano 121, Madrid 28006, Spain.
| | - Marcos Juanes
- Departamento de Química Física y Química Inorgánica, Facultad de Ciencias, Universidad de Valladolid, Paseo de Belén 7, Valladolid 47011, Spain
| | - Rizalina T Saragi
- Departamento de Química Física y Química Inorgánica, Facultad de Ciencias, Universidad de Valladolid, Paseo de Belén 7, Valladolid 47011, Spain
| | - Alberto Lesarri
- Departamento de Química Física y Química Inorgánica, Facultad de Ciencias-I.U. CINQUIMA, Universidad de Valladolid, Paseo de Belén 7, Valladolid 47011, Spain
| | - Isabel Peña
- Departamento de Química Física y Química Inorgánica, Facultad de Ciencias, Universidad de Valladolid, Paseo de Belén 7, Valladolid 47011, Spain.
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3
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Murugachandran SI, Sanz ME. Interactions of limonene with the water dimer. Phys Chem Chem Phys 2022; 24:26529-26538. [DOI: 10.1039/d2cp04174j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
The interactions of limonene with the water dimer have been characterised through the identification of seven different isomers.
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Affiliation(s)
| | - M. Eugenia Sanz
- Department of Chemistry, King's College London, London, SE1 1DB, UK
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4
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Burevschi E, Peña I, Sanz ME. Geminal Diol Formation from the Interaction of a Ketone with Water in the Gas Phase: Structure and Reactivity of Cyclooctanone-(H 2O) 1,2 Clusters. J Phys Chem Lett 2021; 12:12419-12425. [PMID: 34939809 DOI: 10.1021/acs.jpclett.1c03493] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The hydration of ketones is known to occur in condensed phases, but it is not considered to be favorable in the gas phase due to restricted water content. We report the first evidence of geminal diol formation upon ketone hydration in the gas phase, obtained through the investigation of the interactions of cyclooctanone with water using broadband rotational spectroscopy. Oxygen-atom exchange between water and cyclooctanone was observed for two isomers of cyclooctanone-H2O and two isomers of cyclooctanone-(H2O)2. All complexes were unambiguously identified from the analysis of the rotational spectrum of the parent species and all their 13C and 18O isotopologues, and their heavy-atom substitution and effective structures were determined as well as their binding interactions. The production of gem-diols from gas-phase hydration of ketones has implications for atmospheric chemistry and opens a new channel for secondary aerosol formation.
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Affiliation(s)
| | - Isabel Peña
- Department of Chemistry, King's College London, London SE1 1DB, U.K
| | - M Eugenia Sanz
- Department of Chemistry, King's College London, London SE1 1DB, U.K
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5
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Murugachandran SI, Tang J, Peña I, Loru D, Sanz ME. New Insights into Secondary Organic Aerosol Formation: Water Binding to Limonene. J Phys Chem Lett 2021; 12:1081-1086. [PMID: 33471530 DOI: 10.1021/acs.jpclett.0c03574] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Limonene is an abundant monoterpene in the atmosphere and one of the main precursors of secondary organic aerosol. Understanding its interactions with atmospheric molecules is crucial to explain aerosol formation and the various products obtained from competing reaction pathways. Here, using broadband rotational spectroscopy in combination with computational calculations, we show that limonene effectively interacts with water, forming a variety of complexes. Seven different isomers of limonene-H2O, where water and limonene are connected by O-H···π and C-H···O interactions, have been unambiguously identified. Water has been found to preferentially bind to the endocyclic double bond of limonene. Our findings demonstrate a striking ability of water to attach to limonene and enrich our knowledge on the possible interactions of limonene in the atmosphere.
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Affiliation(s)
| | - Jackson Tang
- Department of Chemistry, King's College London, London SE1 1DB, U.K
| | - Isabel Peña
- Department of Chemistry, King's College London, London SE1 1DB, U.K
| | - Donatella Loru
- Department of Chemistry, King's College London, London SE1 1DB, U.K
| | - M Eugenia Sanz
- Department of Chemistry, King's College London, London SE1 1DB, U.K
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6
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Cheng W, Zheng Y, Feng G, Grabow JU, Gou Q. Conformation and bonding of 2-methoxypyridine and its monohydrate from rotational spectra. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 239:118434. [PMID: 32438304 DOI: 10.1016/j.saa.2020.118434] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2020] [Revised: 04/27/2020] [Accepted: 04/28/2020] [Indexed: 06/11/2023]
Abstract
Rotational spectra of 2-methoxypyridine and its monohydrate have been characterized by pulsed jet Fourier transform microwave spectroscopy and complementary ab initio calculations. Rotational spectra of the parent monomer and seven mono-substituted isotopologues (13C and 15N) were measured in natural abundance, which allow determining the accurate structure of the skeleton of 2-methyoxypyridine. The barrier to the methyl internal rotation was determined from the A/E torsional symmetry species of the rotational transitions. For the 2-methyoxypyridine⋯H2O complex, rotational spectra of the parent dimer and isotopologues formed with isotopically enriched water (H218O, HOD, DOH and D2O) indicate that the observed isomer is stabilized by a strong OH⋯N and a secondary bifurcated (CH)2⋯O weak hydrogen bonds. Bader's quantum theory of atoms in molecules and Johnson's non-covalent interaction analyses were applied and visualized to have a better understanding of the non-covalent interactions in 2-methyoxypyridine⋯H2O.
