1
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Zhang W, Zheng D, Han H, Wan Z, Zhong J, Ji Y, Li G, Francisco JS, An T. Promoting Cl 2O Generation from the HOCl + HOCl Reaction on Aqueous/Frozen Air-Water Interfaces. J Am Chem Soc 2024; 146:31935-31944. [PMID: 39514221 DOI: 10.1021/jacs.4c11337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2024]
Abstract
Hypochlorous acid (HOCl) is considered a temporary reservoir of dichlorine monoxide (Cl2O). Previous studies have suggested that Cl2O is difficult to generate from the reaction of HOCl + HOCl in the gas phase. Here, we demonstrate that Cl2O can be generated from the HOCl + HOCl reaction at aqueous/frozen air-water interfaces, which is confirmed by ab initio molecular dynamic calculations. Distinct from the one-step reaction in the gas phase, our results show that Cl2O generation from HOCl + HOCl on aqueous/frozen interfaces involves two elementary steps, namely, one HOCl deprotonation and one Cl-abstraction from the other HOCl. Specifically, the mechanisms of neutral/acidic catalysis from interfacial water/nitric acid and base catalysis from ammonia, methylamine and dimethylamine have been examined. For the former, HOCl deprotonation is the rate-limiting step, and the total k of Cl2O generation increases to 9.23 × 10-9-9.10 × 10-1 M-1 s-1 at the aqueous interface and 3.20 × 10-7-4.10 × 10-3 M-1 s-1 at the frozen interface, which is at least 23 and 25 orders of magnitude greater than that of gaseous k (3.31 × 10-32 M-1 s-1). For the latter, the rate-limiting step is changed to Cl-abstraction, whose total k dramatically increases to 1.40-8.97 × 107 M-1 s-1 at the aqueous interface and 7.12-9.99 × 106 M-1 s-1 at the frozen interface. Interestingly, the Cl2O production rates ranked in the order of dimethylamine < methylamine < ammonia and decreased with increasing catalytic alkalinity. These findings provide new insights for understanding other Cl2O sources beyond the ClONO2 + HOCl reaction.
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Affiliation(s)
- Weina Zhang
- Guangdong-Hong Kong-Macao Joint Laboratory for Contaminants Exposure and Health, Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou 510006, China
- Guangzhou Key Laboratory of Environmental Catalysis and Pollution Control, Key Laboratory for City Cluster Environmental Safety and Green Development of the Ministry of Education, School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou 510006, China
| | - Dayuan Zheng
- Guangdong-Hong Kong-Macao Joint Laboratory for Contaminants Exposure and Health, Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou 510006, China
- Guangzhou Key Laboratory of Environmental Catalysis and Pollution Control, Key Laboratory for City Cluster Environmental Safety and Green Development of the Ministry of Education, School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou 510006, China
| | - Haolin Han
- Guangdong-Hong Kong-Macao Joint Laboratory for Contaminants Exposure and Health, Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou 510006, China
- Guangzhou Key Laboratory of Environmental Catalysis and Pollution Control, Key Laboratory for City Cluster Environmental Safety and Green Development of the Ministry of Education, School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou 510006, China
| | - Zhengyi Wan
- Sinopec (Beijing) Research Institute of Chemical Industry, Beijing 10003, China
- Department of Earth and Environmental Science and Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6316, United States
| | - Jie Zhong
- School of Petroleum Engineering, China University of Petroleum (East China), Qingdao 266580, China
| | - Yuemeng Ji
- Guangdong-Hong Kong-Macao Joint Laboratory for Contaminants Exposure and Health, Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou 510006, China
- Guangzhou Key Laboratory of Environmental Catalysis and Pollution Control, Key Laboratory for City Cluster Environmental Safety and Green Development of the Ministry of Education, School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou 510006, China
| | - Guiying Li
- Guangdong-Hong Kong-Macao Joint Laboratory for Contaminants Exposure and Health, Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou 510006, China
- Guangzhou Key Laboratory of Environmental Catalysis and Pollution Control, Key Laboratory for City Cluster Environmental Safety and Green Development of the Ministry of Education, School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou 510006, China
| | - Joseph S Francisco
- Department of Earth and Environmental Science and Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6316, United States
| | - Taicheng An
- Guangdong-Hong Kong-Macao Joint Laboratory for Contaminants Exposure and Health, Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou 510006, China
- Guangzhou Key Laboratory of Environmental Catalysis and Pollution Control, Key Laboratory for City Cluster Environmental Safety and Green Development of the Ministry of Education, School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou 510006, China
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2
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Li M, Wang P, Yu X, Su Y, Zhao J. Impact of Nuclear Quantum Effects on the Structural Properties of Protonated Water Clusters. J Phys Chem A 2024; 128:5954-5962. [PMID: 39007820 DOI: 10.1021/acs.jpca.4c03340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/16/2024]
Abstract
Nuclear quantum effects (NQEs) play a crucial role in hydrogen-bonded systems due to quantum tunneling and proton fluctuation. Our understanding of how NQEs affect microstructures mainly focuses on bulk phases of liquids and solids but remains deficient for water clusters, including their hydrogen nuclei, hydrogen-bonded configurations, and temperature dependence. Here, we conducted ab initio molecular dynamics (MD) and path integral MD simulations to investigate the influence of NQEs on the structural properties of protonated water clusters H+(H2O)n (n = 3, 6, 9, 12). The results reveal that the NQEs become less evident as the cluster size increases due to the competition between NQEs and electrostatic interactions. Simulations of several H+(H2O)6 isomers at different temperatures indicate that the effect of elevated temperature on proton transfer is related to the initial structure. Interestingly, the process of proton transfer also involves the interconversion between Zundel-type and Eigen-type isomers. These findings significantly deepen our understanding of ion-water and water-water interactions, opening new avenues for the study of hydrated ion clusters and related systems.
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Affiliation(s)
- Mengxu Li
- Key Laboratory of Materials Modification by Laser, Ion and Electron Beams (Dalian University of Technology), Ministry of Education, Dalian 116024, China
| | | | - Xueke Yu
- Key Laboratory of Materials Modification by Laser, Ion and Electron Beams (Dalian University of Technology), Ministry of Education, Dalian 116024, China
| | - Yan Su
- Key Laboratory of Materials Modification by Laser, Ion and Electron Beams (Dalian University of Technology), Ministry of Education, Dalian 116024, China
| | - Jijun Zhao
- Guangdong Basic Research Center of Excellence for Structure and Fundamental Interactions of Matter, Guangdong Provincial Key Laboratory of Quantum Engineering and Quantum Materials, School of Physics, South China Normal University, Guangzhou 510006, China
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3
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Lin HH, Wang CI, Yang CH, Secario MK, Hsu CP. Two-Step Machine Learning Approach for Charge-Transfer Coupling with Structurally Diverse Data. J Phys Chem A 2024; 128:271-280. [PMID: 38157315 DOI: 10.1021/acs.jpca.3c04524] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2024]
Abstract
Electronic coupling is important in determining charge-transfer rates and dynamics. Coupling strength is sensitive to both intermolecular, e.g., orientation or distance, and intramolecular degrees of freedom. Hence, it is challenging to build an accurate machine learning model to predict electronic coupling of molecular pairs, especially for those derived from the amorphous phase, for which intermolecular configurations are much more diverse than those derived from crystals. In this work, we devise a new prediction algorithm that employs two consecutive KRR models. The first model predicts molecular orbitals (MOs) from structural variation for each fragment, and coupling is further predicted by using the overlap integral included in a second model. With our two-step procedure, we achieved mean absolute errors of 0.27 meV for an ethylene dimer and 1.99 meV for a naphthalene pair, much improved accuracy amounting to 14-fold and 3-fold error reductions, respectively. In addition, MOs from the first model can also be the starting point to obtain other quantum chemical properties from atomistic structures. This approach is also compatible with a MO predictor with sufficient accuracy.
