1
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Sepali C, Lafiosca P, Gómez S, Giovannini T, Cappelli C. Effective fully polarizable QM/MM approaches to compute Raman and Raman Optical Activity spectra in aqueous solution. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 305:123485. [PMID: 37827000 DOI: 10.1016/j.saa.2023.123485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Revised: 09/22/2023] [Accepted: 10/01/2023] [Indexed: 10/14/2023]
Abstract
Raman and Raman Optical Activity (ROA) signals are amply affected by solvent effects, especially in the presence of strongly solute-solvent interactions such as Hydrogen Bonding (HB). In this work, we extend the fully atomistic polarizable Quantum Mechanics/Molecular Mechanics approach, based on the Fluctuating Charges and Fluctuating Dipoles force field to the calculation of Raman and ROA spectra. Such an approach is able to accurately describe specific HB interactions, by also accounting for anisotropic contributions due to the inclusion of fluctuating dipoles. To highlight the potentiality of the novel approach, Raman and ROA spectra of L-Serine and L-Cysteine dissolved in aqueous solution are computed and compared both with alternative theoretical approaches and experimental measurements.
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Affiliation(s)
- Chiara Sepali
- Scuola Normale Superiore, Piazza dei Cavalieri, 7, Pisa, 56126, Italy
| | - Piero Lafiosca
- Scuola Normale Superiore, Piazza dei Cavalieri, 7, Pisa, 56126, Italy
| | - Sara Gómez
- Scuola Normale Superiore, Piazza dei Cavalieri, 7, Pisa, 56126, Italy
| | | | - Chiara Cappelli
- Scuola Normale Superiore, Piazza dei Cavalieri, 7, Pisa, 56126, Italy.
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2
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Electronic Circular Dichroism‐Circularly Polarized Raman (eCP‐Raman): A New Form of Chiral Raman Spectroscopy. Chemistry 2022; 28:e202104302. [DOI: 10.1002/chem.202104302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Indexed: 11/07/2022]
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3
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Mattiat J, Luber S. Recent Progress in the Simulation of Chiral Systems with Real Time Propagation Methods. Helv Chim Acta 2021. [DOI: 10.1002/hlca.202100154] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Johann Mattiat
- Department of Chemistry University of Zurich Winterthurerstrasse 190 CH-8057 Zurich Switzerland
| | - Sandra Luber
- Department of Chemistry University of Zurich Winterthurerstrasse 190 CH-8057 Zurich Switzerland
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4
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Li G, Alshalalfeh M, Yang Y, Cheeseman JR, Bouř P, Xu Y. Can One Measure Resonance Raman Optical Activity? Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202109345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Guojie Li
- Department of Chemistry University of Alberta Edmonton Alberta T6G 2G2 Canada
| | - Mutasem Alshalalfeh
- Department of Chemistry University of Alberta Edmonton Alberta T6G 2G2 Canada
| | - Yanqing Yang
- Department of Chemistry University of Alberta Edmonton Alberta T6G 2G2 Canada
| | - James R. Cheeseman
- Gaussian Inc. 340 Quinnipiac St., Bldg. 40 Wallingford CT 06492-4050 USA
| | - Petr Bouř
- Institute of Organic Chemistry and Biochemistry Flemingovo náměstí 2 16610 Prague Czech Republic
| | - Yunjie Xu
- Department of Chemistry University of Alberta Edmonton Alberta T6G 2G2 Canada
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5
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Machalska E, Zajac G, Wierzba AJ, Kapitán J, Andruniów T, Spiegel M, Gryko D, Bouř P, Baranska M. Recognition of the True and False Resonance Raman Optical Activity. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202107600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Ewa Machalska
- Faculty of Chemistry Jagiellonian University Gronostajowa 2 30-387 Krakow Poland
- Jagiellonian Centre for Experimental Therapeutics (JCET) Jagiellonian University Bobrzynskiego 14 30-348 Krakow Poland
| | - Grzegorz Zajac
- Jagiellonian Centre for Experimental Therapeutics (JCET) Jagiellonian University Bobrzynskiego 14 30-348 Krakow Poland
- Institute of Organic Chemistry and Biochemistry Academy of Sciences Flemingovo náměstí 2 16610 Prague Czech Republic
| | - Aleksandra J. Wierzba
