1
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Mang A, Rotthowe N, Beltako K, Linseis M, Pauly F, Winter RF. Single-molecule conductance studies on quasi- and metallaaromatic dibenzoylmethane coordination compounds and their aromatic analogs. NANOSCALE 2023; 15:5305-5316. [PMID: 36811332 DOI: 10.1039/d2nr05670d] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
The ability to predict the conductive behaviour of molecules, connected to macroscopic electrodes, represents a crucial prerequisite for the design of nanoscale electronic devices. In this work, we investigate whether the notion of a negative relation between conductance and aromaticity (the so-called NRCA rule) also pertains to quasi-aromatic and metallaaromatic chelates derived from dibenzoylmethane (DBM) and Lewis acids (LAs) that either do or do not contribute two extra dπ electrons to the central resonance-stabilised β-ketoenolate binding pocket. We therefore synthesised a family of methylthio-functionalised DBM coordination compounds and subjected them, along with their truly aromatic terphenyl and 4,6-diphenylpyrimidine congeners, to scanning tunneling microscope break-junction (STM-BJ) experiments on gold nanoelectrodes. All molecules share the common motif of three π-conjugated, six-membered, planar rings with a meta-configuration at the central ring. According to our results, their molecular conductances fall within a factor of ca. 9 in an ordering aromatic < metallaaromatic < quasi-aromatic. The experimental trends are rationalised by quantum transport calculations based on density functional theory (DFT).
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Affiliation(s)
- André Mang
- Chemistry Department, University of Konstanz, 78457 Konstanz, Germany.
| | - Nils Rotthowe
- Chemistry Department, University of Konstanz, 78457 Konstanz, Germany.
| | - Katawoura Beltako
- Physics Department, University of Lomé, 1515 Lomé, Togo
- Institute of Physics, University of Augsburg, 86159 Augsburg, Germany.
| | - Michael Linseis
- Chemistry Department, University of Konstanz, 78457 Konstanz, Germany.
| | - Fabian Pauly
- Institute of Physics, University of Augsburg, 86159 Augsburg, Germany.
| | - Rainer F Winter
- Chemistry Department, University of Konstanz, 78457 Konstanz, Germany.
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2
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D'Amico F, Musso ME, Berger RJF, Cefarin N, Birarda G, Tondi G, Bertoldo Menezes D, Reyer A, Scarabattoli L, Sepperer T, Schnabel T, Vaccari L. Chemical constitution of polyfurfuryl alcohol investigated by FTIR and Resonant Raman spectroscopy. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 262:120090. [PMID: 34182297 DOI: 10.1016/j.saa.2021.120090] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Revised: 06/15/2021] [Accepted: 06/16/2021] [Indexed: 06/13/2023]
Abstract
The actual chemical structure of polyfurfuryl alcohol (PFA) is still uncertain in spite of several studies on the topic, variations during the polymerization processes being one reason that must be addressed. The use of a limited set of analytical techniques is often insufficient to provide an exhaustive chemical characterization. Moreover, it is still not possible to exactly determine presence and amount of each specific functional group in the polymeric structure. We employed both Fourier Transform Infrared Spectroscopy (FTIR) and Resonant Raman spectroscopy (RR), corroborated by quantum mechanically aided analysis of the experimental spectra, to infer about the chemical structure of two samples of PFAs, synthetized in different ways and appearing macroscopically different, the first one being a liquid and viscous commercial sample, the second one being a self-prepared solid and rigid sample produced following a thermosetting procedure. The vibrational spectroscopic analysis confirms the presence of differences in their chemical structures. The viscous form of PFA is mainly composed by short polymeric chains, and is characterized by the presence of isolated furfuryl alcohol and furfural residues similar to 5-hydroxymethylfurfural; the thermosetted PFA is formed by more cross-linked structures, characterized by several ketones and alkene double bonds, as well as a significant presence of Diels-Alder structures. In summary, the present study evidences how the use of both FTIR and RR spectroscopy, the latter carried out at several laser excitation wavelengths, indicates an accurate way to spectroscopically investigate complex polymers enabling to satisfactorily infer about their peculiar chemical structure.