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Affiliation(s)
- Hung-Hsuan Lin
- Institute of Chemistry, Academia Sinica, 128 Section 2 Academia Road, Nankang, Taipei 115, Taiwan
- Molecular Science and Digital Innovation Center, Genetics Generation Advancement Corp, No. 28, Ln. 36, Xinhu First Rd., Neihu, Taipei 114, Taiwan
| | - Chun-I Wang
- Institute of Chemistry, Academia Sinica, 128 Section 2 Academia Road, Nankang, Taipei 115, Taiwan
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Chou-Hsun Yang
- Institute of Chemistry, Academia Sinica, 128 Section 2 Academia Road, Nankang, Taipei 115, Taiwan
| | - Muhammad Khari Secario
- Institute of Chemistry, Academia Sinica, 128 Section 2 Academia Road, Nankang, Taipei 115, Taiwan
- Taiwan International Graduate Program on Sustainable Chemical Science & Technology, Academia Sinica Institute of Chemistry, 128 Academia Road Sec.2, Nankang, Taipei 115, Taiwan
- Department of Applied Chemistry, National Yang Ming Chiao Tung University, 1001 University Road, Hsinchu 300, Taiwan
| | - Chao-Ping Hsu
- Institute of Chemistry, Academia Sinica, 128 Section 2 Academia Road, Nankang, Taipei 115, Taiwan
- Division of Physics, National Center for Theoretical Sciences, 1, Section 4, Roosevelt Road, Taipei 106, Taiwan
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4
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Li XY, Wang T, Cai YC, Meng ZD, Nan JW, Ye JY, Yi J, Zhan DP, Tian N, Zhou ZY, Sun SG. Mechanism of Cations Suppressing Proton Diffusion Kinetics for Electrocatalysis. Angew Chem Int Ed Engl 2023; 62:e202218669. [PMID: 36762956 DOI: 10.1002/anie.202218669] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 02/07/2023] [Accepted: 02/10/2023] [Indexed: 02/11/2023]
Abstract
Proton transfer is crucial for electrocatalysis. Accumulating cations at electrochemical interfaces can alter the proton transfer rate and then tune electrocatalytic performance. However, the mechanism for regulating proton transfer remains ambiguous. Here, we quantify the cation effect on proton diffusion in solution by hydrogen evolution on microelectrodes, revealing the rate can be suppressed by more than 10 times. Different from the prevalent opinions that proton transport is slowed down by modified electric field, we found water structure imposes a more evident effect on kinetics. FTIR test and path integral molecular dynamics simulation indicate that proton prefers to wander within the hydration shell of cations rather than to hop rapidly along water wires. Low connectivity of water networks disrupted by cations corrupts the fast-moving path in bulk water. This study highlights the promising way for regulating proton kinetics via a modified water structure.
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Affiliation(s)
- Xiao-Yu Li
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Tao Wang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Yu-Chen Cai
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Zhao-Dong Meng
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Jing-Wen Nan
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Jin-Yu Ye
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Jun Yi
- School of Electronic Science and Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Dong-Ping Zhan
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Na Tian
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Zhi-You Zhou
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
| | - Shi-Gang Sun
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Tan Kah Kee Innovation Laboratory, Collaborative Innovation Center of Chemistry for Energy Materials, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, P. R. China
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5
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Druchok M, Krasnov V, Krokhmalskii T, Cardoso E Bufalo T, Martins de Souza S, Rojas O, Derzhko O. Toward a quasiphase transition in the single-file chain of water molecules: Simple lattice model. J Chem Phys 2023; 158:104304. [PMID: 36922143 DOI: 10.1063/5.0133720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2023] Open
Abstract
Recently, Ma et al. [Phys. Rev. Lett. 118, 027402 (2017)] have suggested that water molecules encapsulated in (6,5) single-wall carbon nanotube experience a temperature-induced quasiphase transition around 150 K interpreted as changes in the water dipoles orientation. We discuss further this temperature-driven quasiphase transition performing quantum chemical calculations and molecular dynamics simulations and, most importantly, suggesting a simple lattice model to reproduce the properties of the one-dimensional confined finite arrays of water molecules. The lattice model takes into account not only the short-range and long-range interactions but also the rotations in a narrow tube, and both ingredients provide an explanation for a temperature-driven orientational ordering of the water molecules, which persists within a relatively wide temperature range.
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Affiliation(s)
- Maksym Druchok
- Institute for Condensed Matter Physics, National Academy of Sciences of Ukraine, Svientsitskii Street 1, 79011 L'viv, Ukraine
| | - Volodymyr Krasnov
- Institute for Condensed Matter Physics, National Academy of Sciences of Ukraine, Svientsitskii Street 1, 79011 L'viv, Ukraine
| | - Taras Krokhmalskii
- Institute for Condensed Matter Physics, National Academy of Sciences of Ukraine, Svientsitskii Street 1, 79011 L'viv, Ukraine
| | | | - Sergio Martins de Souza
- Departamento de Fisica, Universidade Federal de Lavras, CP 3037, 37200-000 Lavras-MG, Brazil
| | - Onofre Rojas
- Departamento de Fisica, Universidade Federal de Lavras, CP 3037, 37200-000 Lavras-MG, Brazil
| | - Oleg Derzhko
- Institute for Condensed Matter Physics, National Academy of Sciences of Ukraine, Svientsitskii Street 1, 79011 L'viv, Ukraine
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6
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Long Z, Tuckerman ME. Hydroxide Diffusion in Functionalized Cylindrical Nanopores as Idealized Models of Anion Exchange Membrane Environments: An Ab Initio Molecular Dynamics Study. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2023; 127:2792-2804. [PMID: 36968146 PMCID: PMC10034739 DOI: 10.1021/acs.jpcc.2c05747] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Revised: 12/28/2022] [Indexed: 06/18/2023]
Abstract
Anion exchange membranes (AEMs) have attracted significant interest for their applications in fuel cells and other electrochemical devices in recent years. Understanding water distributions and hydroxide transport mechanisms within AEMs is critical to improving their performance as concerns hydroxide conductivity. Recently, nanoconfined environments have been used to mimic AEM environments. Following this approach, we construct nanoconfined cylindrical pore structures using graphane nanotubes (GNs) functionalized with trimethylammonium cations as models of local AEM morphology. These structures were then used to investigate hydroxide transport using ab initio molecular dynamics (AIMD). The simulations showed that hydroxide transport is suppressed in these confined environments relative to the bulk solution although the mechanism is dominated by structural diffusion. One factor causing the suppressed hydroxide transport is the reduced proton transfer (PT) rates due to changes in hydroxide and water solvation patterns under confinement compared to bulk solution as well as strong interactions between hydroxide ions and the tethered cation groups.
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Affiliation(s)
- Zhuoran Long
- Department
of Chemistry, New York University, New York, New York10003, United States
| | - Mark E. Tuckerman
- Department
of Chemistry, New York University, New York, New York10003, United States
- Courant
Institute of Mathematical Science, New York
University, New York, New York10012, United States
- NYU-ECNU
Center for Computational Chemistry at NYU Shanghai, 3663 Zhongshan Road North, Shanghai200062, China
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7
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Lamaire A, Cools-Ceuppens M, Bocus M, Verstraelen T, Van Speybroeck V. Quantum Free Energy Profiles for Molecular Proton Transfers. J Chem Theory Comput 2022; 19:18-24. [PMID: 36563337 PMCID: PMC9835831 DOI: 10.1021/acs.jctc.2c00874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Although many molecular dynamics simulations treat the atomic nuclei as classical particles, an adequate description of nuclear quantum effects (NQEs) is indispensable when studying proton transfer reactions. Herein, quantum free energy profiles are constructed for three typical proton transfers, which properly take NQEs into account using the path integral formalism. The computational cost of the simulations is kept tractable by deriving machine learning potentials. It is shown that the classical and quasi-classical centroid free energy profiles of the proton transfers deviate substantially from the exact quantum free energy profile.
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8
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Materials discovery of ion-selective membranes using artificial intelligence. Commun Chem 2022; 5:132. [PMID: 36697945 PMCID: PMC9814132 DOI: 10.1038/s42004-022-00744-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Accepted: 09/29/2022] [Indexed: 01/28/2023] Open
Abstract
Significant attempts have been made to improve the production of ion-selective membranes (ISMs) with higher efficiency and lower prices, while the traditional methods have drawbacks of limitations, high cost of experiments, and time-consuming computations. One of the best approaches to remove the experimental limitations is artificial intelligence (AI). This review discusses the role of AI in materials discovery and ISMs engineering. The AI can minimize the need for experimental tests by data analysis to accelerate computational methods based on models using the results of ISMs simulations. The coupling with computational chemistry makes it possible for the AI to consider atomic features in the output models since AI acts as a bridge between the experimental data and computational chemistry to develop models that can use experimental data and atomic properties. This hybrid method can be used in materials discovery of the membranes for ion extraction to investigate capabilities, challenges, and future perspectives of the AI-based materials discovery, which can pave the path for ISMs engineering.