- Institute of Organic Chemistry Polish Academy of Sciences Kasprzaka 44/52 01-224 Warsaw Poland
| | - Josef Kapitán
- Department of Optics Palacký University Olomouc 17. listopadu 12 77146 Olomouc Czech Republic
| | - Tadeusz Andruniów
- Department of Chemistry Wroclaw University of Science and Technology Wyb. Wyspianskiego 27 50-370 Wroclaw Poland
| | - Maciej Spiegel
- Department of Pharmacognosy and Herbal Medicine Wroclaw Medical University Borowska 211A 50-556 Wroclaw Poland
| | - Dorota Gryko
- Institute of Organic Chemistry Polish Academy of Sciences Kasprzaka 44/52 01-224 Warsaw Poland
| | - Petr Bouř
- Institute of Organic Chemistry and Biochemistry Academy of Sciences Flemingovo náměstí 2 16610 Prague Czech Republic
| | - Malgorzata Baranska
- Faculty of Chemistry Jagiellonian University Gronostajowa 2 30-387 Krakow Poland
- Jagiellonian Centre for Experimental Therapeutics (JCET) Jagiellonian University Bobrzynskiego 14 30-348 Krakow Poland
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6
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Machalska E, Zajac G, Wierzba AJ, Kapitán J, Andruniów T, Spiegel M, Gryko D, Bouř P, Baranska M. Recognition of the True and False Resonance Raman Optical Activity. Angew Chem Int Ed Engl 2021; 60:21205-21210. [PMID: 34216087 PMCID: PMC8519086 DOI: 10.1002/anie.202107600] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 07/01/2021] [Indexed: 12/16/2022]
Abstract
Resonance Raman optical activity (RROA) possesses all aspects of a sensitive tool for molecular detection, but its measurement remains challenging. We demonstrate that reliable recording of RROA of chiral colorful compounds is possible, but only after considering the effect of the electronic circular dichroism (ECD) on the ROA spectra induced by the dissolved chiral compound. We show RROA for a number of model vitamin B12 derivatives that are chemically similar but exhibit distinctively different spectroscopic behavior. The ECD/ROA effect is proportional to the concentration and dependent on the optical pathlength of the light propagating through the sample. It can severely alter relative band intensities and signs in the natural RROA spectra. The spectra analyses are supported by computational modeling based on density functional theory. Neglecting the ECD effect during ROA measurement can lead to misinterpretation of the recorded spectra and erroneous conclusions about the molecular structure.
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Affiliation(s)
- Ewa Machalska
- Faculty of ChemistryJagiellonian UniversityGronostajowa 230-387KrakowPoland
- Jagiellonian Centre for Experimental Therapeutics (JCET)Jagiellonian UniversityBobrzynskiego 1430-348KrakowPoland
| | - Grzegorz Zajac
- Jagiellonian Centre for Experimental Therapeutics (JCET)Jagiellonian UniversityBobrzynskiego 1430-348KrakowPoland
- Institute of Organic Chemistry and BiochemistryAcademy of SciencesFlemingovo náměstí 216610PragueCzech Republic
| | - Aleksandra J. Wierzba
- Institute of Organic ChemistryPolish Academy of SciencesKasprzaka 44/5201-224WarsawPoland
| | - Josef Kapitán
- Department of OpticsPalacký University Olomouc17. listopadu 1277146OlomoucCzech Republic
| | - Tadeusz Andruniów
- Department of ChemistryWroclaw University of Science and TechnologyWyb. Wyspianskiego 2750-370WroclawPoland
| | - Maciej Spiegel
- Department of Pharmacognosy and Herbal MedicineWroclaw Medical UniversityBorowska 211A50-556WroclawPoland
| | - Dorota Gryko
- Institute of Organic ChemistryPolish Academy of SciencesKasprzaka 44/5201-224WarsawPoland
| | - Petr Bouř
- Institute of Organic Chemistry and BiochemistryAcademy of SciencesFlemingovo náměstí 216610PragueCzech Republic
| | - Malgorzata Baranska
- Faculty of ChemistryJagiellonian UniversityGronostajowa 230-387KrakowPoland
- Jagiellonian Centre for Experimental Therapeutics (JCET)Jagiellonian UniversityBobrzynskiego 1430-348KrakowPoland
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7
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Li G, Alshalalfeh M, Yang Y, Cheeseman JR, Bouř P, Xu Y. Can One Measure Resonance Raman Optical Activity? Angew Chem Int Ed Engl 2021; 60:22004-22009. [PMID: 34347923 DOI: 10.1002/anie.202109345] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Indexed: 11/10/2022]
Abstract