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Affiliation(s)
- Francesco D'Amico
- Elettra-Sincrotrone Trieste S.C.p.A., Strada Statale 14 - km 163,5 in AREA Science Park, 34149 Basovizza, TS, Italy.
| | - Maurizio E Musso
- University of Salzburg, Department of Chemistry and Physics of Materials, Jakob-Haringer-Strasse 2a, 5020 Salzburg, Austria.
| | - Raphael J F Berger
- University of Salzburg, Department of Chemistry and Physics of Materials, Jakob-Haringer-Strasse 2a, 5020 Salzburg, Austria
| | - Nicola Cefarin
- Elettra-Sincrotrone Trieste S.C.p.A., Strada Statale 14 - km 163,5 in AREA Science Park, 34149 Basovizza, TS, Italy
| | - Giovanni Birarda
- Elettra-Sincrotrone Trieste S.C.p.A., Strada Statale 14 - km 163,5 in AREA Science Park, 34149 Basovizza, TS, Italy
| | - Gianluca Tondi
- Land, Environment, Agriculture and Forestry Department, University of Padua, Viale dell'Università 16, 35020 Legnaro, PD, Italy
| | - Durval Bertoldo Menezes
- Federal Institute of Triângulo Mineiro, Campus Uberlândia, 38.400-970 Uberlandia, Minas Gerais, Brazil
| | - Andreas Reyer
- University of Salzburg, Department of Chemistry and Physics of Materials, Jakob-Haringer-Strasse 2a, 5020 Salzburg, Austria
| | - Letizia Scarabattoli
- University of Salzburg, Department of Chemistry and Physics of Materials, Jakob-Haringer-Strasse 2a, 5020 Salzburg, Austria; Università degli Studi di Perugia, Department of Chemistry, Biology and Biotechnology, Perugia, Italy
| | - Thomas Sepperer
- Salzburg University of Applied Sciences, Forest Products Technology & Timber Construction Department, Marktstrasse 136a, 5431 Kuchl, Austria; Salzburg Center for Smart Materials, Jakob-Haringer-Strasse 2a, 5020 Salzburg, Austria
| | - Thomas Schnabel
- Salzburg University of Applied Sciences, Forest Products Technology & Timber Construction Department, Marktstrasse 136a, 5431 Kuchl, Austria
| | - Lisa Vaccari
- Elettra-Sincrotrone Trieste S.C.p.A., Strada Statale 14 - km 163,5 in AREA Science Park, 34149 Basovizza, TS, Italy
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3
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Lin CY, Boxer SG. Unusual Spectroscopic and Electric Field Sensitivity of Chromophores with Short Hydrogen Bonds: GFP and PYP as Model Systems. J Phys Chem B 2020; 124:9513-9525. [DOI: 10.1021/acs.jpcb.0c07730] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Chi-Yun Lin
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Steven G. Boxer
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
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4
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List NH, Dempwolff AL, Dreuw A, Norman P, Martínez TJ. Probing competing relaxation pathways in malonaldehyde with transient X-ray absorption spectroscopy. Chem Sci 2020; 11:4180-4193. [PMID: 34122881 PMCID: PMC8152795 DOI: 10.1039/d0sc00840k] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Excited-state intramolecular hydrogen transfer (ESIHT) is a fundamental reaction relevant to chemistry and biology. Malonaldehyde is the simplest example of ESIHT, yet only little is known experimentally about its excited-state dynamics. Several competing relaxation pathways have been proposed, including internal conversion mediated by ESIHT and C[double bond, length as m-dash]C torsional motion as well as intersystem crossing. We perform an in silico transient X-ray absorption spectroscopy (TRXAS) experiment at the oxygen K-edge to investigate its potential to monitor the proposed ultrafast decay pathways in malonaldehyde upon photoexcitation to its bright S2(ππ*) state. We employ both restricted active space perturbation theory and algebraic-diagrammatic construction for the polarization propagator along interpolated reaction coordinates as well as representative trajectories from ab initio multiple spawning simulations to compute the TRXAS signals from the lowest valence states. Our study suggests that oxygen K-edge TRXAS can distinctly fingerprint the passage through the H-transfer intersection and the concomitant population transfer to the S1(nπ*) state. Potential intersystem crossing to T1(ππ*) is detectable from reappearance of the double pre-edge signature and reversed intensities. Moreover, the torsional deactivation pathway induces transient charge redistribution from the enol side towards the central C-atom and manifests itself as substantial shifts of the pre-edge features. Given the continuous advances in X-ray light sources, our study proposes an experimental route to disentangle ultrafast excited-state decay channels in this prototypical ESIHT system and provides a pathway-specific mapping of the TRXAS signal to facilitate the interpretation of future experiments.