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9
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Litman Y, Pós ES, Box CL, Martinazzo R, Maurer RJ, Rossi M. Dissipative tunneling rates through the incorporation of first-principles electronic friction in instanton rate theory. I. Theory. J Chem Phys 2022; 156:194106. [PMID: 35597633 DOI: 10.1063/5.0088399] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Reactions involving adsorbates on metallic surfaces and impurities in bulk metals are ubiquitous in a wide range of technological applications. The theoretical modeling of such reactions presents a formidable challenge for theory because nuclear quantum effects (NQEs) can play a prominent role and the coupling of the atomic motion with the electrons in the metal gives rise to important non-adiabatic effects (NAEs) that alter atomic dynamics. In this work, we derive a theoretical framework that captures both NQEs and NAEs and, due to its high efficiency, can be applied to first-principles calculations of reaction rates in high-dimensional realistic systems. More specifically, we develop a method that we coin ring polymer instanton with explicit friction (RPI-EF), starting from the ring polymer instanton formalism applied to a system-bath model. We derive general equations that incorporate the spatial and frequency dependence of the friction tensor and then combine this method with the ab initio electronic friction formalism for the calculation of thermal reaction rates. We show that the connection between RPI-EF and the form of the electronic friction tensor presented in this work does not require any further approximations, and it is expected to be valid as long as the approximations of both underlying theories remain valid.
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Affiliation(s)
- Y Litman
- MPI for the Structure and Dynamics of Matter, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - E S Pós
- MPI for the Structure and Dynamics of Matter, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - C L Box
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - R Martinazzo
- Department of Chemistry, Università degli Studi di Milano, Via Golgi 19, 20133 Milano, Italy
| | - R J Maurer
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - M Rossi
- MPI for the Structure and Dynamics of Matter, Luruper Chaussee 149, 22761 Hamburg, Germany
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10
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Xu L, Jiang DE. Proton dynamics in water confined at the interface of the graphene-MXene heterostructure. J Chem Phys 2021; 155:234707. [PMID: 34937381 DOI: 10.1063/5.0066835] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Heterostructures of 2D materials offer a fertile ground to study ion transport and charge storage. Here, we use ab initio molecular dynamics to examine the proton-transfer/diffusion and redox behavior in a water layer confined in the graphene-Ti3C2O2 heterostructure. We find that in comparison with the similar interface of water confined between Ti3C2O2 layers, the proton redox rate in the dissimilar interface of graphene-Ti3C2O2 is much higher, owing to the very different interfacial structure as well as the interfacial electric field induced by an electron transfer in the latter. Water molecules in the dissimilar interface of the graphene-Ti3C2O2 heterostructure form a denser hydrogen-bond network with a preferred orientation of water molecules, leading to an increase in proton mobility with proton concentration in the graphene-Ti3C2O2 interface. As the proton concentration further increases, proton mobility decreases due to increasingly more frequent surface redox events that slow down proton mobility due to binding with surface O atoms. Our work provides important insights into how the dissimilar interface and their associated interfacial structure and properties impact proton transfer and redox in the confined space.
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Affiliation(s)
- Lihua Xu
- Department of Chemical and Environmental Engineering, University of California, Riverside, California 92521, USA
| | - De-En Jiang
- Department of Chemical and Environmental Engineering, University of California, Riverside, California 92521, USA
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11
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Corti HR, Appignanesi GA, Barbosa MC, Bordin JR, Calero C, Camisasca G, Elola MD, Franzese G, Gallo P, Hassanali A, Huang K, Laria D, Menéndez CA, de Oca JMM, Longinotti MP, Rodriguez J, Rovere M, Scherlis D, Szleifer I. Structure and dynamics of nanoconfined water and aqueous solutions. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2021; 44:136. [PMID: 34779954 DOI: 10.1140/epje/s10189-021-00136-4] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Accepted: 10/06/2021] [Indexed: 06/13/2023]
Abstract
This review is devoted to discussing recent progress on the structure, thermodynamic, reactivity, and dynamics of water and aqueous systems confined within different types of nanopores, synthetic and biological. Currently, this is a branch of water science that has attracted enormous attention of researchers from different fields interested to extend the understanding of the anomalous properties of bulk water to the nanoscopic domain. From a fundamental perspective, the interactions of water and solutes with a confining surface dramatically modify the liquid's structure and, consequently, both its thermodynamical and dynamical behaviors, breaking the validity of the classical thermodynamic and phenomenological description of the transport properties of aqueous systems. Additionally, man-made nanopores and porous materials have emerged as promising solutions to challenging problems such as water purification, biosensing, nanofluidic logic and gating, and energy storage and conversion, while aquaporin, ion channels, and nuclear pore complex nanopores regulate many biological functions such as the conduction of water, the generation of action potentials, and the storage of genetic material. In this work, the more recent experimental and molecular simulations advances in this exciting and rapidly evolving field will be reported and critically discussed.
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Affiliation(s)
- Horacio R Corti
- Departmento de Física de la Materia Condensada & Instituto de Nanociencia y Nanotecnología (CNEA-CONICET), Comisión Nacional de Energía Atómica, B1650LWP, Buenos Aires, Argentina.
| | - Gustavo A Appignanesi
- INQUISUR, Departamento de Química, Universidad Nacional del Sur (UNS)-CONICET, 8000, Bahía Blanca, Argentina
| | - Marcia C Barbosa
- Institute of Physics, Federal University of Rio Grande do Sul, 91501-970, Porto Alegre, Brazil
| | - J Rafael Bordin
- Department of Physics, Institute of Physics and Mathematics, 96050-500, Pelotas, RS, Brazil
| | - Carles Calero
- Secció de Física Estadística i Interdisciplinària - Departament de Física de la Matèria Condensada, Universitat de Barcelona & Institut de Nanociència i Nanotecnologia (IN2UB), Universitat de Barcelona, 08028, Barcelona, Spain
| | - Gaia Camisasca
- Dipartimento di Matematica e Fisica, Università degli Studi Roma Tre, 00146, Roma, Italy
| | - M Dolores Elola
- Departmento de Física de la Materia Condensada & Instituto de Nanociencia y Nanotecnología (CNEA-CONICET), Comisión Nacional de Energía Atómica, B1650LWP, Buenos Aires, Argentina
| | - Giancarlo Franzese
- Secció de Física Estadística i Interdisciplinària - Departament de Física de la Matèria Condensada, Universitat de Barcelona & Institut de Nanociència i Nanotecnologia (IN2UB), Universitat de Barcelona, 08028, Barcelona, Spain
| | - Paola Gallo
- Dipartimento di Matematica e Fisica, Università degli Studi Roma Tre, 00146, Roma, Italy
| | - Ali Hassanali
- Condensed Matter and Statistical Physics Section (CMSP), The International Center for Theoretical Physics (ICTP), Trieste, Italy
| | - Kai Huang
- Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen, Guangdong, China
| | - Daniel Laria
- Departmento de Física de la Materia Condensada & Instituto de Nanociencia y Nanotecnología (CNEA-CONICET), Comisión Nacional de Energía Atómica, B1650LWP, Buenos Aires, Argentina
- Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE-CONICET), Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Cintia A Menéndez
- INQUISUR, Departamento de Química, Universidad Nacional del Sur (UNS)-CONICET, 8000, Bahía Blanca, Argentina
| | - Joan M Montes de Oca
- INQUISUR, Departamento de Química, Universidad Nacional del Sur (UNS)-CONICET, 8000, Bahía Blanca, Argentina
| | - M Paula Longinotti
- Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE-CONICET), Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Javier Rodriguez
- Departmento de Física de la Materia Condensada & Instituto de Nanociencia y Nanotecnología (CNEA-CONICET), Comisión Nacional de Energía Atómica, B1650LWP, Buenos Aires, Argentina
- Escuela de Ciencia y Tecnología, Universidad Nacional de General San Martín, San Martín, Buenos Aires, Argentina
| | - Mauro Rovere
- Dipartimento di Matematica e Fisica, Università degli Studi Roma Tre, 00146, Roma, Italy
| | - Damián Scherlis
- Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE-CONICET), Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Igal Szleifer
- Biomedical Engineering Department, Northwestern University, Evanston, USA
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12
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Ogawa T, Ohashi H, Anilkumar GM, Tamaki T, Yamaguchi T. Suitable acid groups and density in electrolytes to facilitate proton conduction. Phys Chem Chem Phys 2021; 23:23778-23786. [PMID: 34643626 DOI: 10.1039/d1cp00718a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Proton conducting materials suffer from low proton conductivity under low-relative humidity (RH) conditions. Previously, it was reported that acid-acid interactions, where acids interact with each other at close distances, can facilitate proton conduction without water movement and are promising for overcoming this drawback [T. Ogawa, H. Ohashi, T. Tamaki and T. Yamaguchi, Chem. Phys. Lett., 2019, 731, 136627]. However, acid groups have not been compared to find a suitable acid group and density for the interaction, which is important to experimentally synthesize the material. Here, we performed ab initio calculations to identify acid groups and acid densities as a polymer design that effectively causes acid-acid interactions. The evaluation method employed parameters based on several different optimized coordination interactions of acids and water molecules. The results show that the order of the abilities of polymer electrolytes to readily induce acid-acid interactions is hydrocarbon-based phosphonated polymers > phosphonated aromatic hydrocarbon polymers > perfluorosulfonic acid polymers ≈ perfluorophosphonic acid polymers > sulfonated aromatic hydrocarbon polymers. The acid-acid interaction becomes stronger as the distance between acids decreases. The preferable distance between phosphonate moieties is within 13 Å.