Resonance Raman optical activity (RROA) is commonly measured as the difference in intensity of Raman scattered right and left circularly polarized light, IR -IL , when a randomly polarized light is in resonance with a chiral molecule. Strong and sometimes mono-signate experimental RROA spectra of several chiral solutes were reported previously, although their signs and relative intensities could not be reproduced theoretically. By examining multiple light-matter interaction events which can occur simultaneously under resonance, we show that a new form of chiral Raman spectroscopy, eCP-Raman, a combination of electronic circular dichroism and circularly polarized Raman, prevails. By incorporating the finite-lifetime approach for resonance, the experimental patterns of the model chiral solutes are captured theoretically by eCP-Raman, without any RROA contribution. The results open opportunity for applications of eCP-Raman spectroscopy and for extracting true RROA experimentally.
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Affiliation(s)
- Guojie Li
- Department of Chemistry, University of Alberta, Edmonton, Alberta, T6G 2G2, Canada
| | - Mutasem Alshalalfeh
- Department of Chemistry, University of Alberta, Edmonton, Alberta, T6G 2G2, Canada
| | - Yanqing Yang
- Department of Chemistry, University of Alberta, Edmonton, Alberta, T6G 2G2, Canada
| | - James R Cheeseman
- Gaussian Inc., 340 Quinnipiac St., Bldg. 40, Wallingford, CT, 06492-4050, USA
| | - Petr Bouř
- Institute of Organic Chemistry and Biochemistry, Flemingovo náměstí 2, 16610, Prague, Czech Republic
| | - Yunjie Xu
- Department of Chemistry, University of Alberta, Edmonton, Alberta, T6G 2G2, Canada
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8
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Giovannini T, Egidi F, Cappelli C. Theory and algorithms for chiroptical properties and spectroscopies of aqueous systems. Phys Chem Chem Phys 2020; 22:22864-22879. [PMID: 33043930 DOI: 10.1039/d0cp04027d] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Chiroptical properties and spectroscopies are valuable tools to study chiral molecules and assign absolute configurations. The spectra that result from chiroptical measurements may be very rich and complex, and hide much of their information content. For this reason, the interplay between experiments and calculations is especially useful, provided that all relevant physico-chemical interactions that are present in the experimental sample are accurately modelled. The inherent difficulty associated to the calculation of chiral signals of systems in aqueous solutions requires the development of specific tools, able to account for the peculiarities of water-solute interactions, and especially its ability to form hydrogen bonds. In this perspective we discuss a multiscale approach, which we have developed and challenged to model the most used chiroptical techniques.
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Affiliation(s)
- Tommaso Giovannini
- Department of Chemistry, Norwegian University of Science and Technology (NTNU), 7491 Trondheim, Norway
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9
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Machalska E, Zajac G, Gruca A, Zobi F, Baranska M, Kaczor A. Resonance Raman Optical Activity Shows Unusual Structural Sensitivity for Systems in Resonance with Multiple Excited States: Vitamin B 12 Case. J Phys Chem Lett 2020; 11:5037-5043. [PMID: 32502349 PMCID: PMC7588133 DOI: 10.1021/acs.jpclett.0c01218] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
In this work, cobalamins with different upper axial substituents and a cobalamin derivative with a ring modification were studied using chiroptical spectroscopies, in particular resonance Raman optical activity (RROA), to shed light on the influence of structural modifications on RROA spectra in these strongly chiral systems in resonance with multiple excited states at 532 nm excitation. We have demonstrated that for these unique systems RROA possesses augmented structural specificity, surpassing resonance Raman spectroscopy and enabling at the same time measurement of cobalamins at fairy low concentrations of ∼10-5 mol dm-3. The enhanced structural specificity of RROA is a result of bisignate spectra due to resonance via more than one electronic state. The observation of increased structural capability of RROA for cobalamins opens a new perspective for studying chiral properties of other biological systems incorporating d-metal ions.