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Affiliation(s)
- Nanna H List
- Department of Chemistry, The PULSE Institute, Stanford University Stanford CA 94305 USA .,SLAC National Accelerator Laboratory 2575 Sand Hill Road Menlo Park CA 94025 USA
| | - Adrian L Dempwolff
- Interdisciplinary Center for Scientific Computing, Heidelberg University Im Neuenheimer Feld 205 D-69120 Heidelberg Germany
| | - Andreas Dreuw
- Interdisciplinary Center for Scientific Computing, Heidelberg University Im Neuenheimer Feld 205 D-69120 Heidelberg Germany
| | - Patrick Norman
- School of Engineering Sciences in Chemistry, Biotechnology and Health (CBH), Department of Theoretical Chemistry and Biology, KTH Royal Institute of Technology Sweden
| | - Todd J Martínez
- Department of Chemistry, The PULSE Institute, Stanford University Stanford CA 94305 USA .,SLAC National Accelerator Laboratory 2575 Sand Hill Road Menlo Park CA 94025 USA
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5
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Yang G, Jin X, Chen K, Yang D. Hydrogen bonding interactions induced excited state proton transfer and fluoride anion sensing mechanism for 2‐(3,5‐dichloro‐2,6‐dihydroxy‐phenyl)‐benzoxazole‐5‐carboxylicacid. J PHYS ORG CHEM 2020. [DOI: 10.1002/poc.4054] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Guang Yang
- Basic Teaching DepartmentJiaozuo University Jiaozuo China
| | - Xiaofeng Jin
- Basic Teaching DepartmentJiaozuo University Jiaozuo China
| | - Kaifeng Chen
- Basic Teaching DepartmentJiaozuo University Jiaozuo China
| | - Dapeng Yang
- College of Physics and ElectronicsNorth China University of Water Resources and Electric Power Zhengzhou China
- State Key Laboratory of Molecular Reaction DynamicsDalian Institute of Chemical Physics, Chinese Academy of Sciences Dalian China
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Milovanović B, Stanković IM, Petković M, Etinski M. Elucidating Solvent Effects on Strong Intramolecular Hydrogen Bond: DFT-MD Study of Dibenzoylmethane in Methanol Solution. Chemphyschem 2019; 20:2852-2859. [PMID: 31544323 DOI: 10.1002/cphc.201900704] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2019] [Revised: 08/31/2019] [Indexed: 11/10/2022]
Abstract
The dynamic aspect of solvation plays a crucial role in determining properties of strong intramolecular hydrogen bonds since solvent fluctuations modify instantaneous hydrogen-bonded proton transfer barriers. Previous studies pointed out that solvent-solute interactions in the first solvation shell govern the position of the proton but the ability of the electric field due to other solvent molecules to localize the proton remains an important issue. In this work, we examine the structure of the O-H⋅⋅⋅O intramolecular hydrogen bond of dibenzoylmethane in methanol solution by employing density functional theory-based molecular dynamics and quantum chemical calculations. Our computations showed that homogeneous electric fields with intensities corresponding to those found in polar solvents are able to considerably alter the proton transfer barrier height in the gas phase. In methanol solution, the proton position is correlated with the difference in electrostatic potentials on the oxygen atoms of dibenzoylmethane even when dibenzoylmethane-methanol hydrogen bonding is lacking. On a timescale of our simulation, the hydrogen bonding and solvent electrostatics tend to localize the proton on different oxygen atoms. These findings provide an insight into the importance of the solvent electric field on the structure of a strong intramolecular hydrogen bond.