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Affiliation(s)
- Takaya Ogawa
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Nagatsuta 4259, Midori-ku, Yokohama 226-8503, Japan.
| | - Hidenori Ohashi
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Nagatsuta 4259, Midori-ku, Yokohama 226-8503, Japan.
| | - Gopinathan M Anilkumar
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Nagatsuta 4259, Midori-ku, Yokohama 226-8503, Japan. .,Research & Development Center, Noritake, Co., Ltd., 300 Higashiyama, Miyoshi cho, Miyoshi, Aichi 470-0293, Japan
| | - Takanori Tamaki
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Nagatsuta 4259, Midori-ku, Yokohama 226-8503, Japan. .,Kanagawa Institute of Industrial Science and Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
| | - Takeo Yamaguchi
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, Nagatsuta 4259, Midori-ku, Yokohama 226-8503, Japan. .,Kanagawa Institute of Industrial Science and Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
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13
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Kronberg R, Laasonen K. Dynamics and Surface Propensity of H + and OH - within Rigid Interfacial Water: Implications for Electrocatalysis. J Phys Chem Lett 2021; 12:10128-10134. [PMID: 34636561 PMCID: PMC8543677 DOI: 10.1021/acs.jpclett.1c02493] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2021] [Accepted: 09/29/2021] [Indexed: 06/13/2023]
Abstract
Facile solvent reorganization promoting ion transfer across the solid-liquid interface is considered a prerequisite for efficient electrocatalysis. We provide first-principles insight into this notion by examining water self-ion dynamics at a highly rigid NaCl(100)-water interface. Through extensive density functional theory molecular dynamics simulations, we demonstrate for both acidic and alkaline solutions that Grotthuss dynamics is not impeded by a rigid water structure. Conversely, decreased proton transfer barriers and a striking propensity of H3O+ and OH- for stationary interfacial water are found. Differences in the ideal hydration structure of the ions, however, distinguish their behavior at the water contact layer. While hydronium can maintain its optimal solvation, the preferentially hypercoordinated hydroxide is repelled from the immediate vicinity of the surface due to interfacial coordination reduction. This has implications for alkaline hydrogen electrosorption in which the formation of undercoordinated OH- at the surface is proposed to contribute to the observed sluggish kinetics.
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14
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Plé T, Huppert S, Finocchi F, Depondt P, Bonella S. Anharmonic spectral features via trajectory-based quantum dynamics: A perturbative analysis of the interplay between dynamics and sampling. J Chem Phys 2021; 155:104108. [PMID: 34525824 DOI: 10.1063/5.0056824] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The performance of different approximate algorithms for computing anharmonic features in vibrational spectra is analyzed and compared on model and more realistic systems that present relevant nuclear quantum effects. The methods considered combine approximate sampling of the quantum thermal distribution with classical time propagation and include Matsubara dynamics, path integral dynamics approaches, linearized initial value representation, and the recently introduced adaptive quantum thermal bath. A perturbative analysis of these different methods enables us to account for the observed numerical performance on prototypes for overtones and combination bands and to draw qualitatively correct trends for the numerical results obtained for Fermi resonances. Our results prove that the unequal performances of these approaches often derive from the method employed to sample initial conditions and not, as usually assumed, from the lack of coherence in the time propagation. Furthermore, as confirmed by the analysis reported in Benson and Althorpe, J. Chem. Phys. 130, 194510 (2021), we demonstrate, both via the perturbative approach and numerically, that path integral dynamics methods fail to reproduce the intensities of these anharmonic features and follow purely classical trends with respect to their temperature behavior. Finally, the remarkably accurate performance of the adaptive quantum thermal bath approach is documented and motivated.
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Affiliation(s)
- Thomas Plé
- Sorbonne Université, CNRS, Institut des NanoSciences de Paris, INSP, 4 Place Jussieu, F-75005 Paris, France
| | - Simon Huppert
- Sorbonne Université, CNRS, Institut des NanoSciences de Paris, INSP, 4 Place Jussieu, F-75005 Paris, France
| | - Fabio Finocchi
- Sorbonne Université, CNRS, Institut des NanoSciences de Paris, INSP, 4 Place Jussieu, F-75005 Paris, France
| | - Philippe Depondt
- Sorbonne Université, CNRS, Institut des NanoSciences de Paris, INSP, 4 Place Jussieu, F-75005 Paris, France
| | - Sara Bonella
- CECAM Centre Européen de Calcul Atomique et Moléculaire, École Polytechnique Fédérale de Lausanne, Batochimie, Avenue Forel 2, 1015 Lausanne, Switzerland
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15
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Arntsen C, Chen C, Calio PB, Li C, Voth GA. The hopping mechanism of the hydrated excess proton and its contribution to proton diffusion in water. J Chem Phys 2021; 154:194506. [PMID: 34240917 DOI: 10.1063/5.0040758] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
In this work, a series of analyses are performed on ab initio molecular dynamics simulations of a hydrated excess proton in water to quantify the relative occurrence of concerted hopping events and "rattling" events and thus to further elucidate the hopping mechanism of proton transport in water. Contrary to results reported in certain earlier papers, the new analysis finds that concerted hopping events do occur in all simulations but that the majority of events are the product of proton rattling, where the excess proton will rattle between two or more waters. The results are consistent with the proposed "special-pair dance" model of the hydrated excess proton wherein the acceptor water molecule for the proton transfer will quickly change (resonate between three equivalent special pairs) until a decisive proton hop occurs. To remove the misleading effect of simple rattling, a filter was applied to the trajectory such that hopping events that were followed by back hops to the original water are not counted. A steep reduction in the number of multiple hopping events is found when the filter is applied, suggesting that many multiple hopping events that occur in the unfiltered trajectory are largely the product of rattling, contrary to prior suggestions. Comparing the continuous correlation function of the filtered and unfiltered trajectories, we find agreement with experimental values for the proton hopping time and Eigen-Zundel interconversion time, respectively.
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Affiliation(s)
- Christopher Arntsen
- Department of Chemistry, Youngstown State University, Youngstown, Ohio 44555, USA
| | - Chen Chen
- Department of Mechanical and Nuclear Engineering, Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - Paul B Calio
- Department of Chemistry, Chicago Center for Theoretical Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA
| | - Chenghan Li
- Department of Chemistry, Chicago Center for Theoretical Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA
| | - Gregory A Voth
- Department of Chemistry, Chicago Center for Theoretical Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA
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16
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Rossi M. Progress and challenges in ab initio simulations of quantum nuclei in weakly bonded systems. J Chem Phys 2021; 154:170902. [PMID: 34241065 DOI: 10.1063/5.0042572] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Abstract
Atomistic simulations based on the first-principles of quantum mechanics are reaching unprecedented length scales. This progress is due to the growth in computational power allied with the development of new methodologies that allow the treatment of electrons and nuclei as quantum particles. In the realm of materials science, where the quest for desirable emergent properties relies increasingly on soft weakly bonded materials, such methods have become indispensable. In this Perspective, an overview of simulation methods that are applicable for large system sizes and that can capture the quantum nature of electrons and nuclei in the adiabatic approximation is given. In addition, the remaining challenges are discussed, especially regarding the inclusion of nuclear quantum effects (NQEs) beyond a harmonic or perturbative treatment, the impact of NQEs on electronic properties of weakly bonded systems, and how different first-principles potential energy surfaces can change the impact of NQEs on the atomic structure and dynamics of weakly bonded systems.