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Affiliation(s)
- Ewa Machalska
- Faculty
of Chemistry, Jagiellonian University, Gronostajowa 2, Krakow 30-387, Poland
- Jagiellonian
Centre for Experimental Therapeutics (JCET), Jagiellonian University, Bobrzynskiego 14, Krakow 30-348, Poland
| | - Grzegorz Zajac
- Jagiellonian
Centre for Experimental Therapeutics (JCET), Jagiellonian University, Bobrzynskiego 14, Krakow 30-348, Poland
| | - Anna Gruca
- Faculty
of Chemistry, Jagiellonian University, Gronostajowa 2, Krakow 30-387, Poland
- Jagiellonian
Centre for Experimental Therapeutics (JCET), Jagiellonian University, Bobrzynskiego 14, Krakow 30-348, Poland
| | - Fabio Zobi
- Department
of Chemistry, University of Fribourg, Chemin du Musée 9, 1700 Fribourg, Switzerland
| | - Malgorzata Baranska
- Faculty
of Chemistry, Jagiellonian University, Gronostajowa 2, Krakow 30-387, Poland
- Jagiellonian
Centre for Experimental Therapeutics (JCET), Jagiellonian University, Bobrzynskiego 14, Krakow 30-348, Poland
| | - Agnieszka Kaczor
- Faculty
of Chemistry, Jagiellonian University, Gronostajowa 2, Krakow 30-387, Poland
- Jagiellonian
Centre for Experimental Therapeutics (JCET), Jagiellonian University, Bobrzynskiego 14, Krakow 30-348, Poland
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10
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Abella L, Ludowieg HD, Autschbach J. Theoretical study of the Raman optical activity spectra of with M = Co, Rh. Chirality 2020; 32:741-752. [DOI: 10.1002/chir.23194] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2019] [Revised: 02/07/2020] [Accepted: 02/08/2020] [Indexed: 11/06/2022]
Affiliation(s)
- Laura Abella
- Department of Chemistry University at Buffalo, State University of New York Buffalo New York
| | - Herbert D. Ludowieg
- Department of Chemistry University at Buffalo, State University of New York Buffalo New York
| | - Jochen Autschbach
- Department of Chemistry University at Buffalo, State University of New York Buffalo New York
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11
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Polavarapu PL, Santoro E. Vibrational optical activity for structural characterization of natural products. Nat Prod Rep 2020; 37:1661-1699. [DOI: 10.1039/d0np00025f] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
This review presents the recent progress towards elucidating the structures of chiral natural products and applications using vibrational optical activity (VOA) spectroscopy.