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Affiliation(s)
- Wanying Cheng
- Department of Chemistry, School of Chemistry and Chemical Engineering, Chongqing University, Daxuecheng South Rd. 55, 401331 Chongqing, China
| | - Yang Zheng
- Department of Chemistry, School of Chemistry and Chemical Engineering, Chongqing University, Daxuecheng South Rd. 55, 401331 Chongqing, China
| | - Gang Feng
- Department of Chemistry, School of Chemistry and Chemical Engineering, Chongqing University, Daxuecheng South Rd. 55, 401331 Chongqing, China
| | - Jens-Uwe Grabow
- Institut für Physikalische Chemie & Elektrochemie, Leibniz-Universität Hannover, Callinstraβe 3A, 30167 Hannover, Germany
| | - Qian Gou
- Department of Chemistry, School of Chemistry and Chemical Engineering, Chongqing University, Daxuecheng South Rd. 55, 401331 Chongqing, China.
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7
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Yamamura R, Suenaga T, Oura M, Tokushima T, Takahashi O. pH dependence of aqueous oxalic acid observed by X-ray absorption and emission spectroscopy. Chem Phys Lett 2020. [DOI: 10.1016/j.cplett.2019.136895] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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8
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Domingos SR, Martin K, Avarvari N, Schnell M. Water Docking Bias in [4]Helicene. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201902889] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Sérgio R. Domingos
- Deutsches Elektronen-Synchrotron DESY Notkestraße 85 22607 Hamburg Germany
| | - Kévin Martin
- MOLTECH-Anjou, UMR 6200, CNRS, UNIV Angers 2 bd Lavoisier 49045 Angers Cedex France
| | - Narcis Avarvari
- MOLTECH-Anjou, UMR 6200, CNRS, UNIV Angers 2 bd Lavoisier 49045 Angers Cedex France
| | - Melanie Schnell
- Deutsches Elektronen-Synchrotron DESY Notkestraße 85 22607 Hamburg Germany
- Institut für Physikalische ChemieChristian-Albrechts-Universität zu Kiel Max-Eyth-Straße 1 24118 Kiel Germany
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9
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Domingos SR, Martin K, Avarvari N, Schnell M. Water Docking Bias in [4]Helicene. Angew Chem Int Ed Engl 2019; 58:11257-11261. [PMID: 31081241 DOI: 10.1002/anie.201902889] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2019] [Revised: 05/10/2019] [Indexed: 11/06/2022]
Abstract
We report on the one- and two-water clusters of [4]helicene, the smallest polycyclic aromatic hydrocarbon with a helical sense, which were captured in the gas phase using high-resolution rotational spectroscopy. The structures of the complexes are unambiguously revealed using microwave spectra of isotopically enriched species. In the one-water cluster, the apparent splitting pattern is consistent with a tunneling motion that encompasses an exchange of strongly and weakly bonded water hydrogens. This motion is "locked" in the two-water cluster. The relevant intermolecular contacts, symmetry, and aromaticity effects are unveiled for the microsolvated chiral topologies. These observations entail the first glance at the structures and internal dynamics of the water binding motifs of a chiral polycyclic aromatic hydrocarbon.