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Affiliation(s)
- Mariana Rossi
- Max Planck Institute for the Structure and Dynamics of Matter, Luruper Chaussee 149, 22761 Hamburg, Germany
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17
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Drużbicki K, Gaboardi M, Fernandez-Alonso F. Dynamics & Spectroscopy with Neutrons-Recent Developments & Emerging Opportunities. Polymers (Basel) 2021; 13:1440. [PMID: 33947108 PMCID: PMC8125526 DOI: 10.3390/polym13091440] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Accepted: 04/27/2021] [Indexed: 12/19/2022] Open
Abstract
This work provides an up-to-date overview of recent developments in neutron spectroscopic techniques and associated computational tools to interrogate the structural properties and dynamical behavior of complex and disordered materials, with a focus on those of a soft and polymeric nature. These have and continue to pave the way for new scientific opportunities simply thought unthinkable not so long ago, and have particularly benefited from advances in high-resolution, broadband techniques spanning energy transfers from the meV to the eV. Topical areas include the identification and robust assignment of low-energy modes underpinning functionality in soft solids and supramolecular frameworks, or the quantification in the laboratory of hitherto unexplored nuclear quantum effects dictating thermodynamic properties. In addition to novel classes of materials, we also discuss recent discoveries around water and its phase diagram, which continue to surprise us. All throughout, emphasis is placed on linking these ongoing and exciting experimental and computational developments to specific scientific questions in the context of the discovery of new materials for sustainable technologies.
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Affiliation(s)
- Kacper Drużbicki
- Materials Physics Center, CSIC-UPV/EHU, Paseo Manuel de Lardizabal 5, 20018 Donostia-San Sebastian, Spain;
- Polish Academy of Sciences, Center of Molecular and Macromolecular Studies, Sienkiewicza 112, 90-363 Lodz, Poland
| | - Mattia Gaboardi
- Elettra—Sincrotrone Trieste S.C.p.A., S.S. 14 km 163.5 in Area Science Park, 34149 Trieste, Italy;
| | - Felix Fernandez-Alonso
- Materials Physics Center, CSIC-UPV/EHU, Paseo Manuel de Lardizabal 5, 20018 Donostia-San Sebastian, Spain;
- Donostia International Physics Center (DIPC), Paseo Manuel de Lardizabal 4, 20018 Donostia-San Sebastian, Spain
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, UK
- IKERBASQUE, Basque Foundation for Science, Plaza Euskadi 5, 48009 Bilbao, Spain
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18
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Klein BP, Hall SJ, Maurer RJ. The nuts and bolts of core-hole constrained ab initiosimulation for K-shell x-ray photoemission and absorption spectra. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2021; 33. [PMID: 33682682 DOI: 10.1088/1361-648x/abdf00] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2020] [Accepted: 01/22/2021] [Indexed: 05/13/2023]
Abstract
X-ray photoemission (XPS) and near edge x-ray absorption fine structure (NEXAFS) spectroscopy play an important role in investigating the structure and electronic structure of materials and surfaces.Ab initiosimulations provide crucial support for the interpretation of complex spectra containing overlapping signatures. Approximate core-hole simulation methods based on density functional theory (DFT) such as the delta-self-consistent-field (ΔSCF) method or the transition potential (TP) method are widely used to predictK-shell XPS and NEXAFS signatures of organic molecules, inorganic materials and metal-organic interfaces at reliable accuracy and affordable computational cost. We present the numerical and technical details of our variants of the ΔSCF and TP method (coined ΔIP-TP) to simulate XPS and NEXAFS transitions. Using exemplary molecules in gas-phase, in bulk crystals, and at metal-organic interfaces, we systematically assess how practical simulation choices affect the stability and accuracy of simulations. These include the choice of exchange-correlation functional, basis set, the method of core-hole localization, and the use of periodic boundary conditions (PBC). We particularly focus on the choice of aperiodic or periodic description of systems and how spurious charge effects in periodic calculations affect the simulation outcomes. For the benefit of practitioners in the field, we discuss sensible default choices, limitations of the methods, and future prospects.
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Affiliation(s)
- Benedikt P Klein
- Department of Chemistry, University of Warwick, Gibbet Hill Rd, Coventry, CV4 7AL, United Kingdom
- Diamond Light Source, Harwell Science and Innovation Campus, Didcot, OX11 0DE, United Kingdom
| | - Samuel J Hall
- Department of Chemistry, University of Warwick, Gibbet Hill Rd, Coventry, CV4 7AL, United Kingdom
- MAS CDT, Senate House, University of Warwick, Gibbet Hill Rd, Coventry, CV4 7AL, United Kingdom
| | - Reinhard J Maurer
- Department of Chemistry, University of Warwick, Gibbet Hill Rd, Coventry, CV4 7AL, United Kingdom
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19
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Nava M, Makri N. Quantum-Classical Path Integral Simulation of Excess Proton Dynamics in a Water Dimer Embedded in the Gramicidin Channel. J Chem Theory Comput 2021; 17:627-638. [PMID: 33494606 DOI: 10.1021/acs.jctc.0c01012] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We use the quantum-classical path integral (QCPI) methodology to investigate the relaxation dynamics of an excess proton that has been inserted in a water dimer embedded in the gramicidin A channel at room temperature. We obtain one-dimensional potential slices for the quantum degree of freedom through a proper transformation to internal coordinates. Our results indicate that the proton transfer is driven by the oscillation of the oxygen pair, and that the transfer occurs primarily at single-well or nearby low-barrier configurations. Yet, we find that tunneling and zero-point energy lead to a significant acceleration of the proton transfer dynamics.
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Affiliation(s)
- Marco Nava
- Department of Chemistry, University of Illinois, 505 South Mathews Avenue, Urbana, Illinois 61801, United States
| | - Nancy Makri
- Department of Chemistry, University of Illinois, 505 South Mathews Avenue, Urbana, Illinois 61801, United States
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20
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Liquid water contains the building blocks of diverse ice phases. Nat Commun 2020; 11:5757. [PMID: 33188195 PMCID: PMC7666157 DOI: 10.1038/s41467-020-19606-y] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Accepted: 10/23/2020] [Indexed: 11/24/2022] Open
Abstract
Water molecules can arrange into a liquid with complex hydrogen-bond networks and at least 17 experimentally confirmed ice phases with enormous structural diversity. It remains a puzzle how or whether this multitude of arrangements in different phases of water are related. Here we investigate the structural similarities between liquid water and a comprehensive set of 54 ice phases in simulations, by directly comparing their local environments using general atomic descriptors, and also by demonstrating that a machine-learning potential trained on liquid water alone can predict the densities, lattice energies, and vibrational properties of the ices. The finding that the local environments characterising the different ice phases are found in water sheds light on the phase behavior of water, and rationalizes the transferability of water models between different phases. Molecular understanding of water is challenging due to the structural complexity of liquid water and the large number of ice phases. Here the authors use a machine-learning potential trained on liquid water to demonstrate the structural similarity of liquid water and that of 54 real and hypothetical ice phases.
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21
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Zhou S, Wang L. Quantum effects and 1H NMR chemical shifts of a bifurcated short hydrogen bond. J Chem Phys 2020; 153:114301. [PMID: 32962368 DOI: 10.1063/5.0024734] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
The monoprotonated compound N,N',N''-tris(p-tolyl)azacalix[3](2,6)pyridine (TAPH) contains an intramolecular hydrogen bond that is formed from three N atoms in its cavity. Constrained by the macrocyclic molecular structure, the separations between the N atoms in this bifurcated hydrogen bond are about 2.6 Å, considerably shorter than those typically observed for hydrogen bonded systems in the condensed phases. As such, TAPH exhibits significantly elongated N-H lengths in its hydrogen bond and a downfield 1H NMR chemical shift of 22.1 ppm. In this work, we carry out ab initio molecular dynamics and ab initio path integral molecular dynamics simulations of TAPH in the acetonitrile solution to reveal the geometry and proton sharing conditions of the bifurcated short hydrogen bond and uncover how the interplay of electronic and nuclear quantum effects gives rise to its far downfield 1H chemical shift. Taking a linear short hydrogen bond as a reference, we demonstrate the distinct features of competing quantum effects and electronic shielding effects in the bifurcated hydrogen bond of TAPH. We further use the degree of deshielding on the proton as a measure of the hydrogen bonding interactions and evaluate the strength of the bifurcated short hydrogen bond as compared to its linear counterpart.