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12
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Mattiat J, Luber S. Vibrational (resonance) Raman optical activity with real time time dependent density functional theory. J Chem Phys 2019; 151:234110. [DOI: 10.1063/1.5132294] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Affiliation(s)
- Johann Mattiat
- Department of Chemistry, University of Zurich, Zurich, Switzerland
| | - Sandra Luber
- Department of Chemistry, University of Zurich, Zurich, Switzerland
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13
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Li G, Kessler J, Cheramy J, Wu T, Poopari MR, Bouř P, Xu Y. Transfer and Amplification of Chirality Within the “Ring of Fire” Observed in Resonance Raman Optical Activity Experiments. Angew Chem Int Ed Engl 2019; 58:16495-16498. [DOI: 10.1002/anie.201909603] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Indexed: 12/14/2022]
Affiliation(s)
- Guojie Li
- Department of ChemistryUniversity of Alberta Edmonton Alberta T6G 2G2 Canada
| | - Jiří Kessler
- Institute of Organic Chemistry and Biochemistry Flemingovo náměstí 2 16610 Prague Czech Republic
| | - Joseph Cheramy
- Department of ChemistryUniversity of Alberta Edmonton Alberta T6G 2G2 Canada
| | - Tao Wu
- Institute of Organic Chemistry and Biochemistry Flemingovo náměstí 2 16610 Prague Czech Republic
| | | | - Petr Bouř
- Institute of Organic Chemistry and Biochemistry Flemingovo náměstí 2 16610 Prague Czech Republic
| | - Yunjie Xu
- Department of ChemistryUniversity of Alberta Edmonton Alberta T6G 2G2 Canada
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14
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Weymuth T. Resonance Effects in the Raman Optical Activity Spectrum of [Rh(en) 3] 3. J Phys Chem A 2019; 123:9357-9370. [PMID: 31574220 DOI: 10.1021/acs.jpca.9b06968] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Raman optical activity spectra of Λ-tris(ethylenediamine)-rhodium(III) {[Rh(en)3]3+} have been calculated at 16 on-, near-, and off-resonant wavelengths between 290 and 800 nm. The resulting spectra are analyzed in detail with a focus on the observed resonance effects. Because several electronically excited states are involved, the spectra are never monosignate, as is often observed in resonance Raman optical activity spectra. Most normal modes are enhanced through these resonance effects, but in several cases, de-enhancement effects are found. The molecular origins of the Raman optical activity intensity for selected normal modes are established by means of group coupling matrices. In general, this methodology allows one to produce an intuitive explanation for the intensity behavior of a given normal mode. However, due to the complex electronic structure of [Rh(en)3]3+, there are some intriguing resonance effects the origins of which could not be fully clarified in terms of group coupling effects. Therefore, simple and general rules that predict how the intensity of a specific normal mode is affected by resonance effects are difficult to devise.
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Affiliation(s)
- Thomas Weymuth
- Laboratory of Physical Chemistry , ETH Zurich , 8093 Zurich , Switzerland
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15
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Li G, Kessler J, Cheramy J, Wu T, Poopari MR, Bouř P, Xu Y. Transfer and Amplification of Chirality Within the “Ring of Fire” Observed in Resonance Raman Optical Activity Experiments. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201909603] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Guojie Li
- Department of ChemistryUniversity of Alberta Edmonton Alberta T6G 2G2 Canada
| | - Jiří Kessler
- Institute of Organic Chemistry and Biochemistry Flemingovo náměstí 2 16610 Prague Czech Republic
| | - Joseph Cheramy
- Department of ChemistryUniversity of Alberta Edmonton Alberta T6G 2G2 Canada
| | - Tao Wu
- Institute of Organic Chemistry and Biochemistry Flemingovo náměstí 2 16610 Prague Czech Republic
| | | | - Petr Bouř
- Institute of Organic Chemistry and Biochemistry Flemingovo náměstí 2 16610 Prague Czech Republic
| | - Yunjie Xu
- Department of ChemistryUniversity of Alberta Edmonton Alberta T6G 2G2 Canada
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16
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Egidi F, Giovannini T, Del Frate G, Lemler PM, Vaccaro PH, Cappelli C. A combined experimental and theoretical study of optical rotatory dispersion for (R)-glycidyl methyl ether in aqueous solution. Phys Chem Chem Phys 2019; 21:3644-3655. [PMID: 30383044 DOI: 10.1039/c8cp04445g] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
The dispersive optical activity for aqueous solutions of non-rigid (R)-glycidyl methyl ether (R-GME) has been explored synergistically from experimental and theoretical perspectives. Density functional theory analyses performed with the polarizable continuum model for implicit solvation identified nine low-lying stable conformers that are interconverted by rotation about two large-amplitude torsional coordinates. The antagonistic chiroptical signatures predicted for these structural isomers were averaged under a Boltzmann-weighting ansatz to estimate the behavior expected for a thermally equilibrated ensemble. This led to optical rotatory dispersion profiles that reproduced the overall shape of observations but failed to achieve uniform agreement with measured specific-rotation values even when anharmonic vibrational corrections were applied. A mixed QM/FQ paradigm, whereby quantum-mechanical (QM) calculations of optical activity were combined with classical molecular dynamics simulations of explicit solvation that included mutual-polarization effects by means of fluctuating charges (FQ), was enlisted to elucidate the microsolvation environment and gauge its impact upon conformer distributions and response properties. Although quantitative accord with experiments remained elusive, this approach revealed strong variations in the magnitude and sign of rotatory powers for R-GME as the configuration of surrounding water molecules evolved, thereby highlighting the inherently dynamical nature of the solvated chiroptical response, calling into question the validity of "static" descriptions based on the presumption of distinct energy minima, and giving insight into the inherent complexity posed by the modeling of such properties for solvated systems.