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Affiliation(s)
- Branislav Milovanović
- Faculty of Physical Chemistry, University of Belgrade, Studentski trg 12-16, 11000, Belgrade, Serbia
| | | | - Milena Petković
- Faculty of Physical Chemistry, University of Belgrade, Studentski trg 12-16, 11000, Belgrade, Serbia
| | - Mihajlo Etinski
- Faculty of Physical Chemistry, University of Belgrade, Studentski trg 12-16, 11000, Belgrade, Serbia
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7
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Fu W, Wang Y, Hu S, Zhou X, Long X. Hydrogen Isotope Separation via Ion Penetration through Group-IV Monolayer Materials in Electrochemical Environment. J Phys Chem Lett 2019; 10:4618-4624. [PMID: 31241949 DOI: 10.1021/acs.jpclett.9b01354] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Based on density functional theory calculations, the chemical penetration behaviors and separation properties of hydrogen isotope ions through pristine and fully hydrogenated group-IV monolayer materials are investigated. Both the penetration energy profiles and kinetic isotope effects are studied to evaluate the performance of four group-IV (C, Si, Ge, and Sn) monolayer materials for hydrogen isotope separation. To examine the thermodynamically stable morphologies of these monolayer materials in electrochemical aqueous environment, the Pourbaix diagrams varying with pH and external bias are constructed. The fully hydrogenated monolayer materials are found to be thermodynamically favorable in some conditions, and the proton penetration and hydrogen isotope separation behaviors are different from their pristine counterparts. The silicene is found to be a suitable candidate material for hydrogen isotope separation in an electrochemical environment.
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Affiliation(s)
- Wenbo Fu
- Institute of Nuclear Physics and Chemistry , China Academy of Engineering Physics , No. 64 Mianshan Road , Mianyang 621900 , China
| | - Yinglou Wang
- Institute of Nuclear Physics and Chemistry , China Academy of Engineering Physics , No. 64 Mianshan Road , Mianyang 621900 , China
| | - Shuanglin Hu
- Institute of Nuclear Physics and Chemistry , China Academy of Engineering Physics , No. 64 Mianshan Road , Mianyang 621900 , China
| | - Xiaosong Zhou
- Institute of Nuclear Physics and Chemistry , China Academy of Engineering Physics , No. 64 Mianshan Road , Mianyang 621900 , China
| | - Xinggui Long
- Institute of Nuclear Physics and Chemistry , China Academy of Engineering Physics , No. 64 Mianshan Road , Mianyang 621900 , China
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8
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Vealey ZN, Foguel L, Vaccaro PH. Hydrogen-Bonding Motifs and Proton-Transfer Dynamics in Electronically Excited 6-Hydroxy-2-formylfulvene. J Phys Chem A 2019; 123:6506-6526. [DOI: 10.1021/acs.jpca.9b05025] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Zachary N. Vealey
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, Connecticut 06520-8107, United States
| | - Lidor Foguel
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, Connecticut 06520-8107, United States
| | - Patrick H. Vaccaro
- Department of Chemistry, Yale University, P.O. Box 208107, New Haven, Connecticut 06520-8107, United States
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9
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Ligiéro CBP, Oliveira TV, Fontes CCF, Barragan JTC, So FWY, Kubota LT, Nome RA, Miranda PCML. TIMPZ: An Exquisite Building Block for Metal/Hydrogen Coordination Polymers. Eur J Inorg Chem 2019. [DOI: 10.1002/ejic.201900229] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Carolina B. P. Ligiéro
- Institute of Chemistry University of Campinas Josué de Castro 10384‐612 Sao Paulo Brazil
| | - Thiago V. Oliveira
- Institute of Chemistry University of Campinas Josué de Castro 10384‐612 Sao Paulo Brazil
| | - Chárbel C. F. Fontes
- Institute of Chemistry University of Campinas Josué de Castro 10384‐612 Sao Paulo Brazil
| | - José T. C. Barragan
- Institute of Chemistry University of Campinas Josué de Castro 10384‐612 Sao Paulo Brazil
| | - Fernanda W. Y. So
- Institute of Chemistry University of Campinas Josué de Castro 10384‐612 Sao Paulo Brazil
| | - Lauro T. Kubota
- Institute of Chemistry University of Campinas Josué de Castro 10384‐612 Sao Paulo Brazil
| | - René A. Nome
- Institute of Chemistry University of Campinas Josué de Castro 10384‐612 Sao Paulo Brazil
| | - Paulo C. M. L. Miranda
- Institute of Chemistry University of Campinas Josué de Castro 10384‐612 Sao Paulo Brazil
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10
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Kojić M, Lyskov I, Milovanović B, Marian CM, Etinski M. The UVA response of enolic dibenzoylmethane: beyond the static approach. Photochem Photobiol Sci 2019; 18:1324-1332. [DOI: 10.1039/c9pp00005d] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The nπ* and ππ* states of dibenzoylmethane are vibronically coupled and their crossing occurs during the excited-state intramolecular proton transfer.