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Affiliation(s)
- Shengmin Zhou
- Department of Chemistry and Chemical Biology, Institute for Quantitative Biomedicine, Rutgers University, Piscataway, New Jersey 08854, USA
| | - Lu Wang
- Department of Chemistry and Chemical Biology, Institute for Quantitative Biomedicine, Rutgers University, Piscataway, New Jersey 08854, USA
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22
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Schaack S, Depondt P, Huppert S, Finocchi F. Quantum driven proton diffusion in brucite-like minerals under high pressure. Sci Rep 2020; 10:8123. [PMID: 32415256 PMCID: PMC7229208 DOI: 10.1038/s41598-020-64813-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Accepted: 02/03/2020] [Indexed: 12/02/2022] Open
Abstract
Transport of hydrogen in hydrous minerals under high pressure is a key step for the water cycle within the Earth interior. Brucite Mg(OH)2 is one of the simplest minerals containing hydroxyl groups and is believed to decompose under the geological condition of the deep Earth's mantle. In the present study, we investigate the proton diffusion in brucite under high pressure, which results from a complex interplay between two processes: the O-H reorientations motion around the c axis and O-H covalent bond dissociations. First-principle path-integral molecular dynamics simulations reveal that the increasing pressure tends to lock the former motion, while, in contrast, it activates the latter which is mainly triggered by nuclear quantum effects. These two competing effects therefore give rise to a pressure sweet spot for proton diffusion within the mineral. In brucite Mg(OH)2, proton diffusion reaches a maximum for pressures close to 70GPa, while the structurally similar portlandite Ca(OH)2 never shows proton diffusion within the pressure range and time scale that we explored. We analyze the different behavior of brucite and portlandite, which might constitute two prototypes for other minerals with same structure.
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Affiliation(s)
- Sofiane Schaack
- Institut des NanoSciences de Paris (INSP), Sorbonne Université, CNRS-UMR 7588, 75005, Paris, France
| | - Philippe Depondt
- Institut des NanoSciences de Paris (INSP), Sorbonne Université, CNRS-UMR 7588, 75005, Paris, France.
| | - Simon Huppert
- Institut des NanoSciences de Paris (INSP), Sorbonne Université, CNRS-UMR 7588, 75005, Paris, France
| | - Fabio Finocchi
- Institut des NanoSciences de Paris (INSP), Sorbonne Université, CNRS-UMR 7588, 75005, Paris, France
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23
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Tao X, Shushkov P, Miller TF. Microcanonical rates from ring-polymer molecular dynamics: Direct-shooting, stationary-phase, and maximum-entropy approaches. J Chem Phys 2020; 152:124117. [DOI: 10.1063/1.5144307] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Affiliation(s)
- Xuecheng Tao
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA
| | - Philip Shushkov
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA
| | - Thomas F. Miller
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA
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24
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Multistate Reactive Molecular Dynamics Simulations of Proton Diffusion in Water Clusters and in the Bulk. J Phys Chem B 2019; 123:9846-9861. [PMID: 31647873 DOI: 10.1021/acs.jpcb.9b03258] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
The molecular mechanics with proton transfer (MMPT) force field is combined with multistate adiabatic reactive molecular dynamics (MS-ARMD) to describe proton transport in the condensed phase. Parametrization for small protonated water clusters based on electronic structure calculations at the MP2/6-311+G(2d,2p) level of theory and refinement by comparing with infrared spectra for a protonated water tetramer yields a force field which faithfully describes the minimum energy structures of small protonated water clusters. In protonated water clusters up to (H2O)100H+, the proton hopping rate is around 100 hops/ns. This rate converges for 21 ≤ n ≤ 31, and no further speedup in bulk water is found. This indicates that bulklike behavior requires the solvation of a Zundel motif by ∼25 water molecules, which corresponds to the second solvation sphere. For smaller cluster sizes, the number of available states (i.e., the number of proton acceptors) is too small and slows down proton-transfer rates. The cluster simulations confirm that the excess proton is typically located on the surface. The free-energy surface as a function of the weights of the two lowest states and a configurational parameter suggests that the "special pair" plays a central role in rapid proton transport. The barriers between this minimum-energy structure and the Zundel and Eigen minima are sufficiently low (∼1 kcal/mol, consistent with recent experiments and commensurate with a hopping rate of ∼100/ns or 1 every 10 ps), leading to a highly dynamic environment. These findings are also consistent with recent experiments which find that Zundel-type hydration geometries are prevalent in bulk water.
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25
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Affiliation(s)
- Wei Fang
- School of Physics and Collaborative Innovation Centre of Quantum Matter, Peking University, Beijing, People's Republic of China
- Thomas Young Centre, London Centre for Nanotechnology, and Department of Physics and Astronomy, University College London, London, UK
- Laboratory of Physical Chemistry, ETH Zurich, Zurich, Switzerland
| | - Ji Chen
- Department of Electronic Structure Theory, Max Plank Institute for Solid State Research, Stuttgart, Germany
| | - Yexin Feng
- School of Physics and Electronics, Hunan University, Changsha, People's Republic of China
| | - Xin-Zheng Li
- School of Physics and Collaborative Innovation Centre of Quantum Matter, Peking University, Beijing, People's Republic of China
- State Key Laboratory for Artificial Microstructure and Mesoscopic Physics, Peking University, Beijing, People's Republic of China
| | - Angelos Michaelides
- Thomas Young Centre, London Centre for Nanotechnology, and Department of Physics and Astronomy, University College London, London, UK
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26
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Michelitsch GS, Reuter K. Efficient simulation of near-edge x-ray absorption fine structure (NEXAFS) in density-functional theory: Comparison of core-level constraining approaches. J Chem Phys 2019; 150:074104. [DOI: 10.1063/1.5083618] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Georg S. Michelitsch
- Chair for Theoretical Chemistry and Catalysis Research Center, Technische Universität München, Lichtenbergstr. 4, D-85748 Garching, Germany
| | - Karsten Reuter
- Chair for Theoretical Chemistry and Catalysis Research Center, Technische Universität München, Lichtenbergstr. 4, D-85748 Garching, Germany
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27
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Litman Y, Richardson JO, Kumagai T, Rossi M. Elucidating the Nuclear Quantum Dynamics of Intramolecular Double Hydrogen Transfer in Porphycene. J Am Chem Soc 2019; 141:2526-2534. [PMID: 30648386 PMCID: PMC6728096 DOI: 10.1021/jacs.8b12471] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
![]()
We address the double hydrogen transfer
(DHT) dynamics of the porphycene molecule, a complex paradigmatic
system in which the making and breaking of H-bonds in a highly anharmonic
potential energy surface require a quantum mechanical treatment not
only of the electrons but also of the nuclei. We combine density functional
theory calculations, employing hybrid functionals and van der Waals
corrections, with recently proposed and optimized path-integral ring-polymer
methods for the approximation of quantum vibrational spectra and reaction
rates. Our full-dimensional ring-polymer instanton simulations show
that below 100 K the concerted DHT tunneling pathway dominates but
between 100 and 300 K there is a competition between concerted and
stepwise pathways when nuclear quantum effects are included. We obtain
ground-state reaction rates of 2.19 × 1011 s–1 at 150 K and 0.63 × 1011 s–1 at
100 K, in good agreement with experiment. We also reproduce the puzzling
N–H stretching band of porphycene with very good accuracy from
thermostated ring-polymer molecular dynamics simulations. The position
and line shape of this peak, centered at around 2600 cm–1 and spanning 750 cm–1, stem from a combination
of very strong H-bonds, the coupling to low-frequency modes, and the
access to cis-like isomeric conformations, which
cannot be appropriately captured with classical-nuclei dynamics. These
results verify the appropriateness of our general theoretical approach
and provide a framework for a deeper physical understanding of hydrogen
transfer dynamics in complex systems.
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Affiliation(s)
- Yair Litman
- Theory Department , Fritz Haber Institute of the Max Planck Society , Faradayweg 4-6 , 14195 Berlin , Germany
| | | | - Takashi Kumagai
- Physical Chemistry Department , Fritz Haber Institute of the Max Planck Society , Faradayweg 4-6 , 14195 Berlin , Germany
| | - Mariana Rossi
- Theory Department , Fritz Haber Institute of the Max Planck Society , Faradayweg 4-6 , 14195 Berlin , Germany
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28
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Zhang N, Huo J, Yang B, Ruan X, Zhang X, Bao J, Qi W, He G. Understanding of imidazolium group hydration and polymer structure for hydroxide anion conduction in hydrated imidazolium-g-PPO membrane by molecular dynamics simulations. Chem Eng Sci 2018. [DOI: 10.1016/j.ces.2018.08.051] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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29
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Feng Y, Zhao Y, Zhou WK, Li Q, Saidi WA, Zhao Q, Li XZ. Proton Migration in Hybrid Lead Iodide Perovskites: From Classical Hopping to Deep Quantum Tunneling. J Phys Chem Lett 2018; 9:6536-6543. [PMID: 30358406 DOI: 10.1021/acs.jpclett.8b02929] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
The organic-inorganic halide perovskites (OIHPs) have shown enormous potential for solar cells, while problems like the current-voltage hysteresis and the long-term instability have seriously hindered their applications. Ion migrations are believed to be relevant. But the atomistic details still remain unclear. Here we study the migrations of ions in CH3NH3PbI3 (MAPbI3) at varying temperatures ( T's), using combined experimental and first-principle theoretical methods. Classical hopping of the iodide ions is the main migration mechanism at moderate T's. Below ∼270 K, the kinetic constant for ionic migration still shows an Arrenhius dependency, but the much lower activation energy is attributed to the migration of H+. A gradual classical-to-quantum transition takes place between ∼140 and ∼80 K. Below ∼80 K, the kinetic constant becomes T-independent, suggesting that deep quantum tunneling of H+ takes over. This study gives direct experimental evidence for the migrations of H+s in MAPbI3 and confirms their quantum nature.