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Affiliation(s)
- Franco Egidi
- Scuola Normale Superiore, Piazza dei Cavalieri 7, Pisa, Italy
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17
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Fusè M, Egidi F, Bloino J. Vibrational circular dichroism under the quantum magnifying glass: from the electronic flow to the spectroscopic observable. Phys Chem Chem Phys 2019; 21:4224-4239. [DOI: 10.1039/c8cp06514d] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A chemically intuitive method to analyse and interpret vibrational circular dichroism spectra based on the vibrational transition current density.
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Affiliation(s)
- Marco Fusè
- Scuola Normale Superiore
- Piazza dei Cavalieri 7
- Pisa
- Italy
| | - Franco Egidi
- Scuola Normale Superiore
- Piazza dei Cavalieri 7
- Pisa
- Italy
| | - Julien Bloino
- Scuola Normale Superiore
- Piazza dei Cavalieri 7
- Pisa
- Italy
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18
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Baiardi A, Bloino J, Barone V. Time-Dependent Formulation of Resonance Raman Optical Activity Spectroscopy. J Chem Theory Comput 2018; 14:6370-6390. [PMID: 30281300 DOI: 10.1021/acs.jctc.8b00488] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
In this work, we extend the theoretical framework recently developed for the simulation of resonance Raman (RR) spectra of medium-to-large sized systems to its chiral counterpart, namely, resonance Raman optical activity (RROA). The theory is based on a time-dependent (TD) formulation, with the transition tensors obtained as half-Fourier transforms of the appropriate cross-correlation functions. The implementation has been kept as general as possible, supporting adiabatic and vertical models for the PES representation, both in Cartesian and internal coordinates, with the possible inclusion of Herzberg-Teller (HT) effects. Thanks to the integration of this TD-RROA procedure within a general-purpose quantum-chemistry program, both solvation and leading anharmonicity effects can be included in an effective way. The implementation is validated on one of the smallest chiral molecule (methyloxirane). Practical applications are illustrated with three medium-size organic molecules (naproxen-OCD3, quinidine and 2-Br-hexahelicene), whose simulated spectra are compared to the corresponding experimental data.
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Affiliation(s)
- Alberto Baiardi
- Scuola Normale Superiore , piazza dei Cavalieri 7 , I-56126 Pisa , Italy
| | - Julien Bloino
- Scuola Normale Superiore , piazza dei Cavalieri 7 , I-56126 Pisa , Italy
| | - Vincenzo Barone
- Scuola Normale Superiore , piazza dei Cavalieri 7 , I-56126 Pisa , Italy
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19
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Shen C, Srebro-Hooper M, Weymuth T, Krausbeck F, Navarrete JTL, Ramírez FJ, Nieto-Ortega B, Casado J, Reiher M, Autschbach J, Crassous J. Redox-Active Chiroptical Switching in Mono- and Bis-Iron Ethynylcarbo[6]helicenes Studied by Electronic and Vibrational Circular Dichroism and Resonance Raman Optical Activity. Chemistry 2018; 24:15067-15079. [PMID: 30044521 DOI: 10.1002/chem.201803069] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2018] [Revised: 07/24/2018] [Indexed: 11/10/2022]
Abstract
Introducing one or two alkynyl-iron moieties onto a carbo[6]helicene results in organometallic helicenes (2 a,b) that display strong chiroptical activity combined with efficient redox-triggered switching. The neutral and oxidized forms have been studied in detail by electronic and vibrational circular dichroism, as well as by Raman optical activity (ROA) spectroscopy. The experimental results were analyzed and spectra were assigned with the help of first-principles calculations. In particular, a recently developed method for ROA calculations under resonance conditions has been used to study the intricate resonance effects on the ROA spectrum of mono-iron ethynylhelicene 2 a.