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Affiliation(s)
- Marko Kojić
- Faculty of Physical Chemistry
- University of Belgrade
- 11000 Belgrade
- Serbia
| | - Igor Lyskov
- Chemical and Quantum Physics Group
- ARC Centre of Excellence in Exciton Science
- School of Science
- RMIT University
- Melbourne
| | | | - Christel M. Marian
- Institute of Theoretical and Computational Chemistry
- Heinrich Heine University Düsseldorf
- D-40225 Düsseldorf
- Germany
| | - Mihajlo Etinski
- Faculty of Physical Chemistry
- University of Belgrade
- 11000 Belgrade
- Serbia
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11
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Vealey ZN, Foguel L, Vaccaro PH. Spectral Signatures of Proton-Transfer Dynamics at the Cusp of Low-Barrier Hydrogen Bonding. J Phys Chem Lett 2018; 9:4949-4954. [PMID: 30101590 DOI: 10.1021/acs.jpclett.8b02199] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Despite their importance in diverse chemical and biochemical processes, low-barrier hydrogen bonds remain elusive targets to classify and interpret spectroscopically. Here the correlated nature of hydrogen bonding and proton transfer in the low-barrier regime has been probed for the ground and excited electronic states of 6-hydroxy-2-formylfulvene by acquiring jet-cooled fluorescence spectra of the parent and monodeuterated isotopologs. While excited-state profiles reveal regular vibronic patterns devoid of obvious dynamical signatures, their ground-state counterparts display a radically altered energy landscape characterized by spectral bifurcations comparable in magnitude to typical vibrational spacings (>100 cm-1). Quantitative analyses yield unusual deuterium kinetic isotope effects that straddle limiting values attributed to above-barrier vibration and below-barrier tunneling of the proton adjoining donor/acceptor sites. Our findings provide compelling experimental evidence for ultrafast hydron-migration events commensurate with the onset of low-barrier hydrogen bonding and afford a trenchant glimpse of molecular phenomena taking place at the "tipping point" between disparate dynamical regimes.
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Affiliation(s)
- Zachary N Vealey
- Department of Chemistry , Yale University , New Haven , Connecticut 06520-8107 United States
| | - Lidor Foguel
- Department of Chemistry , Yale University , New Haven , Connecticut 06520-8107 United States
| | - Patrick H Vaccaro
- Department of Chemistry , Yale University , New Haven , Connecticut 06520-8107 United States
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12
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Etinski M, Ensing B. Puzzle of the Intramolecular Hydrogen Bond of Dibenzoylmethane Resolved by Molecular Dynamics Simulations. J Phys Chem A 2018; 122:5945-5954. [DOI: 10.1021/acs.jpca.8b01930] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Mihajlo Etinski
- Faculty of Physical Chemistry, University of Belgrade Studentski trg 12-16 11000 Belgrade, Serbia
| | - Bernd Ensing
- Van ’t Hoff Institute for Molecular Sciences (HIMS), University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
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