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Affiliation(s)
- Yexin Feng
- State Key Laboratory for Mesoscopic Physics and School of Physics , Peking University , Beijing 100871 , P. R. China
- School of Physics and Electronics , Hunan University , Changsha 410082 , P. R. China
| | - Yicheng Zhao
- State Key Laboratory for Mesoscopic Physics and School of Physics , Peking University , Beijing 100871 , P. R. China
| | - Wen-Ke Zhou
- State Key Laboratory for Mesoscopic Physics and School of Physics , Peking University , Beijing 100871 , P. R. China
| | - Qi Li
- State Key Laboratory for Mesoscopic Physics and School of Physics , Peking University , Beijing 100871 , P. R. China
| | - Wissam A Saidi
- Department of Mechanical Engineering and Materials Science , University of Pittsburgh , Pittsburgh , Pennsylvania 15261 , United States
| | - Qing Zhao
- State Key Laboratory for Mesoscopic Physics and School of Physics , Peking University , Beijing 100871 , P. R. China
- Collaborative Innovation Center of Quantum Matter , Peking University , Beijing 100871 , P. R. China
| | - Xin-Zheng Li
- State Key Laboratory for Mesoscopic Physics and School of Physics , Peking University , Beijing 100871 , P. R. China
- Collaborative Innovation Center of Quantum Matter , Peking University , Beijing 100871 , P. R. China
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30
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Hellström M, Ceriotti M, Behler J. Nuclear Quantum Effects in Sodium Hydroxide Solutions from Neural Network Molecular Dynamics Simulations. J Phys Chem B 2018; 122:10158-10171. [DOI: 10.1021/acs.jpcb.8b06433] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Matti Hellström
- Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, 44780 Bochum, Germany
- Universität Göttingen, Institut für Physikalische Chemie, Theoretische Chemie, Tammannstr. 6, 37077 Göttingen, Germany
| | - Michele Ceriotti
- Laboratory of Computational Science and Modeling, Institute of Materials, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
| | - Jörg Behler
- Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, 44780 Bochum, Germany
- Universität Göttingen, Institut für Physikalische Chemie, Theoretische Chemie, Tammannstr. 6, 37077 Göttingen, Germany
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31
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Sirkin YAP, Hassanali A, Scherlis DA. One-Dimensional Confinement Inhibits Water Dissociation in Carbon Nanotubes. J Phys Chem Lett 2018; 9:5029-5033. [PMID: 30113846 DOI: 10.1021/acs.jpclett.8b02183] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
The effect of nanoconfinement on the self-dissociation of water constitutes an open problem whose elucidation poses a serious challenge to experiments and simulations alike. In slit pores of width ≈1 nm, recent first-principles calculations have predicted that the dissociation constant of H2O increases by almost 2 orders of magnitude [ Muñoz-Santiburcio and Marx, Phys. Rev. Lett. 2017 , 119 , 056002 ]. In the present study, quantum mechanics-molecular mechanics simulations are employed to compute the dissociation free-energy profile of water in a (6,6) carbon nanotube. According to our results, the equilibrium constant Kw drops by 3 orders of magnitude with respect to the bulk phase value, at variance with the trend predicted for confinement in two dimensions. The higher barrier to dissociation can be ascribed to the undercoordination of the hydroxide and hydronium ions in the nanotube and underscores that chemical reactivity does not exhibit a monotonic behavior with respect to pore size but may vary substantially with the characteristic length scale and dimensionality of the confining media.
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Affiliation(s)
- Yamila A Perez Sirkin
- Departamento de Química Inorgánica, Analítica y Química Física/INQUIMAE, Facultad de Ciencias Exactas y Naturales , Universidad de Buenos Aires, Ciudad Universitaria , Buenos Aires C1428EHA , Argentina
| | - Ali Hassanali
- Condensed Matter and Statistical Physics , International Centre for Theoretical Physics , I-34151 Trieste , Italy
| | - Damián A Scherlis
- Departamento de Química Inorgánica, Analítica y Química Física/INQUIMAE, Facultad de Ciencias Exactas y Naturales , Universidad de Buenos Aires, Ciudad Universitaria , Buenos Aires C1428EHA , Argentina
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32
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Litman Y, Donadio D, Ceriotti M, Rossi M. Decisive role of nuclear quantum effects on surface mediated water dissociation at finite temperature. J Chem Phys 2018; 148:102320. [PMID: 29544260 DOI: 10.1063/1.5002537] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
Water molecules adsorbed on inorganic substrates play an important role in several technological applications. In the presence of light atoms in adsorbates, nuclear quantum effects (NQEs) influence the structural stability and the dynamical properties of these systems. In this work, we explore the impact of NQEs on the dissociation of water wires on stepped Pt(221) surfaces. By performing ab initio molecular dynamics simulations with van der Waals corrected density functional theory, we note that several competing minima for both intact and dissociated structures are accessible at finite temperatures, making it important to assess whether harmonic estimates of the quantum free energy are sufficient to determine the relative stability of the different states. We thus perform ab initio path integral molecular dynamics (PIMD) in order to calculate these contributions taking into account the conformational entropy and anharmonicities at finite temperatures. We propose that when adsorption is weak and NQEs on the substrate are negligible, PIMD simulations can be performed through a simple partition of the system, resulting in considerable computational savings. We then calculate the full contribution of NQEs to the free energies, including also anharmonic terms. We find that they result in an increase of up to 20% of the quantum contribution to the dissociation free energy compared with the harmonic estimates. We also find that the dissociation process has a negligible contribution from tunneling but is dominated by zero point energies, which can enhance the rate of dissociation by three orders of magnitude. Finally we highlight how both temperature and NQEs indirectly impact dipoles and the redistribution of electron density, causing work function changes of up to 0.4 eV with respect to static estimates. This quantitative determination of the change in the work function provides a possible approach to determine experimentally the most stable configurations of water oligomers on the stepped surfaces.
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Affiliation(s)
- Yair Litman
- Fritz Haber Institute of the Max Planck Society, Faradayweg 4-6, 14195 Berlin, Germany
| | - Davide Donadio
- Department of Chemistry, University of California Davis, One Shields Ave., Davis, California 95616, USA
| | - Michele Ceriotti
- Laboratory of Computational Science and Modelling, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
| | - Mariana Rossi
- Fritz Haber Institute of the Max Planck Society, Faradayweg 4-6, 14195 Berlin, Germany
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33
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Cheng B, Paxton AT, Ceriotti M. Hydrogen Diffusion and Trapping in α-Iron: The Role of Quantum and Anharmonic Fluctuations. PHYSICAL REVIEW LETTERS 2018; 120:225901. [PMID: 29906144 DOI: 10.1103/physrevlett.120.225901] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2018] [Revised: 04/09/2018] [Indexed: 06/08/2023]
Abstract
We investigate the thermodynamics and kinetics of a hydrogen interstitial in magnetic α-iron, taking account of the quantum fluctuations of the proton as well as the anharmonicities of lattice vibrations and hydrogen hopping. We show that the diffusivity of hydrogen in the lattice of bcc iron deviates strongly from an Arrhenius behavior at and below room temperature. We compare a quantum transition state theory to explicit ring polymer molecular dynamics in the calculation of diffusivity. We then address the trapping of hydrogen by a vacancy as a prototype lattice defect. By a sequence of steps in a thought experiment, each involving a thermodynamic integration, we are able to separate out the binding free energy of a proton to a defect into harmonic and anharmonic, and classical and quantum contributions. We find that about 30% of a typical binding free energy of hydrogen to a lattice defect in iron is accounted for by finite temperature effects, and about half of these arise from quantum proton fluctuations. This has huge implications for the comparison between thermal desorption and permeation experiments and standard electronic structure theory. The implications are even greater for the interpretation of muon spin resonance experiments.