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Affiliation(s)
- Chengshuo Shen
- Institut des Sciences Chimiques de Rennes UMR 6226, CNRS Université de Rennes 1, Campus de Beaulieu, 35042, Rennes Cedex, France
| | - Monika Srebro-Hooper
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387, Krakow, Poland
| | - Thomas Weymuth
- Laboratorium für Physikalische Chemie, ETH Zürich, Vladimir-Prelog-Weg 2, CH-8093, Zürich, Switzerland
| | - Florian Krausbeck
- Laboratorium für Physikalische Chemie, ETH Zürich, Vladimir-Prelog-Weg 2, CH-8093, Zürich, Switzerland
| | - Juan T López Navarrete
- Department of Physical Chemistry, University of Malaga, Campus de Teatinos s/n, Malaga, 29071, Spain
| | - Francisco J Ramírez
- Department of Physical Chemistry, University of Malaga, Campus de Teatinos s/n, Malaga, 29071, Spain
| | - Belén Nieto-Ortega
- Department of Physical Chemistry, University of Malaga, Campus de Teatinos s/n, Malaga, 29071, Spain
| | - Juan Casado
- Department of Physical Chemistry, University of Malaga, Campus de Teatinos s/n, Malaga, 29071, Spain
| | - Markus Reiher
- Laboratorium für Physikalische Chemie, ETH Zürich, Vladimir-Prelog-Weg 2, CH-8093, Zürich, Switzerland
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, NY, 14260, USA
| | - Jeanne Crassous
- Institut des Sciences Chimiques de Rennes UMR 6226, CNRS Université de Rennes 1, Campus de Beaulieu, 35042, Rennes Cedex, France
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20
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Luber S. Localized molecular orbitals for calculation and analysis of vibrational Raman optical activity. Phys Chem Chem Phys 2018; 20:28751-28758. [DOI: 10.1039/c8cp05880f] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
First calculations of vibrational Raman optical activity based on localized molecular orbitals are presented, which pave the way for novel insight into spectroscopic signatures of chiral systems.
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Affiliation(s)
- Sandra Luber
- Department of Chemistry
- University of Zurich
- Zurich
- Switzerland
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21
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Srebro-Hooper M, Autschbach J. Calculating Natural Optical Activity of Molecules from First Principles. Annu Rev Phys Chem 2017; 68:399-420. [DOI: 10.1146/annurev-physchem-052516-044827] [Citation(s) in RCA: 94] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260
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22
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Luber S. Raman Optical Activity Spectra from Density Functional Perturbation Theory and Density-Functional-Theory-Based Molecular Dynamics. J Chem Theory Comput 2017; 13:1254-1262. [DOI: 10.1021/acs.jctc.6b00820] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Sandra Luber
- Department of Chemistry C, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland
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23
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Krausbeck F, Autschbach J, Reiher M. Calculated Resonance Vibrational Raman Optical Activity Spectra of Naproxen and Ibuprofen. J Phys Chem A 2016; 120:9740-9748. [DOI: 10.1021/acs.jpca.6b09975] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Florian Krausbeck
- ETH Zürich, Laboratorium für Physikalische
Chemie, Vladimir-Prelog-Weg
2, CH-8093 Zürich, Switzerland
| | - Jochen Autschbach
- Department
of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260-3000, United States
| | - Markus Reiher
- ETH Zürich, Laboratorium für Physikalische
Chemie, Vladimir-Prelog-Weg
2, CH-8093 Zürich, Switzerland
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