Single Molecule Study on Polymer-Nanoparticle Interactions: The Particle Shape Matters

Environment-dependent single-chain mechanics of synthetic polymers and biomacromolecules by atomic force microscopy-based single-molecule force spectroscopy and the implications for advanced polymer materials

"The Tao begets the One. One begets all things of the world." This quote from Tao Te Ching is still inspiring for scientists in chemistry and materials science: The "One" can refer to a single molecule. A macroscopic material is composed of numerous molecules. Although the relationship between the properties of the single molecule and macroscopic material is not well understood yet, it is expected that a deeper understanding of the single-chain mechanics of macromolecules will certainly facilitate the development of materials science. Atomic force microscopy-based single-molecule force spectroscopy (AFM-SMFS) has been exploited extensively as a powerful tool to study the single-chain behaviors of macromolecules. In this review, we summarize the recent advances in the emerging field of environment-dependent single-chain mechanics of synthetic polymers and biomacromolecules by means of AFM-SMFS. First, the single-chain inherent elasticities of several typical linear macromolecules are introduced, which are also confirmed by one of three polymer models with theoretical elasticities of the corresponding macromolecules obtained from quantum mechanical (QM) calculations. Then, the effects of the external environments on the single-chain mechanics of synthetic polymers and biomacromolecules are reviewed. Finally, the impacts of single-chain mechanics of macromolecules on the development of polymer science especially polymer materials are illustrated.

A single-molecule atomic force microscopy study reveals the antiviral mechanism of tannin and its derivatives

Antiviral agents work by stopping or intervening the virus replication. Virus replication is a fast and multi-step process while effective antiviral intervention requires agents to interact with the protein coat, genetic RNA/DNA or both during virus replication. Thus, quantifying these interactions at the molecular level, although it is quite challenging, is very important for an understanding of the underlying molecular mechanism of antiviral intervention. Here, at the single molecule level, we employ single molecule force spectroscopy (SMFS) in combination with AFM imaging and choose tobacco mosaic virus (TMV)/tannin as a model system of tubular virus to directly study how the inhibitor influences the interactions of RNA and coat protein. We illustrated the antiviral mechanism of tannin during the three main stages of TMV infection, i.e., before the entry of cells, the disassembly of genetic RNA and reassembly of genetic RNA, respectively. Our SMFS results show that tannin and its derivatives can stabilize the TMV complex by enhancing the interactions between RNA and coat protein via weak interactions, such as hydrogen bonding and hydrophobic interactions. In addition, the stabilization effect showed molecular weight dependence, i.e., for higher molecular weight tannin the stabilization occurs after genetic RNA gets partially disassembled from the protein coat, while the lower molecular weight tannin hydrolyte starts experiencing the stabilization effect before the RNA disassembly. Furthermore, the cycling stretching-relaxation experiments in the presence/absence of tannin proved that tannin can prevent the assembling of RNA and coat protein. In addition, the AFM imaging results demonstrate that tannin can cause the aggregation of TMV particles in a concentration-dependent manner; a higher concentration of tannin will cause more severe aggregations. These results deepen our understanding of the antiviral mechanism of tannin and its derivatives, which facilitate the rational design of efficient agents for antiviral therapy.

Direct observation of the wrapping/unwrapping of ssDNA around/from a SWCNT at the single-molecule level: towards tuning the binding mode and strength

Complexation of single-stranded DNA (ssDNA) with a chiral single-walled carbon nanotube (SWCNT) exhibits surprising efficacy in CNT dispersion and sorting, optical sensing, and nanoelectronic device design. Studying the wrapping/unwrapping mechanism is challenging because an in situ method at the single-molecule level is required. Here, we developed a method based on single-molecule force spectroscopy to monitor the unwrapping/wrapping of ssDNA from/around a SWCNT. Our results reveal that the wrapping/unwrapping processes are reversible in water, and these processes occur in an equilibrium manner driven mainly by π-π interactions between DNA bases and CNTs. In phosphate buffered saline, the unwrapping process is loading rate-dependent, and ssDNA wrapping around a CNT undergoes two distinct stages dominated by both π-π interactions and hydrogen bonding. In addition, our results show that salts could further stabilize ssDNA/CNT complexes by blocking the electrostatic interactions between adjacent DNA segments and by catalyzing the formation of hydrogen bonds between DNA bases. The stability of ssDNA/CNT is dependent on the DNA sequence and CNT chirality. These results deepen our understanding of ssDNA-CNT interactions and provide effective means to tune the binding mode and strength.