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Affiliation(s)
- Sérgio R Domingos
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607, Hamburg, Germany
| | - Kévin Martin
- MOLTECH-Anjou, UMR 6200, CNRS, UNIV Angers, 2 bd Lavoisier, 49045, Angers Cedex, France
| | - Narcis Avarvari
- MOLTECH-Anjou, UMR 6200, CNRS, UNIV Angers, 2 bd Lavoisier, 49045, Angers Cedex, France
| | - Melanie Schnell
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607, Hamburg, Germany.,Institut für Physikalische Chemie, Christian-Albrechts-Universität zu Kiel, Max-Eyth-Straße 1, 24118, Kiel, Germany
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10
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Schnitzler EG, Seifert NA, Kusuma I, Jäger W. Rotational Spectroscopy of p-Toluic Acid and Its 1:1 Complex with Water. J Phys Chem A 2017; 121:8625-8631. [DOI: 10.1021/acs.jpca.7b08984] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | - Nathan A. Seifert
- Department of Chemistry, University of Alberta, Edmonton, AB T6G
2G2, Canada
| | - Ignes Kusuma
- Department of Chemistry, University of Alberta, Edmonton, AB T6G
2G2, Canada
| | - Wolfgang Jäger
- Department of Chemistry, University of Alberta, Edmonton, AB T6G
2G2, Canada
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11
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Hu YC, Zhang XH, Li QS, Zhang YH, Li ZS. Effect of Water on the Structure and Stability of Hydrogen-Bonded Oxalic Acid Dimer. Chemphyschem 2017; 18:3375-3383. [DOI: 10.1002/cphc.201700950] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2017] [Revised: 10/06/2017] [Indexed: 01/11/2023]
Affiliation(s)
- Yuan-Chun Hu
- School of Chemistry and Chemical Engineering; Beijing Institute of Technology; Beijing 100081 P.R. China
| | - Xiu-Hui Zhang
- School of Chemistry and Chemical Engineering; Beijing Institute of Technology; Beijing 100081 P.R. China
| | - Quan-Song Li
- School of Chemistry and Chemical Engineering; Beijing Institute of Technology; Beijing 100081 P.R. China
| | - Yun-Hong Zhang
- School of Chemistry and Chemical Engineering; Beijing Institute of Technology; Beijing 100081 P.R. China
| | - Ze-Sheng Li
- School of Chemistry and Chemical Engineering; Beijing Institute of Technology; Beijing 100081 P.R. China
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12
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Domingos SR, Pérez C, Schnell M. On the structural intricacies of a metabolic precursor: Direct spectroscopic detection of water-induced conformational reshaping of mevalonolactone. J Chem Phys 2017; 147:124310. [DOI: 10.1063/1.4997162] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Sérgio R. Domingos
- Max Planck Institute for the Structure and Dynamics of Matter, Luruper Chaussee 149, 22761 Hamburg, Germany
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Cristóbal Pérez
- Max Planck Institute for the Structure and Dynamics of Matter, Luruper Chaussee 149, 22761 Hamburg, Germany
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Melanie Schnell
- Max Planck Institute for the Structure and Dynamics of Matter, Luruper Chaussee 149, 22761 Hamburg, Germany
- Deutsches Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
- Christian-Albrechts-Universität zu Kiel, Max-Eyth-Str.1, 24118 Kiel, Germany
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13
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Schnitzler EG, Seifert NA, Ghosh S, Thomas J, Xu Y, Jäger W. Hydration of the simplest α-keto acid: a rotational spectroscopic and ab initio study of the pyruvic acid–water complex. Phys Chem Chem Phys 2017; 19:4440-4446. [DOI: 10.1039/c6cp08741h] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Non-covalent interactions analysis of hydrogen bonding in the pyruvic acid water complex.
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Affiliation(s)
- Elijah G. Schnitzler
- Department of Chemistry
- University of Alberta
- 11227 Saskatchewan Drive
- Edmonton
- Canada
| | - Nathan A. Seifert
- Department of Chemistry
- University of Alberta
- 11227 Saskatchewan Drive
- Edmonton
- Canada
| | - Supriya Ghosh
- Department of Chemistry
- University of Alberta
- 11227 Saskatchewan Drive
- Edmonton
- Canada
| | - Javix Thomas
- Department of Chemistry
- University of Alberta
- 11227 Saskatchewan Drive
- Edmonton
- Canada
| | - Yunjie Xu
- Department of Chemistry
- University of Alberta
- 11227 Saskatchewan Drive
- Edmonton
- Canada
| | - Wolfgang Jäger
- Department of Chemistry
- University of Alberta
- 11227 Saskatchewan Drive
- Edmonton
- Canada
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14
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Huang W, Thomas J, Jäger W, Xu Y. Tunnelling and barrier-less motions in the 2-fluoroethanol–water complex: a rotational spectroscopic and ab initio study. Phys Chem Chem Phys 2017; 19:12221-12228. [DOI: 10.1039/c7cp01666b] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Rotational spectrum of 2-fluoroethanol–water reveals interesting water and methyl internal rotation tunneling and barrier-less motions in the hydrogen-bonded complex.
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Affiliation(s)
- Wenyuan Huang
- Department of Chemistry
- University of Alberta
- Edmonton
- Canada
| | - Javix Thomas
- Department of Chemistry
- University of Alberta
- Edmonton
- Canada
| | - Wolfgang Jäger
- Department of Chemistry
- University of Alberta
- Edmonton
- Canada
| | - Yunjie Xu
- Department of Chemistry
- University of Alberta
- Edmonton
- Canada
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