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Affiliation(s)
- Bingqing Cheng
- Laboratory of Computational Science and Modeling, Institute of Materials, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
| | - Anthony T Paxton
- Department of Physics, King's College London. Strand, London WC2R 2LS, United Kingdom
| | - Michele Ceriotti
- Laboratory of Computational Science and Modeling, Institute of Materials, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
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34
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Futera Z, English NJ. Pressure dependence of structural properties of ice VII: An ab initio molecular-dynamics study. J Chem Phys 2018; 148:204505. [DOI: 10.1063/1.5022175] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Zdenek Futera
- School of Chemical and Bioprocess Engineering, University College Dublin, Belfield, Dublin 4, Ireland
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
| | - Niall J. English
- School of Chemical and Bioprocess Engineering, University College Dublin, Belfield, Dublin 4, Ireland
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35
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Rossi M, Kapil V, Ceriotti M. Fine tuning classical and quantum molecular dynamics using a generalized Langevin equation. J Chem Phys 2018; 148:102301. [DOI: 10.1063/1.4990536] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Mariana Rossi
- Laboratory of Computational Science and Modelling, Institute of Materials, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
| | - Venkat Kapil
- Laboratory of Computational Science and Modelling, Institute of Materials, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
| | - Michele Ceriotti
- Laboratory of Computational Science and Modelling, Institute of Materials, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
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36
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37
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Li C, Requist R, Gross EKU. Density functional theory of electron transfer beyond the Born-Oppenheimer approximation: Case study of LiF. J Chem Phys 2018; 148:084110. [DOI: 10.1063/1.5011663] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Chen Li
- Max Planck Institute of Microstructure Physics, Weinberg 2, 06120 Halle, Germany
| | - Ryan Requist
- Max Planck Institute of Microstructure Physics, Weinberg 2, 06120 Halle, Germany
| | - E. K. U. Gross
- Max Planck Institute of Microstructure Physics, Weinberg 2, 06120 Halle, Germany
- Fritz Haber Center for Molecular Dynamics, Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel
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38
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Dong D, Zhang W, van Duin ACT, Bedrov D. Grotthuss versus Vehicular Transport of Hydroxide in Anion-Exchange Membranes: Insight from Combined Reactive and Nonreactive Molecular Simulations. J Phys Chem Lett 2018; 9:825-829. [PMID: 29390610 DOI: 10.1021/acs.jpclett.8b00004] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Combined reactive and nonreactive polarizable molecular dynamics simulations were used to probe the transport mechanisms of hydroxide in hydrated anion-exchange membranes (AEMs) composed of poly(p-phenylene oxide) functionalized with the quaternary ammonium cationic groups. The direct mapping of membrane morphologies between two models allowed us to investigate the contributions of vehicular and Grotthuss mechanisms in hydroxide motion and correlate these mechanisms with the details of local structure. In AEMs with nonblocky polymer structure, where anion transport occurs through narrow (subnanometer size) percolating water channels, simulations indicate the importance of the Grotthuss mechanism. In nonreactive simulations, in order to diffuse through bottlenecks in the water channels, the hydroxide anion has to lose part of its hydration structure, therefore creating a large kinetic barrier for such events. However, when the Grotthuss mechanism is involved, the hydroxide transport through these bottlenecks can easily occur without loss of anion hydration structure and with a much lower barrier.
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Affiliation(s)
- Dengpan Dong
- Department of Materials Science & Engineering, University of Utah , 122 South Central Campus Drive, Room 304, Salt Lake City, Utah 84112, United States
| | - Weiwei Zhang
- Department of Mechanical and Nuclear Engineering, Pennsylvania State University , University Park, Pennsylvania 16802, United States
| | - Adri C T van Duin
- Department of Mechanical and Nuclear Engineering, Pennsylvania State University , University Park, Pennsylvania 16802, United States
| | - Dmitry Bedrov
- Department of Materials Science & Engineering, University of Utah , 122 South Central Campus Drive, Room 304, Salt Lake City, Utah 84112, United States
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39
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Gasparotto P, Meißner RH, Ceriotti M. Recognizing Local and Global Structural Motifs at the Atomic Scale. J Chem Theory Comput 2018; 14:486-498. [DOI: 10.1021/acs.jctc.7b00993] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Piero Gasparotto
- Laboratory of Computational
Science and Modeling, Institute of Materials, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
| | - Robert Horst Meißner
- Laboratory of Computational
Science and Modeling, Institute of Materials, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
| | - Michele Ceriotti
- Laboratory of Computational
Science and Modeling, Institute of Materials, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
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40
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Dong D, Wei X, Hooper JB, Pan H, Bedrov D. Role of cationic groups on structural and dynamical correlations in hydrated quaternary ammonium-functionalized poly(p-phenylene oxide)-based anion exchange membranes. Phys Chem Chem Phys 2018; 20:19350-19362. [DOI: 10.1039/c8cp02211a] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Extensive atomistic molecular dynamics simulations were conducted using a polarizable force field to study hydroxide and water dynamics in anion exchange membranes.
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Affiliation(s)
- Dengpan Dong
- Department of Materials Science & Engineering
- University of Utah
- Salt Lake City
- USA
| | - Xiaoyu Wei
- Department of Materials Science & Engineering
- University of Utah
- Salt Lake City
- USA
| | - Justin B. Hooper
- Department of Materials Science & Engineering
- University of Utah
- Salt Lake City
- USA
| | - Hongchao Pan
- Department of Materials Science & Engineering
- University of Utah
- Salt Lake City
- USA
| | - Dmitry Bedrov
- Department of Materials Science & Engineering
- University of Utah
- Salt Lake City
- USA
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41
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Affiliation(s)
- Timothy J. H. Hele
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA
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42
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Pinto de Magalhães H, Brennwald MS, Kipfer R. Diverging effects of isotopic fractionation upon molecular diffusion of noble gases in water: mechanistic insights through ab initio molecular dynamics simulations. ENVIRONMENTAL SCIENCE. PROCESSES & IMPACTS 2017; 19:405-413. [PMID: 28186521 DOI: 10.1039/c6em00614k] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Atmospheric noble gases are routinely used as natural tracers to analyze gas transfer processes in aquatic systems. Their isotopic ratios can be employed to discriminate between different physical transport mechanisms by comparison to the unfractionated atmospheric isotope composition. In many applications of aquatic systems molecular diffusion was thought to cause a mass dependent fractionation of noble gases and their isotopes according to the square root ratio of their masses. However, recent experiments focusing on isotopic fractionation within a single element challenged this broadly accepted assumption. The determined fractionation factors of Ne, Ar, Kr and Xe isotopes revealed that only Ar follows the prediction of the so-called square root relation, whereas within the Ne, Kr and Xe elements no mass-dependence was found. The reason for this unexpected divergence of Ar is not yet understood. The aim of our computational exercise is to establish the molecular-resolved mechanisms behind molecular diffusion of noble gases in water. We make the hypothesis that weak intermolecular interactions are relevant for the dynamical properties of noble gases dissolved in water. Therefore, we used ab initio molecular dynamics to explicitly account for the electronic degrees of freedom. Depending on the size and polarizability of the hydrophobic particles such as noble gases, their motion in dense and polar liquids like water is subject to different diffusive regimes: the inter-cavity hopping mechanism of small particles (He, Ne) breaks down if a critical particle size achieved. For the case of large particles (Kr, Xe), the motion through the water solvent is governed by mass-independent viscous friction leading to hydrodynamical diffusion. Finally, Ar falls in between the two diffusive regimes, where particle dispersion is propagated at the molecular collision time scale of the surrounding water molecules.
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Affiliation(s)
- Halua Pinto de Magalhães
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, Department of Water Resources and Drinking Water, 8600 Duebendorf, Switzerland
| | - Matthias S Brennwald
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, Department of Water Resources and Drinking Water, 8600 Duebendorf, Switzerland
| | - Rolf Kipfer
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, Department of Water Resources and Drinking Water, 8600 Duebendorf, Switzerland and ETH Zurich, Institute of Biogeochemistry and Pollution Dynamics, 8092 Zurich, Switzerland and ETH Zurich, Institute of Geochemistry and Petrology, 8092 Zurich, Switzerland
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43
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Yu Q, Bowman JM. Ab Initio Potential for H3O+ → H+ + H2O: A Step to a Many-Body Representation of the Hydrated Proton? J Chem Theory Comput 2016; 12:5284-5292. [DOI: 10.1021/acs.jctc.6b00765] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Qi Yu
- Department of Chemistry and
Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
| | - Joel M. Bowman
- Department of Chemistry and
Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, United States
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